Nguyen Minh Tam

Structure Assignment, Electronic Properties, and Magnetism Quenching of Endohedrally Doped Neutral Silicon Clusters, SinCo (n = 10–12)

The structures of neutral cobalt-doped silicon clusters have been assigned by a combined experimental and theoretical study. Size-selective infrared spectra of neutral Si(n)Co (n = 10-12) clusters are measured using a tunable IR-UV two-color ionization scheme. The experimental infrared spectra are compared with calculated spectra of low-energy structures predicted at the B3P86 level of theory. It is shown that the Si(n)Co (n = 10-12) clusters have endohedral caged structures, where the silicon frameworks prefer double-layered structures encapsulating the Co atom. Electronic structure analysis indicates that the clusters are stabilized by an ionic interaction between the Co dopant atom and the silicon cage due to the charge transfer from the silicon valence sp orbitals to the cobalt 3d orbitals. Strong hybridization between the Co dopant atom and the silicon host quenches the local magnetic moment on the encapsulated Co atom.

Structure, Thermochemical Properties, and Growth Sequence of Aluminum-Doped Silicon Clusters SinAlm (n = 1–11, m = 1–2) and Their Anions

A systematic examination of the aluminum doped silicon clusters, Si(n)Al(m) with n = 1-11 and m = 1-2, in both neutral and anionic states, is carried out using quantum chemical calculations. Lowest-energy equilibrium structures of the clusters considered are identified on the basis of G4 energies. High accuracy total atomization energies and thermochemical properties are determined for the first time using the G4 and CCSD(T)/CBS (coupled-cluster theory with complete basis set up to n = 3) methods. In each size, substitution of Si atoms at different positions of a corresponding pure silicon clusters by Al dopants invariably leads to a spectrum of distinct binary structures but having similar shape and comparable energy content. Such an energetic degeneracy persists in the larger cluster sizes, in particular for the anions. The equilibrium growth sequences for Al-doped Si clusters emerge as follows: (i) neutral singly doped Si(n)Al clusters favor Al atom substitution into a Si position in the structure of the corresponding cation Si(n+1)(+), whereas the anionic Si(n)Al(-) has one Si atom of the isoelectronic neutral Si(n+1) being substituted by the Al impurity; and (ii) for doubly doped Si(n)Al2(0/-) clusters, the neutrals have the shape of Si(n+1) counterparts in which one Al atom substitutes a Si atom and the other Al adds on an edge or a face of it, whereas the anions have both Al atoms substitute two Si atoms in the Si(n+2)(+) frameworks. The Al dopant also tends to avoid high coordination position.

Singly and doubly lithium doped silicon clusters: Geometrical and electronic structures and ionization energies

The geometric structures of neutral and cationic Si(n)Li(m)(0/+) clusters with n = 2-11 and m = 1, 2 are investigated using combined experimental and computational methods. The adiabatic ionization energy and vertical ionization energy (VIE) of Si(n)Li(m) clusters are determined using quantum chemical methods (B3LYP/6-311+G(d), G3B3, and CCSD(T)/aug-cc-pVxZ with x = D,T), whereas experimental values are derived from threshold photoionization experiments in the 4.68-6.24 eV range. Among the investigated cluster sizes, only Si(6)Li(2), Si(7)Li, Si(10)Li, and Si(11)Li have ionization thresholds below 6.24 eV and could be measured accurately. The ionization threshold and VIE obtained from the experimental photoionization efficiency curves agree well with the computed values. The growth mechanism of the lithium doped silicon clusters follows some simple rules: (1) neutral singly doped Si(n)Li clusters favor the Li atom addition on an edge or a face of the structure of the corresponding Si(n)(-) anion, while the cationic Si(n)Li(+) binds with one Si atom of the bare Si(n) cluster or adds on one of its edges, and (2) for doubly doped Si(n)Li(2)(0/+) clusters, the neutrals have the shape of the Si(n+1) counterparts with an additional Li atom added on an edge or a face of it, while the cations have both Li atoms added on edges or faces of the Si(n)(-) clusters.

Influence of Cr doping on the stability and structure of small cobalt oxide clusters

The stability of mass-selected pure cobalt oxide and chromium doped cobalt oxide cluster cations, ConO+m and Con-1CrO+m (n = 2, 3; m = 2-6 and n = 4; m = 3-8), has been investigated using photodissociation mass spectrometry. Oxygen-rich ConO+m clusters (m ≥ n + 1 for n = 2, 4 and m ≥ n + 2 for n = 3) prefer to photodissociate via the loss of an oxygen molecule, whereas oxygen poorer clusters favor the evaporation of oxygen atoms. Substituting a single Co atom by a single Cr atom alters the dissociation behavior. All investigated Con-1 CrO+m clusters, except CoCrO+2 and CoCrO+3, prefer to decay by eliminating a neutral oxygen molecule. Co2O+2, Co4O+3, Co4O+4, and CoCrO+2 are found to be relatively difficult to dissociate and appear as fragmentation product of several larger clusters, suggesting that they are particularly stable. The geometric structures of pure and Cr doped cobalt oxide species are studied using density functional theory calculations. Dissociation energies for different evaporation channels are calculated and compared with the experimental observations. The influence of the dopant atom on the structure and the stability of the clusters is discussed.

A Systematic Investigation on CrCun Clusters with n = 9–16: Noble Gas and Tunable Magnetic Property

A systematic investigation on structure, dissociation behavior, chemical bonding, and magnetic property of Cr-doped Cun clusters (n = 9-16) is carried out using the mean of density functional theory calculations. It is found that CrCu12 is a crucial size, preferring an icosahedral Cu12 cage with the central Cr dopant. Smaller cluster sizes appear as on the way to form the CrCu12 icosahedron while larger ones are produced by attaching additional Cu atoms to the CrCu12 core. The presence of Cr dopant obviously enhances the stability of CrCun clusters in comparison to that of pure counterparts. Exceptionally stable CrCu12 has an 18-electron closed-shell electronic structure, mimicking a noble gas in the viewpoint of superatom concept. Analysis on cluster electronic structure shows that the interplay between 3d orbitals of Cr and 4s orbitals of Cu has a vital role on the magnetic properties of CrCun clusters.

Effects of Charge Transfer on the Adsorption of CO on Small Molybdenum-Doped Platinum Clusters

The interaction of carbon monoxide with platinum alloy nanoparticles is an important problem in the context of fuel cell catalysis. In this work, molybdenum-doped platinum clusters have been studied in the gas phase to obtain a better understanding of the fundamental nature of the Pt-CO interaction in the presence of a dopant atom. For this purpose, Ptn+ and MoPtn-1+ (n=3-7) clusters were studied by combined mass spectrometry and density functional theory calculations, making it possible to investigate the effects of molybdenum doping on the reactivity of platinum clusters with CO. In addition, IR photodissociation spectroscopy was used to measure the stretching frequency of CO molecules adsorbed on Ptn+ and MoPtn-1+ (n=3-14), allowing an investigation of dopant-induced charge redistribution within the clusters. This electronic charge transfer is correlated with the observed changes in reactivity.

Evaluation of the absolute affinity of neuraminidase inhibitor using steered molecular dynamics simulations

The absolute free energy difference of binding (ΔG) between neuraminidase and its inhibitor was evaluated using fast pulling of ligand (FPL) method over steered molecular dynamics (SMD) simulations. The metric was computed through linear interaction approximation. Binding nature was described by free energy differences of electrostatic and van der Waals (vdW) interactions. The finding indicates that vdW metric is dominant over electrostatics in binding process. The computed values are in good agreement with experimental data with a correlation coefficient of R=0.82 and error of σΔGexp=2.2kcal/mol. The results were observed using Amber99SB-ILDN force field in comparison with CHARMM27 and GROMOS96 43a1 force fields. Obtained results may stimulate the search for an Influenza therapy.

Stability and bonding of the multiply coordinated bimetallic boron cycles: B8M22−, B7NM2 and B6C2M2 with M = Sc and Ti

A theoretical investigation of the geometry, stability and aromaticity of boron clusters doped by two Sc and Ti atoms was carried out using DFT calculations. The Sc and Ti atoms form the bimetallic boron cycles not only with the eight-membered ring B82− but also with the isoelectronic species B7N and B6C2 rings yielding the planar B82−, B7N and B6C2 rings sandwiched to two transition metals. The N and C atoms prefer to form eight-membered hetero-rings via the classical 2e–2c bonding rather than occupy high coordination positions. Both C atoms avoid binding each other. The thermodynamic stability of all bimetallic boron cycles is induced by the stabilizing overlap between the bonding and anti-bonding MOs of a metallic dimer M2 with levels of an eight-membered ring. These stabilizing interactions also release two sets of delocalized σ and π MOs, which obey the (4N + 2) electron count. Such a double σ and π aromaticity feature is clearly supported by the magnetic ring current flows.

Au 19 M (M=Cr, Mn, and Fe) as magnetic copies of the golden pyramid

An investigation on structure, stability, and magnetic properties of singly doped Au19M (M=Cr, Mn, and Fe) clusters is carried out by means of density functional theory calculations. The studied clusters prefer forming magnetic versions of the unique tetrahedral Au20. Stable sextet Au19Cr is identified as the least reactive species and can be qualified as a magnetic superatom. Analysis on cluster electronic structures shows that the competition between localized and delocalized electronic states governs the stability and magnetic properties of Au19M clusters.

The Boron conundrum: the case of cationic clusters {\rm{B}}^{+}_{n} with n = 2–20

We investigate the molecular and electronic structure and thermochemical properties of the cationic boron clusters Bn + with n = 2–20, using both MO and DFT methods. Several functionals are used along with the MP2, G3, G3B3, G4, and CCSD(T)/CBS methods. The latter is the high accuracy reference. While the TPSS, TPSSh, PW91, PB86, and PBE functionals show results comparable to high-accuracy MO methods, both BLYP and B3LYP functionals are not accurate enough for three-dimensional (3D) structures. A negligible difference is observed between the B3LYP, MP2, and CCSD(T) geometries. A transition between 2D and 3D structures occurs for this series at the B16+–B19 + sizes. While smaller clusters Bn + with n ≤ 15 are planar or quasi-planar, a structural competition takes place in the intermediate sizes of B+16–19 . The B20 ? cation has a 3D tubular shape. The standard heats of formation are determined and used to evaluate the cluster stability. The average binding energy tends to increase with increasing size toward a limit. All closed-shell species Bn+ has an aromatic character, but an enhanced stability is found for B5 + and B13 + whose aromaticity and electron delocalization are analyzed using the LOL technique.