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Featured researches published by Nic McCaffrey.


Plant Disease | 2016

First Report of Orchid fleck virus in Lilyturf (Liriope spicata) in Australia

Yongyu Mei; Nicolás Bejerman; Kathy S. Crew; Nic McCaffrey; Ralf G. Dietzgen

Liriope spicata (Asparagaceae) is an evergreen ornamental plant commonly referred to as lilyturf, creeping liriope, monkey grass, or creeping lilyturf, and is widely grown as groundcover and for erosion control (Fantz 2008). In April 2015, lilyturf plants with bright yellow flecks on the leaves were observed in landscape plantings across the St. Lucia campus of the University of Queensland, Brisbane, Australia. These symptoms were reminiscent of those observed on leaves of orchid species infected by Orchid fleck virus (OFV) (Kubo et al. 2009). Symptomatic leaf samples were collected and analyzed in a JEM-1400 transmission electron microscope (JEOL Ltd., Tokyo, Japan). Leaf dips were prepared by breaking up symptomatic tissue in 1% ammonium molybdate, pH 7.0 negative stain and extracts were placed on nitrocellulose-coated copper grids. Digital micrographs were captured with an Orius digital camera (Gatan Inc., Pleasanton, CA). Typical nonenveloped, rhabdovirus-like, bacilliform particles measuring ∼45 × 95 nm were observed, similar to those of OFV from infected orchids (Kondo et al. 2006). Total RNA was extracted from symptomatic tissue using an RNeasy Plant Mini Kit (Qiagen) and subjected to RT-PCR using the Superscript III One Step RT-PCR System with Platinum Taq DNA Polymerase (Thermo Fisher) and OFV nucleoprotein (N) gene primers polydT/SP6 (5′-GATTTAGGTGACACTATAGTTTTTTTTTTTTTTTTT(A/G/C)-3′) and mN2 (5′-TGCAGGAATATAGCCGACATGTT-3′) (Blanchfield et al. 2001). Agarose gel electrophoresis showed a single amplicon of ∼800 bp, comparable to the OFV positive control. DNA from both the lilyturf (DAF Plant Virus Collection Accession No. 5216) and a cymbidium OFV control (Accession No. 703) amplicons were gel-purified and cloned into pGEM-T Easy vector (Promega, Madison, WI) and sequenced using dideoxynucleotide sequencing at the Australian Genome Research Facility (Brisbane, Australia). A GenBank BLASTx search of the lilyturf virus N gene sequence of 658 nt showed 100% match to the N protein sequence of an Australian OFV isolate (Genbank Accession No. AAK09392 and e-value 1e-143). The partial N gene nucleotide sequence of the lilyturf OFV isolate #5216 was 99% identical to the cymbidium OFV isolate. Both sequences have been deposited in GenBank with Accession Nos. KT947974 and KT947975, respectively. Based on the observed symptoms, particle morphology, N gene amplicon using OFV primers, and high sequence identity with other OFV sequences, we conclude that the lilyturf plants were infected with OFV. This is the first report of OFV infecting L. spicata. This alternative host may play a possible role in OFV spread to orchids or other ornamental species that are colonized by its Brevipalpus sp. mite vector.


The AusIMM Bulletin | 2014

Mined land rehabilitation - is there a gap between regulatory guidance and successful relinquishment?

V. Glenn; David Doley; Corinne Unger; Nic McCaffrey; P. McKenna; Melina Gillespie; Elizabeth Williams


Archive | 2016

Mine rehabilitation: leading practice sustainable development program for the mining industry

Carl Grant; Rob Loch; Nic McCaffrey; Stuart Anstee; David Doley


Applied Vegetation Science | 2016

Ecoregionalization classification of wetlands based on a cluster analysis of environmental data

Alex M. Lechner; Nic McCaffrey; P. McKenna; W. N. Venables; John T. Hunter


Ecological Management and Restoration | 2014

Novel stratified-meander technique improves survey effort of the rare Pagoda Rock Daisy growing remotely on rocky cliff edges.

Nic McCaffrey; R. Blick; V. Glenn; Andrew Fletcher; Peter D. Erskine; John van Osta


Ecological Management and Restoration | 2013

Monitoring Epacris muelleri on unreachable cliffs in the Western Blue Mountains, Australia

R. Blick; Andrew Fletcher; Peter D. Erskine; Nic McCaffrey; V. Glenn


Kanunnah | 2012

A contribution to the flora of the Meredith Range, north-west Tasmania

S. J. Jarman; Nic McCaffrey


Archive | 2018

Using pilot tests to improve the monitoring of ecological impacts of subsidence from underground coal mining

Nic McCaffrey; V. Glenn; C.V. Johns; Alex M. Lechner; Peter D. Erskine


Indigenotes | 2017

Whatever happened to BioSites

Nic McCaffrey; Graeme Lorimer


Biodiversity Across the Borders Conference 2017 | 2017

Development of a monitoring program to detect changes in a vulnerable shrub in the Western Blue Mountains, NSW

Nic McCaffrey; John van Osta; V. Glenn

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V. Glenn

University of Queensland

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P. McKenna

University of Queensland

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C.V. Johns

University of Queensland

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David Doley

University of Queensland

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R. Blick

University of Queensland

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A. J. Gravina

University of Queensland

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John van Osta

University of Queensland

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