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Featured researches published by N. Uzunbajakava.


Biophysical Journal | 2003

Nonresonant Confocal Raman Imaging of DNA and Protein Distribution in Apoptotic Cells

N. Uzunbajakava; Aufrid T.M. Lenferink; Yvonne M. Kraan; E. Volokhina; G.F.J.M. Vrensen; Jan Greve; Cornelis Otto

Nonresonant confocal Raman imaging has been used to map the DNA and the protein distributions in individual single human cells. The images are obtained on an improved homebuilt confocal Raman microscope. After statistical analysis, using singular value decomposition, the Raman images are reconstructed from the spectra covering the fingerprint region. The data are obtained at a step interval of approximately 250 nm and cover a field from 8- to 15- micro m square in size. Dwell times at each pixel are between 0.5 and 2 s, depending on the nature and the state of the cell under investigation. High quality nonresonant Raman images can only be obtained under these conditions using continuous wave high laser powers between 60 and 120 mW. We will present evidence that these laser powers can still safely be used to recover the chemical distributions in fixed cells. The developed Raman imaging method is used to image directly, i.e., without prior labeling, the nucleotide condensation and the protein distribution in the so-called nuclear fragments of apoptotic HeLa cells. In the control (nonapoptotic) HeLa cells, we show, for the first time by Raman microspectroscopy, the presence of the RNA in a cell nucleus.


Optics Letters | 2003

Combined Raman and continuous-wave-excited two-photon fluorescence cell imaging

N. Uzunbajakava; Cees Otto

We demonstrate a confocal optical microscope that combines cw two-photon-excited fluorescence microscopy with confocal Raman microscopy. With this microscope fast image acquisition with fluorescence imaging can be used to select areas of interest for subsequent chemical analysis with spontaneous Raman imaging. The distribution of the UV-absorbing fluorophore Hoechst 33342 in the apoptotic HeLa cells is measured in the combined cw two-photon-excited fluorescence and Raman microscopy modes. The 647-nm line of a Kr-ion laser is used to excite both the Raman scattering and the two-photon-excited fluorescence emission. The lateral and axial resolutions in the two imaging modes are compared by use of the Gaussian beam approximation and backprojection of the focal volume through the confocal pinhole.


Biomedical optics | 2003

Raman microscopy of cells: chemical imaging of apoptosis

N. Uzunbajakava; Jan Greve; Cees Otto

Singular value decomposition was applied to the set of the non-resonant Raman spectra, recorded during Raman imaging of the single apoptotic cell. The basis vectors and the corresponding singular values were assessed in terms of their statistical significance. The noise-containing basis vectors were rejected while keeping the meaningful ones. In this way the Raman images of the apoptotic cell were successfully reconstructed from the spectrally-filtered data matrix. The results are demonstrated on the spatial distribution of the DNA, protein and phospholipids, present in the fragments of the apoptotic cell.


Biopolymers | 2003

Nonresonant Raman imaging of protein distribution in single human cells

N. Uzunbajakava; Aufrid T.M. Lenferink; Yvonne M. Kraan; B. Willekens; G.F.J.M. Vrensen; Jan Greve; Cornelis Otto


Journal of the American Chemical Society | 2005

Spectroscopy and quantum chemical modeling reveal a predominant contribution of excitonic interactions to the bathochromic shift in α-crustacyanin, the blue carotenoprotein in the carapace of the lobster Homarus gammarus

Arjan A. C. van Wijk; Arnold Spaans; N. Uzunbajakava; Cees Otto; Huub J. M. de Groot; Johan Lugtenburg; Francesco Buda


Journal of the American Chemical Society | 2003

Resonance Raman imaging of the NADPH oxidase subunit cytochrome b558 in single neutrophilic granulocytes.

Henk-Jan van Manen; N. Uzunbajakava; Robin van Bruggen; Dirk Roos; Cees Otto


Polymer | 2005

A depth-resolved look at the network development in alkyd coatings by confocal Raman microspectroscopy

B. Marton; Leo G.J. van der Ven; Cees Otto; N. Uzunbajakava; Mark A. Hempenius; G. Julius Vancso


Imaging & Microscopy | 2004

Raman Microscopy on Single Cells: Imaging of Apoptosis and Phagocytosis at High Resolution

N. Uzunbajakava; H.J. van Manen; Cornelis Otto


Archive | 2004

Confocal Raman imaging of cytochrome b558 in single neutrophils

H.J. van Manen; N. Uzunbajakava; R. van Bruggen; D. Roos; Cornelis Otto


Proceedings of the Dutch Annual Conference on BioMedical Engineering | 2003

Raman imaging reveals phospholipids in single human lymphocytes

N. Uzunbajakava; Aufrid T.M. Lenferink; Yvonne M. Kraan; Jan Greve; Cornelis Otto; W.M.G.F. Pontenagel; Jan Feijen

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Cornelis Otto

MESA+ Institute for Nanotechnology

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G.F.J.M. Vrensen

Leiden University Medical Center

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H.J. van Manen

MESA+ Institute for Nanotechnology

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