Nils Volkenborn

Infaunal Hydraulic Ecosystem Engineers: Cast of Characters and Impacts

Biogenic forces alter sediment characteristics along several axes with important consequences for structure of benthic communities. The usual axes discussed are those of sediment stabilization versus resuspension and mobile versus temporally persistent organisms. A third axis of bioadvection is typically subsumed within the others. Here we argue that given the complex fluid dynamics resulting from the bidirectional forces that organisms exert on porewater, bioadvection needs to be examined separately. The probable major players in generation of bioadvection are described with impacts on transport both of materials and heat. Illustrations are given of the bidirectionality of bioadvection and the resultant changes in oxygenation either surficially or at depth, as well as of heat transport both laterally within the sediment and vertically.

Disturbance induced decoupling between host genetics and composition of the associated microbiome

BackgroundStudies of oyster microbiomes have revealed that a limited number of microbes, including pathogens, can dominate microbial communities in host tissues such as gills and gut. Much of the bacterial diversity however remains underexplored and unexplained, although environmental conditions and host genetics have been implicated. We used 454 next generation 16S rRNA amplicon sequencing of individually tagged PCR reactions to explore the diversity of bacterial communities in gill tissue of the invasive Pacific oyster Crassostrea gigas stemming from genetically differentiated beds under ambient outdoor conditions and after a multifaceted disturbance treatment imposing stress on the host.ResultsWhile the gill associated microbial communities in oysters were dominated by few abundant taxa (i.e. Sphingomonas, Mycoplasma) the distribution of rare bacterial groups correlated to relatedness between the hosts under ambient conditions. Exposing the host to disturbance broke apart this relationship by removing rare phylotypes thereby reducing overall microbial diversity. Shifts in the microbiome composition in response to stress did not result in a net increase in genera known to contain potentially pathogenic strains.ConclusionThe decrease in microbial diversity and the disassociation between population genetic structure of the hosts and their associated microbiome suggest that disturbance (i.e. stress) may play a significant role for the assembly of the natural microbiome. Such community shifts may in turn also feed back on the course of disease and the occurrence of mass mortality events in oyster populations.

Same pattern, different mechanism: Locking onto the role of key species in seafloor ecosystem process.

Seafloor biodiversity is a key mediator of ecosystem functioning, but its role is often excluded from global budgets or simplified to black boxes in models. New techniques allow quantification of the behavior of animals living below the sediment surface and assessment of the ecosystem consequences of complex interactions, yielding a better understanding of the role of seafloor animals in affecting key processes like primary productivity. Combining predictions based on natural history, behavior of key benthic species and environmental context allow assessment of differences in functioning and process, even when the measured ecosystem property in different systems is similar. Data from three sedimentary systems in New Zealand illustrate this. Analysis of the behaviors of the infaunal ecosystem engineers in each system revealed three very different mechanisms driving ecosystem function: density and excretion, sediment turnover and surface rugosity, and hydraulic activities and porewater bioadvection. Integrative metrics of ecosystem function in some cases differentiate among the systems (gross primary production) and in others do not (photosynthetic efficiency). Analyses based on behaviors and activities revealed important ecosystem functional differences and can dramatically improve our ability to model the impact of stressors on ecosystem and global processes.

Effects of bioadvection by Arenicola marina on microphytobenthos in permeable sediments

We used hyperspectral imaging to study short-term effects of bioturbation by lugworms (Arenicola marina) on the surficial biomass of microphytobenthos (MPB) in permeable marine sediments. Within days to weeks after the addition of a lugworm to a homogenized and recomposed sediment, the average surficial MPB biomass and its spatial heterogeneity were, respectively, 150-250% and 280% higher than in sediments without lugworms. The surficial sediment area impacted by a single medium-sized lugworm (~4 g wet weight) over this time-scale was at least 340 cm2. While sediment reworking was the primary cause of the increased spatial heterogeneity, experiments with lugworm-mimics together with modeling showed that bioadvective porewater transport from depth to the sediment surface, as induced by the lugworm ventilating its burrow, was the main cause of the increased surficial MPB biomass. Although direct measurements of nutrient fluxes are lacking, our present data show that enhanced advective supply of nutrients from deeper sediment layers induced by faunal ventilation is an important mechanism that fuels high primary productivity at the surface of permeable sediments even though these systems are generally characterized by low standing stocks of nutrients and organic material.

Sample pooling obscures diversity patterns in intertidal ciliate community composition and structure.

The aim of this study was to assess the effect of sample pooling on the portrayal of ciliate community structure and composition in intertidal sediment samples. Molecular ciliate community profiles were obtained from nine biological replicates distributed in three discrete sampling plots and from samples that were pooled prior to RNA extraction using terminal restriction fragment polymorphism (T-RFLP) analyses of SSU rRNA. Comparing the individual replicates of one sampling plot with each other, we found a differential variability among the individual biological replicates. T-RFLP profiles of pooled samples displayed a significantly different community composition compared with the cumulative individual biological replicate samples. We conclude that sample pooling obscures diversity patterns in ciliate and possibly also other microbial eukaryote studies. However, differences between pooled samples and replicates were less pronounced when community structure was analyzed. We found that the most abundant T-RFLP peaks were generally shared between biological replicates and pooled samples. Assuming that the most abundant taxa in an ecosystem under study are also the ones driving ecosystem processes, sample pooling may still be effective for the analyses of ecological key players.

Global Carbon Cycling on a Heterogeneous Seafloor

Diverse biological communities mediate the transformation, transport, and storage of elements fundamental to life on Earth, including carbon, nitrogen, and oxygen. However, global biogeochemical model outcomes can vary by orders of magnitude, compromising capacity to project realistic ecosystem responses to planetary changes, including ocean productivity and climate. Here, we compare global carbon turnover rates estimated using models grounded in biological versus geochemical theory and argue that the turnover estimates based on each perspective yield divergent outcomes. Importantly, empirical studies that include sedimentary biological activity vary less than those that ignore it. Improving the relevance of model projections and reducing uncertainty associated with the anticipated consequences of global change requires reconciliation of these perspectives, enabling better societal decisions on mitigation and adaptation.

Bioirrigation in Marine Sediments

Bioirrigation refers to the enhanced transport of solutes across the sediment-water interface induced by the activities of bottom-dwelling organisms. This chapter provides an overview of what bioirrigation is, how it is induced, and how it affects processes in marine sediments. After discussing some well documented effects of bioirrigation such as the enhanced cycling of organic matter, nutrients, metals and pollutants, this article also touches upon phenomena that were uncovered more recently and deserve further attention, including rapid redox oscillations, bioadvection, and biohydraulic sediment cracking. Last but not least, some of the key methods used to study bioirrigation are presented, with special emphasis on imaging techniques that allow measurements with high spatial and temporal resolution. The chapter includes a number of graphics and videos that illustrate the highly dynamic and heterogeneous nature of bioirrigated sediments.

The effects of thin mud deposits on the behaviour of a deposit-feeding tellinid bivalve: implications for ecosystem functioning

ABSTRACT A laboratory experiment was conducted, to examine how feeding, siphon activity and movement behaviours of a tellinid bivalve, Macomona liliana (Iredale, 1915), were affected by thin surface layers of mud (1–4 mm) and the incorporation of mud into surface (0–2 cm) sediment. Time-lapse photography and porewater pressure sensors were used to characterise changes in behaviour before and after mud addition. Mud addition modified the sediment matrix which had an immediate effect on M. liliana behaviour; significantly affecting the rates of feeding and the degree of porewater pressurisation during feeding events. Surface activity indicated maintenance and clearance of established burrow structures and increased ventilation. Ultimately, subtle modifications in behaviour and sediment hydraulic conductivity may have consequences for nutrient exchange and benthic-pelagic coupling. Our results emphasise the need to consider the impacts of low level stressors when they affect the behaviour of structurally important species.