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Dive into the research topics where Naotaka Yamada is active.

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Featured researches published by Naotaka Yamada.


The Plant Cell | 2013

Nitrated cyclic GMP modulates guard cell signaling in Arabidopsis.

Takahiro Joudoi; Yudai Shichiri; Nobuto Kamizono; Takaaki Akaike; Tomohiro Sawa; Jun Yoshitake; Naotaka Yamada; Sumio Iwai

This work examines the role of the nitrated derivative of cyclic GMP (cGMP), 8-nitro-cGMP, in guard cell signaling downstream of nitric oxide (NO) and abscisic acid, finding that 8-nitro-cGMP synthesis is induced by abscisic acid, NO, and reactive oxygen species and that 8-nitro-cGMP triggers stomatal closure. Nitric oxide (NO) is a ubiquitous signaling molecule involved in diverse physiological processes, including plant senescence and stomatal closure. The NO and cyclic GMP (cGMP) cascade is the main NO signaling pathway in animals, but whether this pathway operates in plant cells, and the mechanisms of its action, remain unclear. Here, we assessed the possibility that the nitrated cGMP derivative 8-nitro-cGMP functions in guard cell signaling. Mass spectrometry and immunocytochemical analyses showed that abscisic acid and NO induced the synthesis of 8-nitro-cGMP in guard cells in the presence of reactive oxygen species. 8-Nitro-cGMP triggered stomatal closure, but 8-bromoguanosine 3′,5′-cyclic monophosphate (8-bromo-cGMP), a membrane-permeating analog of cGMP, did not. However, in the dark, 8-bromo-cGMP induced stomatal opening but 8-nitro-cGMP did not. Thus, cGMP and its nitrated derivative play different roles in the signaling pathways that lead to stomatal opening and closure. Moreover, inhibitor and genetic studies showed that calcium, cyclic adenosine-5′-diphosphate-ribose, and SLOW ANION CHANNEL1 act downstream of 8-nitro-cGMP. This study therefore demonstrates that 8-nitro-cGMP acts as a guard cell signaling molecule and that a NO/8-nitro-cGMP signaling cascade operates in guard cells.


Insect Molecular Biology | 2013

Catalytic function of an Epsilon-class glutathione S-transferase of the silkworm

Kohji Yamamoto; Yoichi Aso; Naotaka Yamada

The glutathione S‐transferase (GST) superfamily is involved in the detoxification of various xenobiotics. A silkworm GST, belonging to a previously reported Epsilon‐class GST family, was identified, named bmGSTE, cloned, and produced in Escherichia coli. Investigation of this enzymes properties showed that it was able to catalyse glutathione (GSH) with 1‐chloro‐2,4‐dinitrobenzene and ethacrynic acid, and also that it possessed GSH‐dependent peroxidase activity. The enzymes highly conserved amino acid residues, including Ser11, His53, Val55, Ser68 and Arg112, were of interest regarding their possible involvement in its catalytic activity. These residues were replaced with alanine by site‐directed mutagenesis and subsequent kinetic analysis of bmGSTE mutants indicated that His53, Val55, and Ser68 were important for enzyme function.


Archives of Biochemistry and Biophysics | 2015

Structural characterization of the catalytic site of a Nilaparvata lugens delta-class glutathione transferase.

Kohji Yamamoto; Akifumi Higashiura; Md. Tofazzal Hossain; Naotaka Yamada; Takahiro Shiotsuki; Atsushi Nakagawa

Glutathione transferases (GSTs) are a major class of detoxification enzymes that play a central role in the defense against environmental toxicants and oxidative stress. Here, we studied the crystal structure of a delta-class glutathione transferase from Nilaparvata lugens, nlGSTD, to gain insights into its catalytic mechanism. The structure of nlGSTD in complex with glutathione, determined at a resolution of 1.7Å, revealed that it exists as a dimer and its secondary and tertiary structures are similar to those of other delta-class GSTs. Analysis of a complex between nlGSTD and glutathione showed that the bound glutathione was localized to the glutathione-binding site. Site-directed mutagenesis of nlGSTD mutants indicated that amino acid residues Ser11, His52, Glu66, and Phe119 contribute to catalytic activity.


Scientific Reports | 2016

Identification of a diazinon-metabolizing glutathione S-transferase in the silkworm, Bombyx mori

Kohji Yamamoto; Naotaka Yamada

The glutathione S-transferase superfamily play key roles in the metabolism of numerous xenobiotics. We report herein the identification and characterization of a novel glutathione S-transferase in the silkworm, Bombyx mori. The enzyme (bmGSTu2) conjugates glutathione to 1-chloro-2,4-dinitrobenzene, as well as metabolizing diazinon, one of the organophosphate insecticides. Quantitative reverse transcription–polymerase chain reaction analysis of transcripts demonstrated that bmGSTu2 expression was induced 1.7-fold in a resistant strain of B. mori. Mutagenesis of putative amino acid residues in the glutathione-binding site revealed that Ile54, Glu66, Ser67, and Asn68 are crucial for enzymatic function. These results provide insights into the catalysis of glutathione conjugation in silkworm by bmGSTu2 and into the detoxification of organophosphate insecticides.


Biological Invasions | 2014

Host shift capability of a specialist seed predator of an invasive plant: roles of competition, population genetics and plant chemistry

Midori Tuda; L.-H. Wu; Naotaka Yamada; C.-P. Wang; Wen-Jer Wu; Sawai Buranapanichpan; Kumiko Kagoshima; Z.-Q. Chen; K. K. Teramoto; B. R. Kumashiro; R. Heu

Acanthoscelides macrophthalmus is a seed predator that has become widely distributed along with its native host, Leucaena leucocephala (Mimosoideae), which is a neotropical leguminous tree and one of the most invasive plants worldwide. Previous studies revealed that A. macrophthalmus is able to host-shift to several mimosoid species. Here, we aim to test the host-shift potential to other mimosoid and non-mimosoid plants and possible roles of interspecific competition, genetic background, and plant chemistry in host-shift. First, we found that A. macrophthalmus predator completed development on two new hosts: pigeon pea Cajanus cajan and Cajanus scarabaeoides (Faboideae), by rearing from seeds collected in South/Southeast Asia and Hawaii. In contrast, in most regions, both Cajanus species were infested only by other beetle species. Second, we performed no-choice tests using 11 leguminous plants, covering all three subfamilies as potential hosts, including the two new hosts. A Taiwanese A. macrophthalmus population reared in the laboratory on Leucaena did not deposit eggs on any of the seeds of each tested species. To compare host-shift responses between populations, we also used a Hawaiian A. macrophthalmus population that had completed its development on freshly collected Leucaena seeds from the field. This population deposited eggs onto and hatching larvae burrowed into C. cajan seeds, although none developed beyond the larval stage. Third, the surface chemical composition of seed-pods of L. leucocephala and the two Cajanus species was dissimilar, although that of seeds was highly similar. Finally, all of the host-shifting A. macrophthalmus populations shared the same haplotypic group.


PLOS ONE | 2014

Glutathione-binding site of a bombyx mori theta-class glutathione transferase.

M. D. Tofazzal Hossain; Naotaka Yamada; Kohji Yamamoto

The glutathione transferase (GST) superfamily plays key roles in the detoxification of various xenobiotics. Here, we report the isolation and characterization of a silkworm protein belonging to a previously reported theta-class GST family. The enzyme (bmGSTT) catalyzes the reaction of glutathione with 1-chloro-2,4-dinitrobenzene, 1,2-epoxy-3-(4-nitrophenoxy)-propane, and 4-nitrophenethyl bromide. Mutagenesis of highly conserved residues in the catalytic site revealed that Glu66 and Ser67 are important for enzymatic function. These results provide insights into the catalysis of glutathione conjugation in silkworm by bmGSTT and into the metabolism of exogenous chemical agents.


Glycobiology | 2011

Structural analysis of α1,3-linked galactose-containing oligosaccharides in Schizosaccharomyces pombe mutants harboring single and multiple α-galactosyltransferase genes disruptions

Takao Ohashi; Shin-ichi Nakakita; Wataru Sumiyoshi; Naotaka Yamada; Yuka Ikeda; Naotaka Tanaka; Kaoru Takegawa

In the fission yeast Schizosaccharomyces pombe, galactose (Gal) residues are transferred to N- and O-linked oligosaccharides of glycoproteins by galactosyltransferases in the lumen of the Golgi apparatus. In S. pombe, the major in vitro α1,2-galactosyltransferase activity has been purified, the gma12(+) gene has been cloned, and three α-galactosyltransferase genes (gmh1(+)-gmh3(+)) have also been partially characterized. In this study, we found three additional uncharacterized genes with homology to gmh1(+) (gmh4(+)-gmh6(+)) in the fission yeast genome sequence. All possible single disruption mutants and the septuple disruption strain were constructed and characterized. The electrophoretic mobility of acid phosphatase prepared from gma12Δ, gmh2Δ, gmh3Δ and gmh6Δ mutants was higher than that from wild type, indicating that Gma12p, Gmh2p, Gmh3p and Gmh6p are required for the galactosylation of N-linked oligosaccharides. High-performance liquid chromatography (HPLC) analysis of pyridylaminated O-linked oligosaccharides from each single mutant showed that Gma12p, Gmh2p and Gmh6p are involved in galactosylation of O-linked oligosaccharides. The septuple mutant exhibited similar drug and temperature sensitivity as a gms1Δ mutant that is incapable of galactosylation. Oligosaccharide structural analysis based on HPLC and methylation analysis revealed that the septuple mutant still contained oligosaccharides consisting of α1,3-linked Gal residues, indicating that an unknown α1,3-galactosyltransferase activity was still present in the septuple mutant.


Bioscience, Biotechnology, and Biochemistry | 2002

Bleaching activity of 4-phenyl-3-(substituted benzylthio)-4H-1,2,4- triazoles

Naotaka Yamada; Daisuke Kusano; Eiichi Kuwano

A variety of 4-aryl- and 4-alkyl-3-(substituted benzylthio)-4H-1,2,4-triazoles were prepared and evaluated for their bleaching activity by the lettuce seedling test. Among the series of tested compounds, 4-(3-fluorophenyl)-3-(4-trifluoromethylbenzylthio)-4H-1,2,4-triazole (39) exhibited the highest bleaching activity, causing complete bleaching symptoms at 10 μM. In the dark condition, compound 39 inhibited the formation of such carotenoids as β-carotene, violaxanthin, neoxanthin and lutein, resulting in the formation of ζ-carotene, phytoene, phytofluene and β-zeacarotene, which were not detected in the untreated control. Treatment by compound 39 at 50 μM resulted in the amount of accumulated ζ-carotene being seven-fold higher than that of phytoene, phytofluene and β-zeacarotene. These results suggest that compound 39 might have interfered with desaturation, especially ζ-carotene desaturation, during carotenoid biosynthesis.


Bioscience, Biotechnology, and Biochemistry | 2007

Juvenile hormone activity of ethyl 4-(2-aryloxyhexyloxy)benzoates with precocious metamorphosis-inducing activity

Norihiro Fujita; Kiyo Ashibe; Naotaka Yamada; Takahiro Shiotsuki; Makoto Kiuchi; Eiichi Kuwano

Ethyl 4-[2-(6-methyl-3-pyridyloxy)hexyloxy]benzoate (1) and ethyl 4-(2-phenoxyhexyloxy)benzoate (2), which induce precocious metamorphosis in larvae of Bombyx mori, a clear sign of juvenile hormone (JH) deficiency, showed JH activity when topically applied to allatectomized 4th instar larvae of B. mori. Compounds 1 and 2 induced precocious metamorphosis with doses at which they were effective as JH agonists.


Journal of Pesticide Science | 2016

Biochemical characterization of an unclassified glutathione S-transferase of Plutella xylostella

Kohji Yamamoto; Aiko Hirowatari; Takahiro Shiotsuki; Naotaka Yamada

cDNA encoding an unclassified glutathione S-transferase (GST) of the diamondback moth, Plutella xylostella, was cloned by reverse transcriptase-polymerase chain reaction. The resulting clone was sequenced and the amino acid sequence deduced, revealing 67%-73% identities with unclassified GSTs from other organisms. A recombinant protein was functionally overexpressed in Escherichia coli cells in a soluble form and purified to homogeneity. The enzyme was capable to catalyze the transformation of 1-chloro-2,4-dinitrobenzene and ethacrynic acid with glutathione. A competition assay revealed that GST activity was inhibited by insecticides, suggesting that the enzyme could contribute to insecticide metabolism in the diamondback moth.

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Takahiro Shiotsuki

National Agriculture and Food Research Organization

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