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Dive into the research topics where Ngoc Tran is active.

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Featured researches published by Ngoc Tran.


Nature | 2011

Modelling schizophrenia using human induced pluripotent stem cells

Kristen J. Brennand; Anthony Simone; Jessica Jou; Chelsea Gelboin-Burkhart; Ngoc Tran; Sarah Sangar; Yan Li; Yangling Mu; Gong Chen; Diana Yu; Shane McCarthy; Jonathan Sebat; Fred H. Gage

Schizophrenia (SCZD) is a debilitating neurological disorder with a world-wide prevalence of 1%; there is a strong genetic component, with an estimated heritability of 80–85%. Although post-mortem studies have revealed reduced brain volume, cell size, spine density and abnormal neural distribution in the prefrontal cortex and hippocampus of SCZD brain tissue and neuropharmacological studies have implicated dopaminergic, glutamatergic and GABAergic activity in SCZD, the cell types affected in SCZD and the molecular mechanisms underlying the disease state remain unclear. To elucidate the cellular and molecular defects of SCZD, we directly reprogrammed fibroblasts from SCZD patients into human induced pluripotent stem cells (hiPSCs) and subsequently differentiated these disorder-specific hiPSCs into neurons (Supplementary Fig. 1). SCZD hiPSC neurons showed diminished neuronal connectivity in conjunction with decreased neurite number, PSD95-protein levels and glutamate receptor expression. Gene expression profiles of SCZD hiPSC neurons identified altered expression of many components of the cyclic AMP and WNT signalling pathways. Key cellular and molecular elements of the SCZD phenotype were ameliorated following treatment of SCZD hiPSC neurons with the antipsychotic loxapine. To date, hiPSC neuronal pathology has only been demonstrated in diseases characterized by both the loss of function of a single gene product and rapid disease progression in early childhood. We now report hiPSC neuronal phenotypes and gene expression changes associated with SCZD, a complex genetic psychiatric disorder.


Molecular Psychiatry | 2015

Phenotypic differences in hiPSC NPCs derived from patients with schizophrenia.

Kristen J. Brennand; Jeffrey N. Savas; Yongsung Kim; Ngoc Tran; Anthony Simone; Kazue Hashimoto-Torii; Kristin G. Beaumont; H. J. Kim; Aaron Topol; Ian Ladran; M. Abdelrahim; B. Matikainen-Ankney; Shih Hui Chao; Milan Mrksich; Pasko Rakic; Gang Fang; Bin Zhang; John R. Yates; Fred H. Gage

Consistent with recent reports indicating that neurons differentiated in vitro from human-induced pluripotent stem cells (hiPSCs) are immature relative to those in the human brain, gene expression comparisons of our hiPSC-derived neurons to the Allen BrainSpan Atlas indicate that they most resemble fetal brain tissue. This finding suggests that, rather than modeling the late features of schizophrenia (SZ), hiPSC-based models may be better suited for the study of disease predisposition. We now report that a significant fraction of the gene signature of SZ hiPSC-derived neurons is conserved in SZ hiPSC neural progenitor cells (NPCs). We used two independent discovery-based approaches—microarray gene expression and stable isotope labeling by amino acids in cell culture (SILAC) quantitative proteomic mass spectrometry analyses—to identify cellular phenotypes in SZ hiPSC NPCs from four SZ patients. From our findings that SZ hiPSC NPCs show abnormal gene expression and protein levels related to cytoskeletal remodeling and oxidative stress, we predicted, and subsequently observed, aberrant migration and increased oxidative stress in SZ hiPSC NPCs. These reproducible NPC phenotypes were identified through scalable assays that can be applied to expanded cohorts of SZ patients, making them a potentially valuable tool with which to study the developmental mechanisms contributing to SZ.


Molecular Psychiatry | 2012

Modeling psychiatric disorders at the cellular and network levels.

Kristen J. Brennand; Anthony Simone; Ngoc Tran; Fred H. Gage

Although psychiatric disorders such as autism spectrum disorders, schizophrenia and bipolar disorder affect a number of brain regions and produce a complex array of clinical symptoms, basic phenotypes likely exist at the level of single neurons and simple networks. Being highly heritable, it is hypothesized that these disorders are amenable to cell-based studies in vitro. Using induced pluripotent stem cell-derived neurons and/or induced neurons from fibroblasts, limitless numbers of live human neurons can now be generated from patients with a genetic background permissive to the disease state. We predict that cell-based studies will ultimately contribute to our understanding of the initiation, progression and treatment of these psychiatric disorders.


Schizophrenia Bulletin | 2013

Modeling Schizophrenia Using Induced Pluripotent Stem Cell–Derived and Fibroblast-Induced Neurons

Ngoc Tran; Ian Ladran; Kristen J. Brennand

Although schizophrenia affects a number of brain regions and produces a range of clinical symptoms, we believe its origins lie at the level of single neurons and simple networks. Owing to this, as well as to its high degree of heritability, we hypothesize that schizophrenia is amenable to cell-based studies in vitro. Using induced pluripotent stem cell-derived neurons and/or fibroblast-induced neurons, a limitless quantity of live human neurons can now be generated from patient skin biopsies. We predict that cell-based studies will ultimately contribute to our understanding of the molecular and cellular underpinnings of this debilitating disorder.


Journal of Visualized Experiments | 2015

A Guide to Generating and Using hiPSC Derived NPCs for the Study of Neurological Diseases

Aaron Topol; Ngoc Tran; Kristen J. Brennand

Post-mortem studies of neurological diseases are not ideal for identifying the underlying causes of disease initiation, as many diseases include a long period of disease progression prior to the onset of symptoms. Because fibroblasts from patients and healthy controls can be efficiently reprogrammed into human induced pluripotent stem cells (hiPSCs), and subsequently differentiated into neural progenitor cells (NPCs) and neurons for the study of these diseases, it is now possible to recapitulate the developmental events that occurred prior to symptom onset in patients. We present a method by which to efficiently differentiate hiPSCs into NPCs, which in addition to being capable of further differentiation into functional neurons, can also be robustly passaged, freeze-thawed or transitioned to grow as neurospheres, enabling rapid genetic screening to identify the molecular factors that impact cellular phenotypes including replication, migration, oxidative stress and/or apoptosis. Patient derived hiPSC NPCs are a unique platform, ideally suited for the empirical testing of the cellular or molecular consequences of manipulating gene expression.


Wiley Interdisciplinary Reviews: Systems Biology and Medicine | 2013

Neural stem and progenitor cells in health and disease

Ian Ladran; Ngoc Tran; Aaron Topol; Kristen J. Brennand

Neural stem/progenitor cells (NSPCs) have the potential to differentiate into neurons, astrocytes, and/or oligodendrocytes. Because these cells can be expanded in culture, they represent a vast source of neural cells. With the recent discovery that patient fibroblasts can be reprogrammed directly into induced NSPCs, the regulation of NSPC fate and function, in the context of cell‐based disease models and patient‐specific cell‐replacement therapies, warrants review. WIREs Syst Biol Med 2013, 5:701–715. doi: 10.1002/wsbm.1239


Molecular Psychiatry | 2015

Dopaminergic differentiation of schizophrenia hiPSCs.

Brigham J. Hartley; Ngoc Tran; Ian Ladran; Kathryn Reggio; Kristen J. Brennand

Robicsek et al.1 adopted a protocol whereby neural induction occurs via dual SMAD inhibition in a monolayer culture (using the BMP inhibitor Noggin and the TGFβ inhibitor SB431542), followed by DA patterning through the addition of SHH for five days, and then SHH, FGF8, BDNF and ascorbic acid for four additional days (SI Table 1).2 Using TH and DAT as markers of DA neurons1, the authors demonstrated a significant defect in the ability of the SZ hiPSC lines to differentiate to DA neurons. Within the mammalian brain, however, the expression of TH3 and DAT4, 5 is widespread and thus not solely indicative of the DA neuronal subtypes most relevant to SZ (reviewed in4).


Nature | 2011

Erratum: Modelling schizophrenia using human induced pluripotent stem cells

Kristen J. Brennand; Anthony Simone; Jessica Jou; Chelsea Gelboin-Burkhart; Ngoc Tran; Sarah Sangar; Yan Li; Yangling Mu; Gong Chen; Diana Yu; Shane McCarthy; Jonathan Sebat; Fred H. Gage

This corrects the article DOI: 10.1038/nature09915


Cell Reports | 2016

Dysregulation of miRNA-9 in a Subset of Schizophrenia Patient-Derived Neural Progenitor Cells

Aaron Topol; Shijia Zhu; Brigham J. Hartley; Jane A. English; Mads Engel Hauberg; Ngoc Tran; Chelsea Ann Rittenhouse; Anthony Simone; Douglas M. Ruderfer; Jessica S. Johnson; Ben Readhead; Yoav Hadas; Peter Gochman; Ying-Chih Wang; Hardik Shah; Gerard Cagney; Judith L. Rapoport; Fred H. Gage; Joel T. Dudley; Pamela Sklar; Manuel Mattheisen; David Cotter; Gang Fang; Kristen J. Brennand


Biological Psychiatry | 2015

Altered WNT Signaling in Human Induced Pluripotent Stem Cell Neural Progenitor Cells Derived from Four Schizophrenia Patients.

Aaron Topol; Shijia Zhu; Ngoc Tran; Anthony Simone; Gang Fang; Kristen J. Brennand

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Kristen J. Brennand

Icahn School of Medicine at Mount Sinai

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Anthony Simone

Salk Institute for Biological Studies

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Aaron Topol

Icahn School of Medicine at Mount Sinai

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Fred H. Gage

Salk Institute for Biological Studies

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Ian Ladran

Icahn School of Medicine at Mount Sinai

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Gang Fang

Icahn School of Medicine at Mount Sinai

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Brigham J. Hartley

Icahn School of Medicine at Mount Sinai

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Chelsea Gelboin-Burkhart

Salk Institute for Biological Studies

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Diana Yu

Salk Institute for Biological Studies

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Gong Chen

Pennsylvania State University

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