Nikolaos Zarokanellos

Factors governing the deep ventilation of the Red Sea

A variety of data based on hydrographic measurements, satellite observations, reanalysis databases, and meteorological observations are used to explore the interannual variability and factors governing the deep water formation in the northern Red Sea. Historical and recent hydrographic data consistently indicate that the ventilation of the near-bottom layer in the Red Sea is a robust feature of the thermohaline circulation. Dense water capable to reach the bottom layers of the Red Sea can be regularly produced mostly inside the Gulfs of Aqaba and Suez. Occasionally, during colder than usual winters, deep water formation may also take place over coastal areas in the northernmost end of the open Red Sea just outside the Gulfs of Aqaba and Suez. However, the origin as well as the amount of deep waters exhibit considerable interannual variability depending not only on atmospheric forcing but also on the water circulation over the northern Red Sea. Analysis of several recent winters shows that the strength of the cyclonic gyre prevailing in the northernmost part of the basin can effectively influence the sea surface temperature (SST) and intensify or moderate the winter surface cooling. Upwelling associated with periods of persistent gyre circulation lowers the SST over the northernmost part of the Red Sea and can produce colder than normal winter SST even without extreme heat loss by the sea surface. In addition, the occasional persistence of the cyclonic gyre feeds the surface layers of the northern Red Sea with nutrients, considerably increasing the phytoplankton biomass.

Influence of atmospheric circulation on turbulent air‐sea heat fluxes over the Mediterranean Sea during winter

[1] The influence of the winter atmospheric circulation on the turbulent variables of the air-sea boundary layer in the Mediterranean Sea is investigated. We examine the effects of several climatic indices and the corresponding large scale atmospheric patterns on the above variables by using a correlation analysis. The spatial characteristics and the behavior of the turbulent variables are also examined based on standard deviation and EOF analysis. Two main types of response to the index-specified atmospheric patterns have been identified: (1) A relatively uniform response of the entire basin associated with the influence of the East Atlantic pattern and (2) opposite responses in the western and eastern sub-basins linked mainly to the intrabasin SLP. The latter is a combined effect of the first four modes of atmospheric variability in the North Atlantic/Eurasia region, the North Atlantic Oscillation (NAO), the East Atlantic Pattern (EA), the Scandinavian Pattern (SCAND), and the East Atlantic-West Russia Pattern (EAWR). The two identified responses of the Mediterranean Sea to the atmospheric forcing are also in accordance with the primary modes of variability of the turbulent variables that result in the EOF analysis. All of the statistically independent indices (NAO, EA, SCAND, EAWR) have to be considered in order to fully account for the modulation of the turbulent variables in the Mediterranean Sea. As an example we refer to the mechanism through which, independent modes of atmospheric variability contributed to the Eastern Mediterranean Transient event between 1987 and 1995.

Physical and biological characteristics of the winter‐summer transition in the Central Red Sea

The Central Red Sea (CRS) lies between two distinct hydrographic and atmospheric regimes. In the southern Red Sea, seasonal monsoon reversal regulates the exchange of water between the Red Sea and the Indian Ocean. In the northern Red Sea intermediate and occasionally deep water are formed during winter to sustain the basins overturning circulation. Highly variable mesoscale eddies and the northward flowing eastern boundary current (EBC) determine the physical and biogeochemical characteristics of the CRS. Ship-based and glider observations in the CRS between March and June 2013 capture key features of the transition from winter to summer and depict the impact of the eddy activity on the EBC flow. Less saline and relatively warmer water of Indian Ocean origin reaches the CRS via the EBC. Initially, an anticyclonic eddy with diameter of 140km penetrating to 150m depth with maximum velocities up to 30-35 cm s−1 prevails in the CRS. This anticyclonic eddy appears to block or at least redirect the northward flow of the EBC. Dissipation of the eddy permits the near-coastal, northward flow of the EBC and gives place to a smaller cyclonic eddy with a diameter of about 50km penetrating to 200m depth. By the end of May, as the northerly winds become stronger and persistent throughout the basin, characteristic of the summer southwest monsoon wind regime, the EBC and its associated lower salinity water became less evident, replaced by the saltier surface water that characterizes the onset of the summer stratification in the CRS.

Physical mechanisms routing nutrients in the central Red Sea

Mesoscale eddies and boundary currents play a key role in the upper layer circulation of the Red Sea. This study assesses the physical and biochemical characteristics of an eastern boundary current (EBC) and recurrent eddies in the central Red Sea (CRS) using a combination of in situ and satellite observations. Hydrographic surveys in November 2013 (autumn) and in April 2014 (spring) in the CRS (22.15 − 24.1°N) included a total of 39 and 27 CTD stations, respectively. In addition, high-resolution hydrographic data were acquired in spring 2014 with a towed undulating vehicle (ScanFish). In situ measurements of salinity, temperature, chlorophyll fluorescence, colored dissolved organic matter (CDOM), and dissolved nitrate: phosphorous ratios reveal distinct water mass characteristics for the two periods. An EBC, observed in the upper 150 m of the water column during autumn, transported low-salinity and warm water from the south toward the CRS. Patches of the low-salinity water of southern origin tended to contain relatively high concentrations of chlorophyll and CDOM. The prominent dynamic feature observed in spring was a cyclonic/anticyclonic eddy pair. The cyclonic eddy was responsible for an upward nutrient flux into the euphotic zone. Higher chlorophyll and CDOM concentrations, and concomitant lower nitrate:phosphorous ratios indicate the influence of the EBC in the CRS at the end of the stratified summer period.

Motif signatures of transcribed enhancers

In mammalian cells, transcribed enhancers (TrEn) play important roles in the initiation of gene expression and maintenance of gene expression levels in spatiotemporal manner. One of the most challenging questions in biology today is how the genomic characteristics of enhancers relate to enhancer activities. This is particularly critical, as several recent studies have linked enhancer sequence motifs to specific functional roles. To date, only a limited number of enhancer sequence characteristics have been investigated, leaving space for exploring the enhancers genomic code in a more systematic way. To address this problem, we developed a novel computational method, TELS, aimed at identifying predictive cell type/tissue specific motif signatures. We used TELS to compile a comprehensive catalog of motif signatures for all known TrEn identified by the FANTOM5 consortium across 112 human primary cells and tissues. Our results confirm that distinct cell type/tissue specific motif signatures characterize TrEn. These signatures allow discriminating successfully a) TrEn from random controls, proxy of non-enhancer activity, and b) cell type/tissue specific TrEn from enhancers expressed and transcribed in different cell types/tissues. TELS codes and datasets are publicly available at http://www.cbrc.kaust.edu.sa/TELS.