Oana C. Marina

Correlating light scattering with internal cellular structures.

The origins of side scattering from a fibroblast and cervical cell line were determined by comparing side-scatter images with images stained for lysosomes, nuclei, and mitochondria on a cell by cell basis. Lysosomes or nuclei are the most efficient type of scatterer depending on the cell type and incident light polarization. The relative scattering efficiencies of lysosomes and mitochondria were the same for both cell lines, while the scattering efficiencies of the nuclei differed. The percent of 90° scattering from the nucleus, mitochondria, and lysosomes as well as the group of other internal cellular objects was estimated. The nucleus was the largest contributor to side scatter in the cervical carcinoma cells. The contributions of lysosomes, mitochondria, the nucleus, and particles unstained by either Hoechst, LysoSensor or MitoTracker ranges from ∼20% to ∼30% in fibroblast cells. The contribution of lysosomes to side scatter was much stronger when the incident light was polarized perpendicular to the scattering plane than when the polarization of the side scatter laser was parallel to the scattering plane. This dependence on side scatter polarization indicates that lysosomes contain scattering structures that are much smaller than the wavelength of light used in the measurements (785 nm). In conclusion, mitochondria were not found to be either the most efficient scatterer or to have the largest contribution to scattering in either cell line, in contrast to previous reports. Rather lysosomes, nuclei and unknown particles all have significant contributions to 90° scattering and the contributions of some of these particles can be modulated by changing the polarization of the incident light.

Effects of acetic acid on light scattering from cells

Acetic acid has been used for decades as an aid for the detection of precancerous cervical lesions, and the use of acetic acid is being investigated in several other tissues. Nonetheless, the mechanism of acetowhitening is unclear. This work tests some of the hypotheses in the literature and measures changes in light scattering specific to the nucleus and the cytoplasm. Wide angle side scattering from both the nucleus and the cytoplasm increases with acetic application to tumorigenic cells, with the increase in nuclear scattering being greater. In one cell line, the changes in nuclear scattering are likely due to an increase in number or scattering efficiency of scattering centers smaller than the wavelength of excitation light. There are likely several cellular changes that cause acetowhitening and the cellular changes may differ with cell type. These results should lead to a better understanding of acetowhitening and potentially the development of adjunct techniques to improve the utility of acetic acid application. For the well-studied case of cervical tissue, acetowhitening has been shown to be sensitive, but not specific for oncogenic changes needing treatment.

Biostimulation and microbial community profiling reveal insights on RDX transformation in groundwater

Hexahydro‐1,3,5‐trinitro‐1,3,5‐triazine (RDX) is a high explosive released to the environment as a result of weapons manufacturing and testing worldwide. At Los Alamos National Laboratory, the Technical Area (TA) 16 260 Outfall discharged high‐explosives‐bearing water from a high‐explosives‐machining facility to Cañon de Valle during 1951 through 1996. These discharges served as a primary source of high‐explosives and inorganic‐element contamination in the area. Data indicate that springs, surface water, alluvial groundwater, and perched‐intermediate groundwater contain explosive compounds, including RDX (hexahydro‐1,3,5‐trinitro‐1,3,5‐triazine); HMX (octahydro‐1,3,5,7‐tetranitro‐1,3,5,7‐tetrazocine); and TNT (2,4,6‐trinitrotoluene). RDX has been detected in the regional aquifer in several wells, and a corrective measures evaluation is planned to identify remedial alternatives to protect the regional aquifer. Perched‐intermediate groundwater at Technical Area 16 is present at depths from 650 ft to 1200 ft bgs. In this study, we examined the microbial diversity in a monitoring well completed in perched‐intermediate groundwater contaminated by RDX, and examined the response of the microbial population to biostimulation under varying geochemical conditions. Results show that the groundwater microbiome was dominated by Actinobacteria and Proteobacteria. A total of 1,605 operational taxonomic units (OTUs) in 96 bacterial genera were identified. Rhodococcus was the most abundant genus (30.6%) and a total of 46 OTUs were annotated as Rhodococcus. One OTU comprising 25.2% of total sequences was closely related to a RDX ‐degrading strain R. erythropolis HS4. A less abundant OTU from the Pseudomonas family closely related to RDX‐degrading strain P. putida II‐B was also present. Biostimulation significantly enriched Proteobacteria but decreased/eliminated the population of Actinobacteria. Consistent with RDX degradation, the OTU closely related to the RDX‐degrading P. putida strain II‐B was specifically enriched in the RDX‐degrading samples. Analysis of the accumulation of RDX‐degradation products reveals that during active RDX degradation, there is a transient increase in the concentration of the degradation products MNX, DNX, TNX, and NDAB. The accumulation of these degradation products suggests that RDX is degraded via sequential reduction of the nitro functional groups followed by abiotic ring‐cleavage. The results suggest that strict anaerobic conditions are needed to stimulate RDX degradation under the TA‐16 site‐specific conditions.

Hemoglobin parameters from diffuse reflectance data

Abstract. Tissue vasculature is altered when cancer develops. Consequently, noninvasive methods of monitoring blood vessel size, density, and oxygenation would be valuable. Simple spectroscopy employing fiber optic probes to measure backscattering can potentially determine hemoglobin parameters. However, heterogeneity of blood distribution, the dependence of the tissue-volume-sampled on scattering and absorption, and the potential compression of tissue all hinder the accurate determination of hemoglobin parameters. We address each of these issues. A simple derivation of a correction factor for the absorption coefficient, μa, is presented. This correction factor depends not only on the vessel size, as others have shown, but also on the density of blood vessels. Monte Carlo simulations were used to determine the dependence of an effective pathlength of light through tissue which is parameterized as a ninth-order polynomial function of μa. The hemoglobin bands of backscattering spectra of cervical tissue are fit using these expressions to obtain effective blood vessel size and density, tissue hemoglobin concentration, and oxygenation. Hemoglobin concentration and vessel density were found to depend on the pressure applied during in vivo acquisition of the spectra. It is also shown that determined vessel size depends on the blood hemoglobin concentration used.

Acoustic lysis of vegetative bacterial cells: Method and device development

A critical problem of many pathogen detection assays is the availability of intracellular protein and deoxyribonucleic acid (DNA). Acoustic lysis of suspended vegetative bacterial cells in a microfluidic system offers several advantages over conventional lysis techniques. The intracellular proteins and DNA are released and available for detection. A novel acoustic lysing alternative technique to the existing lysing methods for sample preparation and lysis step is proposed. We report here an efficient lysis device that uses acoustic excitation for performing lysis of Gram-positive and Gram-negative vegetative cells and has a high yield in a short amount of time. We also verified the condition of released protein since one of the major uses of vegetative cells lysis is for protein expression studies. Fluorimetry and flow cytometry were used to assess the degree of damage induced on the cells by the actual lysis method. The acoustic device allows the delivery of proteins in a non-denatured form, without adding chemicals, particles or other substances (e.g. enzymes) that could complicate the process or the detection procedure. The lysis device operates at low power (50–400 mW) and short time (3 min) and has high efficiency in comparison to current lysis standards (>85% vs. 12–50%).

The contribution of specific organelles to side scatter

Knowledge of which cellular structures scatter light is needed to fully utilize the information available from light scattering measurements of cells and tissues. To determine how specific organelles contribute to light scattering, wide angle side scattering was imaged simultaneously with fluorescence from specific organelles for thousands of cells using flow cytometry. Images were obtained with different depth of field conditions and analyzed with different assumptions. Both sets of data demonstrated that mitochondria and lysosomes, contribute similarly to side scatter. The nucleus contributes as much or more light scatter than either the mitochondria or the lysosomes.

Determining Vascular Parameters from Light Transport Measurements

A simple derivation of the effects of vessels is given which demonstrates a concentration dependence not been previously shown. Probe pressure effects on in vivo vascular parameters of the uterine cervix are assessed.

The Correlation between Side Scattering and Internal Structures of Mammalian Cells with and without Acetic Acid Exposure

The contribution of different cell constituents to side scatter is determined for mammalian cells with and without 0.6% acetic acid. Contributions depend on the polarization of the incident light and on exposure to acetic acid.

In vivo Spectroscopy of Cervical Tissue

We have collected in vivo spectroscopy data of cervical lesions from two separate locations. The data are analyzed to determine spectroscopic and colposcopic accuracy as compared to the gold standard of pathology.

Ultrasonic spore lysis and the release of intracellular content in a microfluidic channel

Ultrasonic lysis of suspended spores in a microfluidic channel is a promising alternative to conventional spore disruption techniques that include bead beating as the spore lysis gold standard. Our overall research goal is to obtain an automated detection system with complete sample preparation and lysis steps in a microfluidic channel. Previously, much work in this area has focused on organism viability rather than the release of intracellular material. Our research focuses on quantifying the amount of intracellular content (e.g., DNA, proteins, etc.) that is released by acoustic lysis for detection by the sensor. Elucidating the efficacy of acoustics on the release of intracellular material requires reliable methods to quantify the released intracellular content (nucleic acids and proteins). The device used for lysing spores consists of a microfluidic chamber with one acoustically active wall. The chamber depths are in the range of 100–200 m. Channels tested in the 70‐kHz to 1‐MHz frequency range show t...