N. G. Cullen

Fatty acid synthase effects on bovine adipose fat and milk fat.

A quantitative trait locus (QTL) was identified by linkage analysis on bovine Chromosome 19 that affects the fatty acid, myristic acid (C14:0), in subcutaneous adipose tissue of pasture-fed beef cattle (99% level: experiment-wise significance). The QTL was also shown to have significant effects on ten fatty acids in the milk fat of pasture-fed dairy cattle. A positional candidate gene for this QTL was identified as fatty acid synthase (FASN), which is a multifunctional enzyme with a central role in the metabolism of lipids. Five single nucleotide polymorphisms (SNPs) were identified in the bovine FASN gene, and animals were genotyped for FASN SNPs in three different cattle resource populations. Linkage and association mapping results using these SNPs were consistent with FASN being the gene underlying the QTL. SNP substitution effects for C14:0 percentage were found to have an effect in the opposite direction in adipose fat to that in milk fat. It is concluded that SNPs in the bovine FASN gene are associated with variation in the fatty acid composition of adipose fat and milk fat.

Some genetic factors affecting temperament in Bos taurus cattle

Abstract Temperament scores were recorded by two operators on a herd of Bos taurus beef cattle, including Angus and Hereford controls and various crossbred groups. The herd consisted of 765 cows, 653 calves at foot (average age 2 months), and 250 yearling heifers. Recording of temperament in the yards was carried out at weighing time in November 1982 using a 1–8 scale, and immediately afterwards when the herd was drafted for natural mating using a 1–6 scale, with higher scores indicating more difficulty experienced by stockmen in carrying out the routine weighing and drafting operations. In addition, a calving temperament score was recorded on 2121 cows calving in 1981–90 using a 0–5 scale. Both scores in the yards differed significantly among cow breed groups (P < 0.001). The range of means was 1.73 units (1.86 phenotypic standard deviations: σ) for the weighing score (Score 1) and 1.57 units (1.29σ) for the drafting score (Score 2). Corresponding data for yearling breed groups were 1.11σ for Score 1 (P ...

Genetic parameters for growth, puberty, and beef cow reproductive traits in a puberty selection experiment

Abstract A selection experiment to change reproductive traits in Angus cattle has been maintained for 14 years, with first calvings in 1985. Alongside an unselected control line, three lines were established, selected for increased age at puberty in heifers (AGE+ line), reduced age at puberty in heifers (AGE‐ line), or increased scrotal circumference (SC line). The last two lines were merged at the 1992 matings, with the revised objective of applying further selection in both sexes to reduce age at puberty in heifers. Dates at puberty in heifers from an average of 8 to 16 months of age and SC in bulls were recorded in all lines, along with the pregnancy rates (PR) and subsequent calving dates (CD) in heifers and all cow‐age groups. Heritabilities of single‐record SC, standardised age at first behavioural oestrus (SFO), and single‐record CD were 0.41 ± 0.04 (repeatability 0.70 ± 0.01), 0.27 ± 0.04, and 0.09 ± 0.04 (repeatability 0.19 ±0.03), respectively. Genetic correlations of SC with SFO and CD were ‐0.25 ± 0.09 and ‐0.23 ± 0.15, respectively; SFO with CD 0.57 ± 0.17; and PR with SFO and SC‐0.36 ±0.13 and 0.12 ± 0.11, respectively. The selection‐line difference in PR over seven years (AGE‐ mean minus AGE+ mean), excluding yearling heifer matings, was 4.7 ± 2.1% (P < 0.05). Mean CD in the AGE‐ line was 3 days earlier than in the AGE+ line (P < 0.09). These correlation and selection‐line results suggest that selecting for higher SC and earlier heifer puberty leads to earlier CD and higher PR.

Effects of the myostatin F94L substitution on beef traits

This study investigated the effects of a SNP in the myostatin gene (MSTN or growth differentiation factor 8, GDF8) on birth, growth, carcass, and beef quality traits in Australia (Aust.) and New Zealand (NZ). The SNP is a cytosine to adenine transversion in exon 1, causing an amino acid substitution of leucine for phenylalanine(94) (F94L). The experiment used crosses between the Jersey and Limousin breeds, with the design being a backcross using first-cross bulls of Jersey x Limousin or Limousin x Jersey breeding, mated to Jersey and Limousin cows. Progeny were genotyped for the myostatin SNP and phenotyped in Aust., with finishing on feedlot (366 calves, over 3 birth years) and in NZ with finishing on pasture (416 calves, over 2 birth years). The effect of the F94L allele (A allele) on birth and growth traits was not significant. The F94L allele in Limousin backcross calves was associated with an increase in meat weight (7.3 and 5.9% of the trait mean in Aust. and NZ, respectively, P < 0.001), and a reduction in fat depth (-13.9 and -18.7% of the trait means on live calves (600 d) and carcasses, respectively, Aust. only, P < 0.001), intramuscular fat content (-8.2% of the trait mean in Aust., P < 0.05; -7.1% in NZ, not significant), total carcass fat weight (-16.5 and -8.1% of the trait mean, Aust. and NZ; P < 0.001 and P < 0.05, respectively). Meat tenderness, pH, and cooking loss of the M. longissimus dorsi were not affected by the F94L variant. In the Jersey backcross calves, additive and dominance effects were confounded because the F94L allele was not segregating in the Jersey dams. The combined effects, however, were significant on LM area (4.4% in both Aust., P < 0.05, and NZ, P < 0.01), channel fat (-11.7%, NZ only, P < 0.01), rib fat depth (-11.2%, NZ only, P < 0.05), and carcass fat weight (-7.1%, NZ only, P < 0.05). The results provide strong evidence that this myostatin F94L variant provides an intermediate and more useful phenotype than the more severe double-muscling phenotype caused by knockout mutations in the myostatin gene.

Quantitative trait loci for organ weights and adipose fat composition in Jersey and Limousin back-cross cattle finished on pasture or feedlot

A QTL study of live animal and carcass traits in beef cattle was carried out in New Zealand and Australia. Back-cross calves (385 heifers and 398 steers) were generated, with Jersey and Limousin backgrounds. This paper reports on weights of eight organs (heart, liver, lungs, kidneys, spleen, gastro-intestinal tract, fat, and rumen contents) and 12 fat composition traits (fatty acid (FA) percentages, saturated and monounsaturated FA subtotals, and fat melting point). The New Zealand cattle were reared and finished on pasture, whilst Australian cattle were reared on grass and finished on grain for at least 180 days. For organ weights and fat composition traits, 10 and 12 significant QTL locations (P<0.05), respectively, were detected on a genome-wide basis, in combined-sire or within-sire analyses. Seven QTL significant for organ weights were found at the proximal end of chromosome 2. This chromosome carries a variant myostatin allele (F94L), segregating from the Limousin ancestry, and this is a positional candidate for the QTL. Ten significant QTL for fat composition were found on chromosomes 19 and 26. Fatty acid synthase and stearoyl-CoA desaturase (SCD1), respectively, are positional candidate genes for these QTL. Two FA QTL found to be common to sire groups in both populations were for percentages of C14:0 and C14:1 (relative to all FAs) on chromosome 26, near the SCD1 candidate gene.

Effect of age, weight, and sire on embryo and fetal survival in sheep.

The goal was to estimate the heritabilities and genetic variances for embryo and fetal survival (ES) in sheep along with the effect of premating ewe weight, age, and bilateral or unilateral ovulation on ES. The data consisted of 11,369 records on ovulation rate and litter size. Statistical models for ES included year and ovulation rate as fixed effects, premating ewe weight, and age as covariates, and sire of embryo, maternal grandsire (MGS), and permanent maternal environmental effects of the ewe as random effects. The variance components were estimated using REML. In ewes that survived to yr 6, the mean litter size was 1.87, 2.05, 2.01, 2.07, and 1.91 ± 0.04 in ewes of age 2, 3, 4, 5, and 6 yr, respectively. Litter size was less in ewes of age 2 and 6 yr compared to ewes of age 3, 4, and 5 yr (P < 0.01). Ovulation rate was lower at age 2 yr and increased from age 2 to 6 yr (P < 0.05). Two-year-old ewes had lower ES than 3-yr-old ewes (P < 0.01) and the probability of ES decreased after age 3 yr (P < 0.01). Thus, ES contributes significantly to lower fertility in 2-yr-old ewes. In ewes with high ovulation rates (i.e., 5 corpora lutea, CL), more balanced ovulations (i.e., 2 or 3 CL on each ovary) tended (P = 0.06) to be associated with increased ES. A quadratic relationship was observed between ewe weight and litter size (P < 0.01) and a positive linear relationship between premating ewe weight and ovulation rate (P < 0.01). A quadratic effect of ewe weight on ES was observed, with decreased ES for low and high ewe weights (P < 0.01). The optimal ewe weight for ES increased with ovulation rate, which is consistent with the requirement of greater body reserves for maintaining a larger number of fetuses during gestation. A quadratic relationship between ewe weight and the probability that a ewe is able to maintain a pregnancy was also observed (P < 0.05). Pregnancy loss is due to failure of the embryo or fetus or failure of the dam to maintain the pregnancy. The sire of the embryo only influences the embryo, whereas the MGS influences both the ewe and the embryo. The heritability for the direct additive effect on ES in ewes that lambed was 0.0081 ± 0.0139, and the heritability for the maternal additive effect was 0.0447 ± 0.0242. The permanent maternal environmental variance component was significant and explained 8.5% of the phenotypic variance. Thus, genetically, the dams ability to maintain a pregnancy has 5.5 times the effect on pregnancy loss than the embryos ability to survive, and this, in turn, was only half the size of the permanent environmental effect. Therefore, selection among dams based on the mean embryonic survival of their embryos will provide an effective way to improve embryonic survival.

Quantitative trait loci for live animal and carcass composition traits in Jersey and Limousin back-cross cattle finished on pasture or feedlot

A quantitative trait locus (QTL) study was carried out in two countries, recording live animal and carcass composition traits. Back-cross calves (385 heifers and 398 steers) were generated, with Jersey and Limousin breed backgrounds. The New Zealand cattle were reared on pasture to carcass weights averaging 229 kg, whilst the Australian cattle were reared on grass and finished on grain (for at least 180 days) to carcass weights averaging 335 kg. From 11 live animal traits and 31 carcass composition traits respectively, 5 and 22 QTL were detected in combined-sire analyses, which were significant (P < 0.05) on a genome-wise basis. Fourteen significant traits for carcass composition QTL were on chromosome 2 and these were traits associated with muscling and fatness. This chromosome carried a variant myostatin allele (F94L), segregating from the Limousin ancestry. Despite very different cattle management systems between the two countries, the two populations had a large number of QTL in common. Of the 18 traits which were common to both countries, and which had significant QTL at the genome-wise level, eight were significant in both countries.

Establishment of a pipeline to analyse non-synonymous SNPs in Bos taurus.

BackgroundSingle nucleotide polymorphisms (SNPs) are an abundant form of genetic variation in the genome of every species and are useful for gene mapping and association studies. Of particular interest are non-synonymous SNPs, which may alter protein function and phenotype. We therefore examined bovine expressed sequences for non-synonymous SNPs and validated and tested selected SNPs for their association with measured traits.ResultsOver 500,000 public bovine expressed sequence tagged (EST) sequences were used to search for coding SNPs (cSNPs). A total of 15,353 SNPs were detected in the transcribed sequences studied, of which 6,325 were predicted to be coding SNPs with the remaining 9,028 SNPs presumed to be in untranslated regions. Of the cSNPs detected, 2,868 were predicted to result in a change in the amino acid encoded. In order to determine the actual number of non-synonymous polymorphic SNPs we designed assays for 920 of the putative SNPs. These SNPs were then genotyped through a panel of cattle DNA pools using chip-based MALDI-TOF mass spectrometry. Of the SNPs tested, 29% were found to be polymorphic with a minor allele frequency >10%. A subset of the SNPs was genotyped through animal resources in order to look for association with age of puberty, facial eczema resistance or meat yield. Three SNPs were nominally associated with resistance to the disease facial eczema (P < 0.01).ConclusionWe have identified 15,353 putative SNPs in or close to bovine genes and 2,868 of these SNPs were predicted to be non-synonymous. Approximately 29% of the non-synonymous SNPs were polymorphic and common with a minor allele frequency >10%. Of the SNPs detected in this study, 99% have not been previously reported. These novel SNPs will be useful for association studies or gene mapping.

Genetic and phenotypic relationships among carcass measurements in beef cattle

Abstract Carcass data from three large beef‐cattle breeding experiments in New Zealand were analysed. Regressions of saleable meat weight on carcass and liveweights were estimated as parameters for a modelling exercise where pasture was converted to carcass and liveweight, finishing cattle at different end points. The data were also used in order to estimate heritabilities for nine carcass traits and the relationships among them. Slaughter data were from 1962 cattle, sired by 199 different bulls from 13 sire breeds. Relationships were first estimated between hot carcass weight and either carcass components or pre‐slaughter weight, and then an “animal” model was used to estimate genetic parameters. On a log‐log basis, the overall regression of carcass weight on pre‐slaughter weight was 1.089±0.008. The corresponding log‐log regression of saleable meat weight on carcass weight was 1.002 ± 0.007, bone weight on carcass weight 0.779 ± 0.015, and trimmed fat weight on carcass weight 1.265 ± 0.041. The regressi...

Response to divergent selection for bloat susceptibility in dairy cows

Abstract An experiment was established with Friesian, Jersey, and Friesian × Jersey cross dairy cattle at Ruakura Agricultural Centre, Hamilton, New Zealand to select for high (HS) or low susceptibility (LS) to pasture bloat. Foundation cows were graded for bloat, assigned to herd according to grade, and mated to selected outside bulls to generate calves in 1973–76. Thereafter the herds were closed to the introduction of outside genes. This paper reports on genetic parameters and provides an update to the first nine calf crops previously summarised. From the 16 calf crops born in 1973–88, 718 animals were graded on a 0–4 scale when challenged with bloat. The paternal half-sib heritability of individual bloat grades at 6 months of age and the repeatability of grades between 6 and 24 months of age were obtained by restricted maximum likelihood techniques. The estimates were 0.12 N 0.06 and 0.13 N 0.02, respectively. A mean 6-month grade from an average of 4.7 records per animal had a heritability of 0.52 N ...