Network


Latest external collaboration on country level. Dive into details by clicking on the dots.

Hotspot


Dive into the research topics where Nihal Simsek Ozek is active.

Publication


Featured researches published by Nihal Simsek Ozek.


Biochimica et Biophysica Acta | 2014

Structural and functional characterization of simvastatin-induced myotoxicity in different skeletal muscles.

Nihal Simsek Ozek; I. Burak Bal; Yildirim Sara; Rustu Onur; Feride Severcan

BACKGROUND Statins are the most commonly used drugs for the treatment of hypercholesterolemia. Their most frequent side effect is myotoxicity. To date, it remains unclear whether statins preferentially induce myotoxicity in fast- or in slow-twitch muscles. Therefore, we investigated these effects on fast- (extensor digitorum longus; EDL), slow- (soleus; SOL), and mixed-twitch muscles (diaphragm; DIA) in rats by comparing their contractile and molecular structural properties. METHODS Simvastatin-induced functional changes were determined by muscle contraction measurements, and drug-induced molecular changes were investigated using Fourier transform infrared (FTIR) and attenuated total reflectance (ATR) FTIR spectroscopy. RESULTS With simvastatin administration (30 days, 50mg/kg), a depression in the force-frequency curves in all muscles was observed, indicating the impairment of muscle contractility; however, the EDL and DIA muscles were affected more severely than the SOL muscle. Spectroscopic findings also showed a decrease in protein, glycogen, nucleic acid, lipid content and an increase in lipid order and lipid dynamics in the simvastatin-treated muscles. The lipid order and dynamics directly affect membrane thickness. Therefore, the kinetics and functions of membrane ion channels were also affected, contributing to the statin-induced impairment of muscle contractility. Furthermore, a reduction in α-helix and β-sheet and an increase in random coil, aggregated and antiparallel β-sheet were observed, indicating the protein denaturation. Spectral studies showed that the extent of molecular structural alterations in the muscles following simvastatin administration was in the order EDL>DIA>SOL. CONCLUSIONS Simvastatin-induced structural and functional alterations are more profound in the fast-twitch than in the slow-twitch muscles. GENERAL SIGNIFICANCE Myotoxic effects of simvastatin are primarily observed in the fast-twitch muscles.


Bioscience Reports | 2009

Low dose simvastatin induces compositional, structural and dynamic changes in rat skeletal extensor digitorum longus muscle tissue

Nihal Simsek Ozek; Yildirim Sara; Rustu Onur; Feride Severcan

Statins are commonly used drugs in the treatment of hypercholesterolaemia. There are many adverse effects of statins on skeletal muscle, but the underlying mechanisms remain unclear. In the present study, the effects of low dose (20 mg/kg) simvastatin, a lipophilic statin, on rat EDL muscle (extensor digitorum longus muscle) were investigated at the molecular level using FTIR (Fourier-transform infrared) spectroscopy. FTIR spectroscopy allows us rapid and sensitive determination of functional groups belonging to proteins, lipids, carbohydrates and nucleic acids simultaneously. The results revealed that simvastatin treatment induces a significant decrease in lipid, nucleic acid, protein and glycogen content. A significant increase in the lipid/protein and nucleic acid/protein ratios was also obtained with simvastatin treatment. Furthermore, an increase in lipid order and membrane fluidity was detected. A decrease in the bandwidth of the amide I band and shifting of the position of this band to higher frequency values in treated muscle indicates structural changes in proteins. Detailed secondary structure analysis of the amide I band revealed a significant increase in antiparallel and aggregated beta-sheet, random coil structure and a significant decrease in beta-sheet structure, which indicates protein denaturation.


Proceedings of SPIE | 2016

Monitoring of tryptophan as a biomarker for cancerous cells in Terahertz (THz) sensing

Hakan Altan; Nihal Simsek Ozek; Seher Gok; Ipek Ozyurt; Feride Severcan

Tryptophan is an extremely important amino acid for a variety of biological functions in living organisms. Changes in the concentration of this amino acid can point to identification of cancerous tissues or even confirm symptoms of depression in patients. Therefore it is extremely important to identify and quantify tryptophan concentrations in human blood as well as in in-vivo diagnostic studies. Here a reflection based terahertz pulsed spectroscopy system was used to study the interaction of THz pulses with cancerous cells to gauge the possibility of using L-tryptophan as a biomarker for THz sensing of diseases. Initial measurements were performed on human colon adenocarcinoma cells and human breast cancer cells cultivated on glass slides. The glass slides utilized in the growth process limited the measurements not only to reflection based geometries but also limited the analysis of the samples in the frequency domain due to the highly absorbing nature of glass in the THz region. The useful bandwidth was limited to frequencies below 0.6THz which prohibited us from investigating the effects of L-tryptophan in these samples. Even with the limited frequency range the measurements show that there are slight differences in the transmission of the THz pulse through different samples.


Biophysical Journal | 2013

Characterization of Sodium Butyrate Induced Differentiation in Colon Cancer Cells by Fourier Transform Infrared Spectroscopy and Microscopy

Nihal Simsek Ozek; Asli Sade; Sreeparna Banerjee; Feride Severcan

Colon cancer is a major cause of morbidity and mortality throughout the world.The pathogenesis of colon cancer with respect to loss of cellular differentiation has not been clearly understood. To understand this loss in colon cancer and to differentiate the cancer cells, sodium butyrate (NaB), one of the differentiation inducer, is commonly used. NaB is produced in the colonic lumen as a consequence of bacterial fermentation of complex carbohydrates and it alters colon cancer cell morphology and reduces the cell growth and motility. Although, the differentiation process of colon cancers, which are stimulated with NaB, has been resolved at genetic level, the underlying mechanisms regarding structural and functional alterations regulating the differentiation of colon cancer cells have not been well characterized. Therefore, in this study, it was aimed to explore the NaB-induced macromolecular structural and functional changes in differentiation of colon cancer cells by attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy and FTIR microspectroscopy. These changes were determined from the spectral analysis of control and NaB treated colon cancer cell spectra and their chemical maps. Based on the spectral differences, cluster analysis was applied to discriminate the groups. The spectral analysis indicated the differences in saturated and unsaturated lipids, protein and nucleic acid content between the control and NaB treated cancer cells. The variation in membrane fluidity and lipid order was also determined in the NaB treated cells. Moreover, the successful discrimination between control and treated cells was obtained. The results of this study not only shed light on better understanding the loss of differentiation mechanisms in colon cancers but also strongly support the power of ATR-FTIR spectroscopy and FTIR microscopy as novel, simple, reagent-free methods for the identification of differentiated cancer cells.


Analyst | 2010

Characterization of microRNA-125b expression in MCF7 breast cancer cells by ATR-FTIR spectroscopy

Nihal Simsek Ozek; Serkan Tuna; A. Elif Erson-Bensan; Feride Severcan


Analyst | 2010

Evaluation and discrimination of simvastatin-induced structural alterations in proteins of different rat tissues by FTIR spectroscopy and neural network analysis

Sebnem Garip; Engin Yapici; Nihal Simsek Ozek; Mete Severcan; Feride Severcan


Biophysical Journal | 2015

Fourier Transform Infrared Spectroscopy and Imaging in Cancer Diagnosis and Characterization

Feride Severcan; Nihal Simsek Ozek; Seher Gok


Biomedical spectroscopy and imaging | 2013

Progress in vibrational spectroscopy in diagnosis and screening

Feride Severcan; Parvez I. Haris; Ceren Aksoy; Nihal Simsek Ozek


Journal of Biomedical Optics | 2018

Diagnosis of malignant pleural mesothelioma from pleural fluid by Fourier transform-infrared spectroscopy coupled with chemometrics

Sherif Abbas; Nihal Simsek Ozek; Salih Emri; Deniz Koksal; Mete Severcan; Feride Severcan


Tobacco Prevention and Cessation | 2016

Differentiation of chronic and aggressive forms of periodontitis and of smokers and non-smokers by Fourier-transform infrared spectroscopy

Nihal Simsek Ozek; Iris Zelle; Diane E. Renaud; Pınar Gümüş; Nejat Nizam; Feride Severcan; Nurcan Buduneli; David A. Scott

Collaboration


Dive into the Nihal Simsek Ozek's collaboration.

Top Co-Authors

Avatar

Feride Severcan

Middle East Technical University

View shared research outputs
Top Co-Authors

Avatar

Mete Severcan

Middle East Technical University

View shared research outputs
Top Co-Authors

Avatar

Seher Gok

Middle East Technical University

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar

Sreeparna Banerjee

Middle East Technical University

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar

A. Elif Erson-Bensan

Middle East Technical University

View shared research outputs
Top Co-Authors

Avatar

Asli Sade

Middle East Technical University

View shared research outputs
Top Co-Authors

Avatar

Ceren Aksoy

Middle East Technical University

View shared research outputs
Top Co-Authors

Avatar
Researchain Logo
Decentralizing Knowledge