Niokhor Bakhoum

Effect of distance and depth on microbial biomass and mineral nitrogen content under Acacia senegal (L.) Willd. trees

The relations between plants and soil biota involve positive and negative feedbacks between soil organisms, their chemical environment, and plants. Then, characterization of microbial community functioning is important to understand these relations. An experiment was conducted in a field system in the north of Senegal for two years (2005 and 2006) in order to investigate the effect of depth and distance from Acacia senegal tree stem on soil microbial biomass and inorganic-N content. Soils were sampled during dry season (April, T(0)) and wet season (August, T(1)) along transects (R(0), foot tree; R(/2,) approximately 0.50 m distance from the stem; and R, approximately 1 m distance from the stem) and at different layers: 0-25 cm, 25-50 cm and 50-75 cm of A. senegal trees rhizosphere. Total microbial biomass and inorganic-N content were negatively correlated to the distance from tree stem and the depth. The highest values of microbial biomass and mineral nitrogen were found at the foot tree (R(0)) and at 0-25 cm layer. Inorganic-N was mostly in nitrate form (NO(3)(-)) during the dry season. In contrast, during the wet season, inorganic-N was dominated by ammoniac form (NH(4)(+)). Soil total microbial biomass and inorganic-N (NH(4)(+)+NO(3)(-)) were negatively correlated. Our results suggest a positive influence of A. senegal rhizosphere on soil microbial biomass and inorganic-N content.

Changes in Land Use System and Environmental Factors Affect Arbuscular Mycorrhizal Fungal Density and Diversity, and Enzyme Activities in Rhizospheric Soils of Acacia senegal (L.) Willd.

The responses of the soil microbial community features associated to the legume tree Acacia senegal (L.) Willd. including both arbuscular mycorrhizal fungal (AMF) diversity and soil bacterial functions, were investigated under contrasting environmental conditions. Soil samples were collected during dry and rainy seasons in two contrasting rainfall sites of Senegal (Dahra and Goudiry, in arid and semiarid zone, resp.). Soils were taken from the rhizosphere of A. senegal both in plantation and natural stands in comparison to bulk soil. A multiple analysis revealed positive correlations between soil physicochemical properties, mycorrhizal potential and enzyme activities variables. The positive effects of A. senegal trees on soil mycorrhizal potential and enzyme activities indicates that in sahelian regions, AMF spore density and diversity as well as soil microbial functions can be influenced by land-use systems (plantation versus natural population of A. senegal) and environmental conditions such as moisture and soil nutrient contents. Our study underlines the importance of prior natural AMF screening for better combinations of A. senegal seedlings with AMF species to achieve optimum plant growth improvement, and for restoration and reforestation of degraded lands.

Genetic and Genomic Diversity Studies of Acacia Symbionts in Senegal Reveal New Species of Mesorhizobium with a Putative Geographical Pattern

Acacia senegal (L) Willd. and Acacia seyal Del. are highly nitrogen-fixing and moderately salt tolerant species. In this study we focused on the genetic and genomic diversity of Acacia mesorhizobia symbionts from diverse origins in Senegal and investigated possible correlations between the genetic diversity of the strains, their soil of origin, and their tolerance to salinity. We first performed a multi-locus sequence analysis on five markers gene fragments on a collection of 47 mesorhizobia strains of A. senegal and A. seyal from 8 localities. Most of the strains (60%) clustered with the M. plurifarium type strain ORS 1032T, while the others form four new clades (MSP1 to MSP4). We sequenced and assembled seven draft genomes: four in the M. plurifarium clade (ORS3356, ORS3365, STM8773 and ORS1032T), one in MSP1 (STM8789), MSP2 (ORS3359) and MSP3 (ORS3324). The average nucleotide identities between these genomes together with the MLSA analysis reveal three new species of Mesorhizobium. A great variability of salt tolerance was found among the strains with a lack of correlation between the genetic diversity of mesorhizobia, their salt tolerance and the soils samples characteristics. A putative geographical pattern of A. senegal symbionts between the dryland north part and the center of Senegal was found, reflecting adaptations to specific local conditions such as the water regime. However, the presence of salt does not seem to be an important structuring factor of Mesorhizobium species.

Phylogeny of Nodulation Genes and Symbiotic Diversity of "Acacia senegal" (L.) Willd. and "A. seyal" (Del.) "Mesorhizobium" Strains from Different Regions of Senegal

Acacia senegal and Acacia seyal are small, deciduous legume trees, most highly valued for nitrogen fixation and for the production of gum arabic, a commodity of international trade since ancient times. Symbiotic nitrogen fixation by legumes represents the main natural input of atmospheric N2 into ecosystems which may ultimately benefit all organisms. We analyzed the nod and nif symbiotic genes and symbiotic properties of root-nodulating bacteria isolated from A. senegal and A. seyal in Senegal. The symbiotic genes of rhizobial strains from the two Acacia species were closed to those of Mesorhizobium plurifarium and grouped separately in the phylogenetic trees. Phylogeny of rhizobial nitrogen fixation gene nifH was similar to those of nodulation genes (nodA and nodC). All A. senegal rhizobial strains showed identical nodA, nodC, and nifH gene sequences. By contrast, A. seyal rhizobial strains exhibited different symbiotic gene sequences. Efficiency tests demonstrated that inoculation of both Acacia species significantly affected nodulation, total dry weight, acetylene reduction activity (ARA), and specific acetylene reduction activity (SARA) of plants. However, these cross-inoculation tests did not show any specificity of Mesorhizobium strains toward a given Acacia host species in terms of infectivity and efficiency as stated by principal component analysis (PCA). This study demonstrates that large-scale inoculation of A. senegal and A. seyal in the framework of reafforestation programs requires a preliminary step of rhizobial strain selection for both Acacia species.

The rhizosphere of the halophytic grass Sporobolus robustus Kunth hosts rhizobium genospecies that are efficient on Prosopis juliflora (Sw.) DC and Vachellia seyal (Del.) seedlings

The aim of this study was to survey the abundance and genetic diversity of legume-nodulating rhizobia (LNR) in the rhizosphere of a salt-tolerant grass, Sporobolus robustus Kunth, in the dry and rainy seasons along a salinity gradient, and to test their effectiveness on Prosopis juliflora (SW.) DC and Vachellia seyal (Del.) P.J.H. Hurter seedlings. The results showed a significant decrease in LNR population density and diversity in response to salinity, particularly during the dry season. A phylogenetic analysis of the 16S-23S rRNA ITS region clustered the 232 rhizobium isolates into three genera and 12 distinct representative genotypes: Mesorhizobium (8 genotypes), Ensifer (2 genotypes) and Rhizobium (2 genotypes). Of these genotypes, 2 were only found in the dry season, 4 exclusively in the rainy season and 6 were found in both seasons. Isolates of the Mesorhizobium and Ensifer genera were more abundant than those of Rhizobium, with 55%, 44% and 1% of the total strains, respectively. The abundance of the Mesorhizobium isolates appeared to increase in the dry season, suggesting that they were more adapted to environmental aridity than Ensifer genospecies. Conversely, Ensifer genospecies were more tolerant of high salinity levels than the other genospecies. However, Ensifer genospeciesproved to be the most efficient strains on P. juliflora and V. seyal seedlings. We concluded that S. robustus hosts efficient rhizobium strains in its rhizosphere, suggesting its ability to act as a nurse plant to facilitate seedling recruitment of P. juliflora and V. seyal in saline soils.

Permanent draft genome sequence of Ensifer sp. strain LCM 4579, a salt-tolerant, nitrogen-fixing bacterium isolated from Senegalese soil

ABSTRACT The genus Ensifer (formerly Sinorhizobium) contains many species able to form nitrogen-fixing nodules on plants of the legume family. Here, we report the 6.1-Mb draft genome sequence of Ensifer sp. strain LCM 4579, with a G+C content of 62.4% and 5,613 candidate protein-encoding genes.

Growth and physiological responses of Sporobolus robustus kunth seedlings to salt stress

ABSTRACT Seedlings of S. robustus were exposed to increasing NaCl concentrations (0, 50, 100, 150, 200, 250, and 300 mM) for 50, 100, and 150 days, in greenhouse conditions. Total dry weight and salt tolerance index decreased gradually with increasing NaCl concentrations. The optimum growth of S. robustus (4.12 to 5.25 g · plant−1) was obtained between 0 and 150 mM at 150 days after salt stress. Foliar chlorophyll a and total chlorophyll contents increased with NaCl concentration at 50 days after treatment. There was no significant effect of salinity on chlorophyll a, b and total chlorophyll contents at 100 and 150 days after treatment. Higher Na contents were found in the shoots as compared to the roots. The Na content increased, while K decreased with increasing NaCl concentrations, suggesting competitive inhibition between absorptions of Na and K as a consequence, the K/Na ratios in shoots and roots decreased with increasing salinity. The proline contents in S. robustus were more pronounced at 300 mM (2.02 µmol/g), 250 mM (2.64 µmol/g), and 200 mM NaCl concentrations (2.98 µmol/g) for 50, 100, and 150 days, respectively, as compared to the treatment without added NaCl. Overall, S. robustus could be considered as salt tolerant on the basis of their performance in biomass production, accumulation of Na, similar foliar chlorophyll a, chlorophyll b and total chlorophyll contents, and accumulation of proline with increasing salinity. The potential ability of S. robustus to accumulate significant amounts of Na makes this halophyte promising as a desalinization tool of salted soils.