Nia A. White

Extracellular phenoloxidase and peroxidase enzyme production during interspecific fungal interactions

Extracellular phenoloxidase enzymes have been implicated in the offensive/defensive strategies employed by fungi during interactions. To determine whether these enzymes are involved during Basidiomycete confrontations, a number of pairings between two brown-rot Basidiomycetes (Serpula lacrymans and Coniophora puteana) and several Deuteromycetes (Trichoderma spp. and Scytalidium FY) were performed. Laccase production was observed in pure cultures of C. puteana and Scytalidium FY, and in the interactions involving these two species. Laccase was also detected in the interactions involving S. lacrymans and all three Trichoderma isolates, although not in the respective pure cultures. Tyrosinase release was observed most frequently in interactions involving T. harzianum SIWT 25, although all other species also released tyrosinase under certain conditions, and peroxidase release was detected during all interspecific interactions. One exception involved T. viride SIWT 110 as this fungus did not produce tyrosinase under the experimental parameters utilized, and peroxidase release was inhibited during self-pairings and pairings involving the two other Trichoderma isolates. Extracellular laccase and tyrosinase production was much less on a low nutrient medium, although peroxidase production was not affected as strongly.

Investigating the effects of anaerobic and aerobic post-treatment on quality and stability of organic fraction of municipal solid waste as soil amendment

The use of OFMSW for biogas and compost production is considered as a sustainable strategy in saving valuable landfill space while producing valuable product for soil application. This study examines the effects of anaerobic and aerobic post-treatment of OFMSW on the stability of anaerobic digestate and compost and soil quality using seed germination tests. Anaerobic digestion of OFMSW was carried out for fifteen days after which the residual anaerobic digestate was subjected to aerobic post-treatment for seventy days. Seed germination tests showed that fresh feedstock and digestates collected during anaerobic digestion and during the early stages of aerobic post-treatment were phytotoxic. However, phytotoxic effects were not observed in soils amended with the fully stabilised anaerobic digestate compost, ADC. It was also found that seed germination increases with dilution and incubation time, suggesting that lower soil application rates and longer lag periods between soil application of ADC and planting can reduce the amount of biodegradable organics in the ADC, thus enhancing the benefits of ADC as soil amendment.

Biomass recycling and the origin of phenotype in fungal mycelia

Fungi are one of the most important and widespread components of the biosphere, and are essential for the growth of over 90% of all vascular plants. Although they are a separate kingdom of life, we know relatively little about the origins of their ubiquitous existence. This reflects a wider ignorance arising from their status as indeterminate organisms epitomized by extreme phenotypic plasticity that is essential for survival in complex environments. Here we show that the fungal phenotype may have its origins in the defining characteristic of indeterminate organisms, namely their ability to recycle locally immobilized internal resources into a mobilized form capable of being directed to new internal sinks. We show that phenotype can be modelled as an emergent phenomenon resulting from the interplay between simple local processes governing uptake and remobilization of internal resources, and macroscopic processes associated with their transport. Observed complex growth forms are reproduced and the sensitive dependence of phenotype on environmental context may be understood in terms of nonlinearities associated with regulation of the recycling apparatus.

Molecular analysis of intraspecific variation between building and ‘wild’ isolates of Serpula lacrymans and their relatedness to S. himantioides

Relationships between Serpula lacrymans and S. himantioides isolates of ‘wild’ Himalayan woodland and building (European and Australian) origin were examined using RAPD-PCR and ITS rDNA sequence comparison. GelCompar analysis of the genetic fingerprints of eighteen isolates using four RAPD-primer combinations clearly distinguished S. lacrymans and S. himantioides. Little intraspecific variation was observed in S. lacrymans (including isolates of Himalayan woodland origin), relative to S. himantioides. Despite previously reported differences in growth rates and decay capabilities of ‘wild’ Himalayan woodland S. lacrymans isolates and those from buildings, RAPD fingerprints and ITS sequences indicated they were genetically similar. Interspecific ITS sequence polymorphisms were consistent with other studies and clearly demonstrated S. himantioides and S. lacrymans were distinct taxa. Evolutionary questions regarding the origins of S. lacrymans are discussed.

Modelling interactions in fungi

Indeterminate organisms have received comparatively little attention in theoretical ecology and still there is much to be understood about the origins and consequences of community structure. The fungi comprise an entire kingdom of life and epitomize the indeterminate growth form. While interactions play a significant role in shaping the community structure of indeterminate organisms, to date most of our knowledge relating to fungi comes from observing interaction outcomes between two species in two-dimensional arena experiments. Interactions in the natural environment are more complex and further insight will benefit from a closer integration of theory and experiment. This requires a modelling framework capable of linking genotype and environment to community structure and function. Towards this, we present a theoretical model that replicates observed interaction outcomes between fungal colonies. The hypotheses underlying the model propose that interaction outcome is an emergent consequence of simple and highly localized processes governing rates of uptake and remobilization of resources, the metabolic cost of production of antagonistic compounds and non-localized transport of internal resources. The model may be used to study systems of many interacting colonies and so provides a platform upon which the links between individual-scale behaviour and community-scale function in complex environments can be built.

The impact of current research on the treatment of infestations by the dry rot fungus Serpula lacrymans

There have been a number of advances in the understanding of the physiology of the dry rot fungus, Serpula lacrymans, in the last decade. Specifically, studies on the natural origins of the fungus, morphogenesis, toxicant tolerance, environmental sensitivity, nitrogen metabolism, utilization of non-woody materials and biological control have all contributed to this understanding and each is discussed in relation to potential control strategies for the future. In addition, molecular studies involving detection, monitoring of speciation and the heat shock response of Serpula lacrymans have provided new insights into an organism which is uniquely destructive in the built environment.

Differential extracellular enzyme production in colonies of Coriolus versicolor, Phlebia radiata and Phlebia rufa: effect of gaseous regime

SUMMARY: The effects of different gaseous regimes on the growth rate and extracellular enzyme location in vitro of colonies of Phlebia radiata, Phlebia rufa and Coriolus versicolor are reported. The two Phlebia species showed similar growth, extracellular enzyme and pH responses to gaseous composition (N2, O2 and CO2), but the responses of C. versicolor differed. Whilst maximum extension rates were obtained for all species under atmospheric gaseous composition, maximum biomass production occurred at 5% (v/v) O2 with 20% (v/v) CO2 for the Phlebia species and at 5% O2 with 60% CO2 for C. versicolor. The Phlebia species had a coenocytic margin (5–6 mm width) under atmospheric conditions, which increased in width with increasing percentage of CO2. Laccase and peroxidase activity were present throughout the septate region, but not in the coenocytic zone. With C. versicolor laccase and peroxidase activities appeared throughout the colony, but were more intense in the peripheral region, under all gaseous regimes. A laser densitometer, normally used to visualize proteins on electrophoresis strips, was used to estimate profiles of biomass and laccase-α-naphthol activity within colonies. Surface pH changed little in colonies of C. versicolor but dropped by over 1 pH unit from the margin inwards with the Phlebia species. The significance of these results is discussed in terms of ecological strategy and developmental versatility.

Impact of basidiomycete fungi on the wettability of soil contaminated with a hydrophobic polycyclic aromatic hydrocarbon

Polyaromatic hydrocarbons (PAHs) present a challenge to bioremediation because they are hydrophobic, thus influencing the water availability and repellency of soil. The addition of different concentrations of the PAH, anthracene, showed it to induce moderate levels of repellency. We investigated the efficacy of three basidiomycete fungal species on improving the wettability of soil by reducing repellency caused by contamination of soil with 7 ppm anthracene. A microcosm system was used that enabled determination of the impact of fungi on wettability at three locations down a 30 mm deep repacked soil core. Before incubation with fungi, the contaminated soil had a repellency of R = 3.12 ± 0.08 (s.e.). After 28 days incubation, Coriolus versicolor caused a significant reduction in repellency to R = 1.79 ± 0.35 (P < 0.001) for the top section of the soil in a microcosm. Phanerochaete chrysosporium and Phlebia radiata did not influence repellency. None of the fungi had an effect at 20 mm depth.

Isolation and environmental study of ‘wild’ Serpula lacrymans and Serpula himantioides from the Himalayan forests

We report the first successful culturing and confirmation of identity (via sodium dodecyl sulphate polyacrylamide gel electrophoresis, SDS–PAGE) of Serpula lacrymans (the dry rot fungus) derived from basidiomes and mycelia growing in the ‘wild’. The fungus was found growing on well decayed coniferous wood within the Narkanda region of the Western Himalayas at between 2800 and 3100 m above sea level (a.s.l.). The ‘wild’ habitat of the fungus is described, as is the isolation of Serpula himantioides also found in these regions. Temperature, osmotic potential, initial pH and air-current influenced the average colony extension rate of ‘wild’ and a selection of building isolates on 2% malt extract agar. The ‘wild’ and building isolates behaved as two separate cohorts; the ‘wild’ isolates appeared to be less affected by extremes of temperature, whereas building isolates extended more rapidly at the moderate microenvironmental regimes.

Evidence for emergent behaviour in the community-scale dynamics of a fungal microcosm

A stochastic cellular automaton for modelling the dynamics of a two–species fungal microcosm is presented. The state of each cell in the automaton depends on the state of a predefined neighbourhood via a set of conditional probabilities derived from experiments conducted on pairwise combinations of species. The model is tested by detailed comparison with larger–scale experimental microcosms. By employing different hypotheses which relate the pairwise data to the conditional probabilities in the model, the nature of the local and non–local interactions in the community is explored. The hypothesis that the large–scale dynamics are a consequence of independent interactions between species in a local neighbourhood can be excluded at the 5percnt; significance level. The form of the interdependencies is determined and it is shown that the outcome of the interactions at the local neighbourhood–scale depends on the community–scale patterning of individuals. The dynamics of the microcosm are therefore an emergent property of the system of interacting mycelia that cannot be deduced from a study of the components in isolation.