Nabil Majdi

The relationship between epilithic biofilm stability and its associated meiofauna under two patterns of flood disturbance

Abstract.  Habitat stability is an important driver of ecological community composition and development. River epilithic biofilms are particularly unstable habitats for the establishment of benthic communities because they are regularly disturbed by floods. Our aim was to determine the influence of habitat instability on meiobenthic organisms. We hypothesized that hydrologic variables are the most important predictors of meiofauna distribution. We monitored epilithic communities (meiofauna and microalgae) with a high sampling frequency during 2 sampling periods with contrasting hydrodynamic patterns in a temperate river (the Garonne, France). Nematodes and rotifers dominated meiofaunal assemblages. The critical flow velocity threshold for their maintenance in the biofilm was ∼30 cm/s, a result suggesting that meiofauna can resist higher flow velocity within the biofilm than within sediments. Nematode distribution was primarily influenced by the duration of undisturbed periods, whereas rotifer distribution was also correlated with the thickness of the biofilm. During the periods after floods, rotifers were faster colonizers than nematodes. Collectively, our results show that flow regime was an essential driver for biofilm community development.

Predator effects on a detritus‐based food web are primarily mediated by non‐trophic interactions

Predator effects on ecosystems can extend far beyond their prey and are often not solely lethally transmitted. Change in prey traits in response to predation risk can have important repercussions on community assembly and key ecosystem processes (i.e. trait-mediated indirect effects). In addition, some predators themselves alter habitat structure or nutrient cycling through ecological engineering effects. Tracking these non-trophic pathways is thus an important, yet challenging task to gain a better grasp of the functional role of predators. Multiple lines of evidence suggest that, in detritus-based food webs, non-trophic interactions may prevail over purely trophic interactions in determining predator effects on plant litter decomposition. This hypothesis was tested in a headwater stream by modulating the density of a flatworm predator (Polycelis felina) in enclosures containing oak (Quercus robur) leaf litter exposed to natural colonization by small invertebrates and microbial decomposers. Causal path modelling was used to infer how predator effects propagated through the food web. Flatworms accelerated litter decomposition through positive effects on microbial decomposers. The biomass of prey and non-prey invertebrates was not negatively affected by flatworms, suggesting that net predator effect on litter decomposition was primarily determined by non-trophic interactions. Flatworms enhanced the deposition and retention of fine sediments on leaf surface, thereby improving leaf colonization by invertebrates - most of which having strong affinities with interstitial habitats. This predator-induced improvement of habitat availability was attributed to the sticky nature of the mucus that flatworms secrete in copious amount while foraging. Results of path analyses further indicated that this bottom-up ecological engineering effect was as powerful as the top-down effect on invertebrate prey. Our findings suggest that predators have the potential to affect substantially carbon flow and nutrient cycling in detritus-based ecosystems and that this impact cannot be fully appreciated without considering non-trophic effects.

Feeding of biofilm-dwelling nematodes examined using HPLC-analysis of gut pigment contents

The natural feeding behaviour of the nematodes Chromadorina bioculata (Schultze in Carus 1857) and Chromadorina viridis (Linstow 1876) was studied in situ, within epilithic biofilms of the Garonne River (France). Based on their feeding-type characteristics and population dynamics, it was hypothesised that these species feed selectively on microphytobenthos (MPB) within the biofilm, and that among MPB groups, diatoms are preferred. High-performance liquid chromatography (HPLC) was used for separation, identification and quantification of pigments both in nematode guts and in the biofilm. This is the first time that nematode gut pigment contents were examined under natural conditions. Diatoms dominated the MPB which also comprised cyanobacteria and green microalgae. The comparison between chlorophyll a content in nematode guts versus in the biofilm showed that C. bioculata and C. viridis fed opportunistically (non-selectively) on MPB within the biofilm. Only diatom biomarker pigments were found in nematode guts suggesting that they could preferentially fed on diatoms among MPB groups. However, the non-detection of biomarker pigments for other microphyte groups could be also linked to HPLC detection limits. It was estimated that Chromadorina nematodes daily ingested on average 0.03–0.67% of the MPB standing stock. This grazing covered only a small part of their energetic requirements, suggesting that besides MPB they probably also fed on other biofilm food sources. Some considerations on the applicability of the HPLC gut pigment analysis technique for the examination of nematode feeding are also presented.

Selective Feeding of Bdelloid Rotifers in River Biofilms

In situ pigment contents of biofilm-dwelling bdelloid rotifers of the Garonne River (France) were measured by high performance liquid chromatography (HPLC) and compared with pigment composition of surrounding biofilm microphytobenthic communities. Among pigments that were detected in rotifers, the presence of carotenoids fucoxanthin and myxoxanthophyll showed that the rotifers fed on diatoms and cyanobacteria. Unexpectedly, while diatoms strongly dominated microphytobenthic communities in terms of biomass, HPLC results hinted that rotifers selectively ingested benthic filamentous cyanobacteria. In doing so, rotifers could daily remove a substantial fraction (up to 28%) of this cyanobacterial biomass. The possibility that the rotifers hosted symbiotic myxoxanthophyll-containing cyanobacteria was examined by localisation of chlorophyll fluorescence within rotifers using confocal laser scanning microscopy (CLSM). CLSM results showed an even distribution of quasi–circular fluorescent objects (FO) throughout rotifer bodies, whereas myxoxanthophyll is a biomarker pigment of filamentous cyanobacteria, so the hypothesis was rejected. Our results also suggest that rotifers converted β-carotene (provided by ingested algae) into echinenone, a photoprotective pigment. This study, which is the first one to detail in situ pigment contents of rotifers, clearly shows that the role of cyanobacteria as a food source for meiobenthic invertebrates has been underestimated so far, and deserves urgent consideration.

Contribution of epilithic diatoms to benthic-pelagic coupling in a temperate river

Water residence time in the middle course of rivers is often too short to allow substantial phytoplankton development, and primary production is essentially provided by benthic phototrophic biofilms. However, cells occurring in the water column might derive from biofilm microalgae, and, reciprocally, sedimenting microalgae could represent a continuous source of colonizers for benthic biofilms. A comparative study of biofilm and pelagic microphytic communities (with special focus on diatoms) was carried out over 15 mo in the Garonne River, France. Diatoms dominated both biofilm and pelagic microphytic communities. Typically benthic diatoms were found in high abundance in the water column, and their biomass in the water was correlated with their biomass in the biofilm, indicating the benthic origin of these cells. Variations in river discharge and temperature drove the temporal distribution of benthic and pelagic communities: under high flow mixing (winter) communities showed the greatest similarity, and during low flow (summer)they differed the most. Even during low flow, typical benthic species were observed in the water column, indicating that benthic−pelagic exchanges were not exclusively due to high water flow. Moreover, during low flow periods, planktonic diatoms typically settled within biofilms, presumably because of higher water residence times, and/or upstream reservoir flushing.

Quantification of sediment reworking by the Asiatic clam Corbicula fluminea Müller, 1774.

Abstract Active organisms modify the substratum in which they dwell. This process, called “bioturbation”, affects the way that biogeochemical fluxes are mediated at the substratum–water interface. In the frame of this work, the bioturbation potential of the Asiatic clam Corbicula fluminea was characterized and quantified. We measured the displacement of fluorescent particles by C. fluminea burying in a size-based experimental design in order to explore the effects of body-size on sediment reworking. Our results stress that C. fluminea belongs to the functional group of biodiffusors, and that C. fluminea can be considered as an intermediate sediment reworker. We suggest that bioturbation was mainly induced by the pedal-feeding activity of the clams. Results also showed that, though large clams induced displacement of particles deeper into the sediment, small clams showed the highest net sediment reworking activity. This result was in contrast to the initial hypothesis of biovolume as the main driver for particle displacement by bioturbating organisms. Life-history traits and specific features of pedal-feeding could explain the observed pattern.

Vertical and temporal distribution of free-living nematodes dwelling in two sandy-bed streams fed by helocrene springs

We monitored for 1 year the sediment nematofauna of two headwater streams located near water resurgence from typical helocrene springs. Nematode community composition, benthic organic matter (BOM) and chlorophyll a(BChl a) were assessed in two sediment layers (0-5 and 5-10 cm depth), providing insights into nematode vertical distribution. Globally, the density, diversity and functional richness of nematodes were lower in the upper sediments, although important amounts of BChl awere available there. The assemblages differed markedly between springs, with only 41 shared species from a total of 120 species, suggesting stochastic horizontal distribution even at small geographical scales (<5 km). Bacterial-feeding nematodes dominated in the upper sediments, whereas omnivorous, fungal- and plant-feeding nematodes thrived in the deeper sediments. Reproduction by the dominant algal-feeding species, Prodesmodora arctica, was detected in August. The substantial presence of juveniles throughout the year highlighted the importance of parthenogenetic reproduction.

Life-History Traits of the Model Organism Pristionchus pacificus Recorded Using the Hanging Drop Method: Comparison with Caenorhabditis elegans

The nematode Pristionchus pacificus is of growing interest as a model organism in evolutionary biology. However, despite multiple studies of its genetics, developmental cues, and ecology, the basic life-history traits (LHTs) of P. pacificus remain unknown. In this study, we used the hanging drop method to follow P. pacificus at the individual level and thereby quantify its LHTs. This approach allowed direct comparisons with the LHTs of Caenorhabditis elegans recently determined using this method. When provided with 5×109 Escherichia coli cells ml–1 at 20°C, the intrinsic rate of natural increase of P. pacificus was 1.125 (individually, per day); mean net production was 115 juveniles produced during the life-time of each individual, and each nematode laid an average of 270 eggs (both fertile and unfertile). The mean age of P. pacificus individuals at first reproduction was 65 h, and the average life span was 22 days. The life cycle of P. pacificus is therefore slightly longer than that of C. elegans, with a longer average life span and hatching time and the production of fewer progeny.

Nematodes in caves: a historical perspective on their occurrence, distribution and ecological relevance

Caves and cave-dwelling biota have fascinated scientists for centuries. Nevertheless, there is a considerable lack of information on subterranean realms and the ecosystems they host. Nematoda, for example, is a group of invertebrates that plays an important role in the functioning of epigean ecosystems, but whether or not the same is true for subterranean ecosystems remains unknown. For this reason it was decided to conduct an in-depth review of all reports related to cave-dwelling nematodes in order to provide a sound basis for future studies. A literature survey of 41 scientific works from over the last 138 years revealed 295 unique taxa reported from 78 different cave systems. The historical trends in cave nematology, peculiar findings from important studies and an ecological classification system are discussed. Lastly, the trophic distribution of the reported taxa is presented, whilst nematodes from other (non-cave) subterranean environments are also considered.

Effects of flatworm predators on sediment communities and ecosystem functions: a microcosm approach

Predators affect prey and non-prey communities through consumptive effects (CE) and non-consumptive effects (NCE), with consequences for ecosystem functions. Aquatic sediments are entanglements of particles that house diverse communities of microbes and invertebrates involved in ecosystem functions. In this study, we used experimental sediment cores as microcosms to explore the effects of two predatory flatworm species: Polycelis tenuis and Planaria torva. Flatworms secrete mucus for locomotion. Their motility results in particle displacement, which in turn increases the local availability of labile compounds. In this study we asked: (1) How do predators affect biomass allocation in a comprehensive community? (2) What is the impact of these effects on ecosystem functions? Our results showed that flatworms increased the sediment reworking rate and affected the packaging of biomass in prey (e.g., oligochaetes) and non-prey (e.g., protozoa) organisms through both CE and NCE. Causal links between community structure and ecosystem functions suggested different pathways of predator control: Polycelis indirectly influenced P availability, which increased the biomass of bacteria and protozoa, whereas Planaria elicited a trophic cascade and had a wider ranging diet than Polycelis. Our results support the use of flatworms as models to link the functions of organisms with those of ecosystems.