N. Li

Expression analysis of global gene response to chronic heat exposure in broiler chickens (Gallus gallus) reveals new reactive genes

The process of heat regulation is complex and the exact molecular mechanism is not fully understood. To investigate the global gene response to chronic heat exposure, a breast muscle cDNA library and a liver tissue cDNA library from Silkie fowl were constructed and analyzed in bioinformatics. A total of 8,935 nonredundant EST were identified from and used for gene expression analysis. Microarray assay revealed that in breast muscle of broiler chickens (Gallus gallus), 110 genes changed expression levels after 3 wk of cycling heat stress. Ubiquitin B (UBB); ubiquitin C (UBC); tumor necrosis factor receptor-associated factor 3-interacting Jun amino-terminal kinase activating modulator (TRAF3IP3); eukaryotic translation initiation factor 3, subunit 6 (EIF3S6); poly(A) binding protein, cytoplasmic 1 (PABPC1); and F-box only protein 11 (FBXO11) were the only genes that have been reported to be involved in heat regulation; the majority of the other genes were shown to be related for the first time. The finding of new heat-reactive genes [mitogen-activated protein kinase activating protein PM20/PM21; suppressors of cytokine signaling (SOCS) box-containing protein 2 (ASB2); ubiquitin-specific proteinase 45 (USP45); and TRK-fused gene (TFG)] suggests that the mitogen-activated protein kinase pathways as well as the ubiquitin-proteasome pathways and the nuclear factor κB pathways play important roles in heat regulation. This study provides new information on the regulation of heat stress, though the mechanism is far from being understood. Further in-depth research on the newly discovered heat-reactive genes is required to fully understand their molecular functions in thermoregulation.

Fine-Mapping Quantitative Trait Loci for Body Weight and Abdominal Fat Traits: Effects of Marker Density and Sample Size

Highly significant QTL for BW and abdominal fat traits on chicken chromosome 1 were reported previously in a unique F2 population. The objective of this study was to confirm and refine the QTL locations. Compared with the previous experiment, this study added 8 new families, including all the animals in the pedigree, and genotyped 9 more microsatellite markers, including 6 novel ones. Linkage analyses were performed. The results of the linkage analyses showed that the confidence intervals for BW and abdominal fat percentage were narrowed sharply to a small interval spanning 5.5 and 3.7 Mb, respectively. The results of the present study showed that using more markers and individuals could decrease the confidence interval of QTL effectively. In the current QTL region, by combining the biological knowledge of genes and the results of a microarray analysis that was performed in divergently selected lean and fat lines, several genes stood out as potential candidate genes.

Identification of differentially expressed proteins in adipose tissue of divergently selected broilers

Reducing fat has been a major goal for the broiler industry. To gain insight into the molecular mechanisms underlying the regulation of fat deposition in chickens, a 2-dimensional electrophoresis-based proteomic approach was used to analyze the differentially expressed proteins in abdominal adipose tissues of Northeast Agricultural University broiler lines divergently selected for abdominal fat content (NEAUHLF). A total of 20 differentially expressed protein spots were found in abdominal adipose tissue between fat and lean broilers at 7 wk of age. Among them, 12 protein spots were upregulated and 8 protein spots were downregulated in fat birds compared with those in lean birds. These 20 protein spots were then identified by matrix-assisted laser desorption-ionization time-of-flight mass spectrometry and matched to 15 proteins by searching against the NCBInr and SWISS-PROT databases, including adipocyte fatty acid-binding protein, apolipoprotein A-I, long-chain acyl-coenzyme A dehydrogenase, heat shock protein beta 1, glutathione S-transferase theta 1, glutathione S-transferase class alpha, guanine nucleotide-binding protein beta polypeptide 1, syntaxin 2, vimentin, cofilin 2, otokeratin, telomerase catalytic subunit, and 3 hypothetical proteins. These proteins are mainly related to lipid metabolism, chaperone, redox, signal transduction, transport, and cytoskeleton. The results, from the point of view of protein expression, establish the groundwork for further studies of the basic genetic control of growth and development of broiler adipose tissue.

Highly efficient dissociation of oxygen from hemoglobin in Tibetan chicken embryos compared with lowland chicken embryos incubated in hypoxia

Oxygen is one of the critical determinants for normal embryonic and fetal development. In avian embryos, lack of oxygen will lead to high fetal mortality, heteroplasia, and cardiovascular dysfunction. Tibetan chicken is a breed native to Tibet that could survive and keep higher hatchability regardless of negative effects of hypoxia. Generally, adaptive animals in high altitudes are characterized by higher hemoglobin concentrations and oxygen affinity. In the present study, the capacity of oxygen supply in late chick embryo (including d 17, 19, and 21) was compared between Tibetan chicken and a lowland breed, Dwarf White chicken, by determining the hemoglobin concentrations and oxygen equilibrium curves in both hypoxic (13% O(2)) and normoxic (21% O(2)) conditions. The results showed that a higher level of hemoglobin concentration was induced by hypoxia in Tibetan chicken embryos, and the hemoglobin could perform with better cooperativity and deliver oxygen to tissues more easily. Further investigation revealed that the carbonic anhydrase II mRNA in red blood cells of Tibetan chicken was increasingly induced to a higher level in hypoxia than that of the lowland breed. These results suggested that the stronger capacity of oxygen dissociation was an important characteristic of Tibetan chicken embryo to survive in hypoxia and the upregulating mode of carbonic anhydrase II mRNA might assist this dissociation. Therefore, for avian at high altitudes, the efficient dissociation of oxygen might reveal another aspect associated with the hypoxia adaptability.

Production of antibodies and development of enzyme-linked immunosorbent assay for valnemulin in porcine liver

Polyclonal and monoclonal antibodies against valnemulin, a new semi-synthetic antibiotic derivative of pleuromutilin administered to treat swine dysentery and pneumonia, were generated. To achieve high enzyme-linked immunosorbent assay sensitivity for valnemulin, several heterologous coating antigens were prepared and evaluated, differing in the length of the spacer arm and the conjugation site between valnemulin and carrier protein. After the optimisation of immuno-reagents dilution, the enzyme-linked immunosorbent assay, based on polyclonal antibody number 2 and one heterologous coating antigen, showed the highest sensitivity with an IC50 value for valnemulin of 0.96 ng/mL in buffer. For spiked porcine liver, an extraction procedure with a mixture of acetonitrile and 0.01 M hydrochloric acid (40:60 v/v) was proposed and no further sample pre-treatment other than 10 times dilution of the extract was necessary prior to analysis, which gave recovery values ranging from 75.7% to 89.4%. The dynamic assay range and the limit of detection of the assay were 2.4−49.9 and 1.67 µg/kg for porcine liver, respectively. The assay was compared with a confirmation method based on LC-MS/MS by using valnemulin-treated samples, and a satisfactory correlation between both methods was observed.

Aberrant gene expression in deceased transgenic cloned calves.

Several transgenic cloned species have been obtained; however, the efficiency of transgenic cloning remains very low, even lower than cloning. Many experiments have demonstrated abnormal growth and development, and inappropriate gene expression in cloned animals. In this study, we examined the expression of 19 development-related genes in lungs of three normal controls and three aberrant transgenic cloned calves. Results showed in transgenic cloned calves, 84.2% genes had decreased expression levels, however, 5.3% genes had increased levels. This study suggests transgenic cloning and the aberrant expression would cause abnormal growth and development in transgenic cloned calves. To our knowledge, this is the first time that gene expression was examined in transgenic cloned cattle. These findings may have some implications in understanding the low efficiency of the transgenic cloning.

Genetic uniqueness of Chinese village pig populations inferred from microsatellite markers

In this study, 19 microsatellite loci were genotyped for 10 Chinese village pig populations including 817 individuals to investigate their genetic characteristics. The allele frequencies, effective numbers of alleles (ne), average heterozygosity within populations (H), genetic differentiation between populations (Fst), and coefficient of gene differentiation (Gst) were calculated. The results showed that village populations had relatively large H and ne values, but with smaller average Gst, compared with indigenous purebred pig populations. The smaller average Gst (0.0386) suggested that the genetic difference between village populations was only 3.86%, and the other 96.14% was found within populations. Most of the pairwise Fst-values were significant (P < 0.05), demonstrating differentiation among populations. A neighbor-joining tree constructed from modified Cavalli-Sforza genetic distances divided Chinese village pig populations, Chinese indigenous pig breeds, and Euro-American pig breeds into 3 separate clusters. All of above genetic analyses showed that Chinese village pig populations are unique genetic resources, which could be used for future pig production.

Monocytes-macrophages phagocytosis as a potential marker for disease resistance in generation 1 of dwarf chickens

Monocytes-macrophages play an indispensable role in the immune system. The current study investigated the effect of selection for monocytes-macrophages phagocytosis on disease resistance in generation 1 (G1) of dwarf chickens. Five hundred dwarf chickens of generation 0 (G0) were divided into high and low phagocytic index (PI) groups (HPIG and LPIG, respectively) based on their PI of monocytes-macrophages at 290 d of age. Then, 2 x 2 mating combinations were conducted. Sixty G0 chickens from another dwarf chicken group were used to measure the levels of monocytes-macrophages phagocytosis at different developmental stages. Among a total of 2,500 randomly selected G1 chickens, 2,100 individuals were used for a surviving and growing test under adverse feeding circumstances, and the other 400 individuals were tested for Salmonella Pullorum challenge. The results showed that progenies of HPIG hens (female symbol) were more resistant to Salmonella Pullorum. After challenge, the death rate of progeny from HPIG female symbol (28.9%) was only 58% that of progeny from LPIG female symbol (49.4%, P < 0.001). In addition, the natural infection rate of Salmonella Pullorum before 207 d for offspring from HPIG female symbol (35.0%) was significantly lower than that for offspring from LPIG female symbol (48.3%, P < 0.001). The natural mortality before 56 d in progeny of HPIG female symbol (22.6%) was significantly lower than that in progeny of LPIG female symbol (29.1%) with a P-value of 0.001. The G1 chickens of HPIG G0 female symbol weighed more than those born to LPIG G0 female symbol at 28 and 42 d of age, whereas the difference was not statistically significant at 56 d of age. The heritability of monocytes-macrophages phagocytosis was 0.40, which was moderate. The PI values were at a low level before 126 d and increased dramatically until they declined significantly after 294 d. It could be concluded that phagocytosis of monocytes-macrophages is a marker for breeding excellent progeny with strong disease resistance.

Microarray analysis revealed that immunity-associated genes are primarily regulated by roxarsone in promoting broiler chicken (Gallus gallus domesticus) growth

Addition of roxarsone can significantly improve the growth of broiler chickens (Gallus gallus domesticus). Nevertheless, this application will lead to the contamination of the environment as well as animal products. Understanding the response of genes to roxarsone may bring about the discovery of new, safer substitutes. In this study, we monitored the expression of 8,935 genes in chicken breast muscle using microarrays. Analysis showed that 30 genes, such as the interleukin 3 regulated nuclear factor (NFIL3), the regulatory factor X-associated ankyrin-containing protein (RFXANK), the cleavage and polyadenylation-specific factor 3 (CPSF3), and the FK506 binding protein 9 (FKBP9), have consistently up or downregulated (fold change ≥1.5 or ≤0.6, P < 0.05, false discovery rate ≤0.05) throughout the medication periods. The results from microarray analysis were validated by real-time quantitative PCR. Further functional investigation showed that 13 of the identified genes are well documented, and surprisingly, 11 (85%) of these are related to immunity (5 are immunity and defense related, 4 are immunodeficiency disease related, 2 are immunosuppressive drug related), and the remaining 2 are energy metabolism related. These findings may suggest that supplement of roxarsone can improve the immunity of chickens through regulating the expression of associated genes, and as a result contribute to the growth promotion. Further research on the encoded proteins of the differentially expressed genes should provide more evidence for the potential mechanism.

Dietary supplemented antimicrobial peptide microcin J25 improves the growth performance, apparent total tract digestibility, fecal microbiota, and intestinal barrier function of weaned pigs

Microcin J25 (MccJ25) is an antimicrobial peptide produced by a fecal strain of Escherichia coli containing 21 AA. This study was performed primarily to evaluate the effects of MccJ25 as a potential substitute for antibiotics (AB) on growth performance, nutrient digestibility, fecal microbiota, and intestinal barrier function in weaned pigs. In the present study, 180 weaned pigs (7.98 ± 0.29 kg initial BW) were randomly assigned to 1 of 5 treatments, including a basal diet (CON) and CON supplemented with AB (20 mg/kg colistin sulfate; ABD) or 0.5, 1.0, and 2.0 mg/kg MccJ25. On d 0 to 14, dietary supplementation with MccJ25 and ABD had positive effects on ADG, ADFI, diarrhea incidence, and G:F ( < 0.05). Pigs fed the 2.0 mg/kg MccJ25 diet had greater ADG ( < 0.05) and marginally greater G:F ( < 0.10) compared with pigs fed the ABD diet. Compared with the CON diet, the 2.0 mg/kg MccJ25 diet sharply improved ( < 0.05) ADG and G:F and decreased ( < 0.05) diarrhea incidence (d 15 to 28 and d 0 to 28). Apparent digestibility of nutrients in pigs fed 1.0 and 2.0 mg/kg MccJ25 was improved ( < 0.05) compared with that of pigs fed CON and ABD. The serum cytokines IL-6 and IL-1β and tumor necrosis factor-α levels in pigs fed MccJ25 were greater than in pigs fed CON ( < 0.05). Additionally, the IL-10 concentration in pigs fed MccJ25 was sharply increased ( < 0.05) compared with that of pigs fed CON. Pigs fed 1.0 and 2.0 mg/kg MccJ25 diets had remarkably decreased lactate, diamine oxidase, and endotoxin concentrations and fecal numbers ( < 0.05) and improved fecal and numbers ( < 0.05). Compared with the ABD diet, the diet containing 2.0 mg/kg MccJ25 did not increase lactate, diamine oxidase, and endotoxin (d 14) concentrations ( < 0.05) or decrease the and (d 28) numbers ( < 0.05). The diets containing 1.0 and 2.0 mg/kg MccJ25 and ABD (d 28) improved lactate concentration and short-chain fatty acid concentrations, including acetate, propionate, and butyrate, in feces ( < 0.05). Moreover, the pigs fed 2.0 mg/kg MccJ25 had greater lactate, butyrate (d 14), and propionate concentrations than the pigs fed the ABD diet ( < 0.05). In conclusion, dietary supplemented MccJ25 effectively improved performance, attenuated diarrhea and systematic inflammation, enhanced intestinal barrier function, and improved fecal microbiota composition of weaned pigs. Therefore, MccJ25 could be a potential effective alternative to AB for weaned pigs.