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Dive into the research topics where Oliver Bieri is active.

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Featured researches published by Oliver Bieri.


Magnetic Resonance in Medicine | 2005

Analysis and compensation of eddy currents in balanced SSFP.

Oliver Bieri; Michael Markl; Klaus Scheffler

Balanced steady‐state free precession (SSFP) completely compensates for all gradients within each repetition time (TR), and is thus very sensitive to any magnetic field imperfection that disturbs the perfectly balanced acquisition scheme. It is demonstrated that balanced SSFP is especially sensitive to changing eddy currents that are induced by stepwise changing phase‐encoding (PE) gradients. In contrast to the linear k‐space trajectory, which has small variations between consecutive encoding steps, other encoding schemes (e.g., centric, random, or segmented orderings) exhibit significant jumps in k‐space between adjacent PE steps, and consequently induce rapidly changing eddy currents. The resulting disturbances induce significant image artifacts, such that compensation strategies are essential when nonlinear PE schemes are applied. Although direct annihilation of the induced eddy currents by additional, opposing magnetic fields has been investigated, it is limited by uncertainty regarding the time evolution of induced eddy currents. A generic (and thus system‐unrelated) compensation strategy is proposed that consists of “pairing” of consecutive PE steps. Another approach is based on partial dephasing along the slice direction that annihilates eddy‐current‐induced signal oscillations. Both pairing of the PE steps and “through‐slice equilibration” are easy to implement and allow the use of arbitrary k‐space trajectories for balanced SSFP. Magn Reson Med 54:129–137, 2005.


Magnetic Resonance in Medicine | 2008

Quantitative magnetization transfer imaging using balanced SSFP

Monika Gloor; Klaus Scheffler; Oliver Bieri

It is generally accepted that signal formation in balanced steady‐state free precession (bSSFP) is a simple function of relaxation times and flip angle only. This can be confirmed for fluids, but for more complex substances, magnetization transfer (MT) can lead to a considerable loss of steady‐state signal. Thus, especially in tissues, the analytical description of bSSFP requires a revision to fully take observed effects into account. In the first part of this work, an extended bSSFP signal equation is derived based on a binary spin‐bath model. Based on this new model of bSSFP signal formation, quantitative MT parameters such as the fractional pool size, corresponding magnetization exchange rates, and relaxation times can be explored. In the second part of this work, model parameters are derived in normal appearing human brain. Factors that may influence the quality of the model, such as B1 field inhomogeneities or off‐resonances, are discussed. Overall, good correspondence between parameters derived from two‐pool bSSFP and common quantitative MT models is observed. Short repetition times in combination with high signal‐to‐noise ratios make bSSFP an ideal candidate for the acquisition of high resolution isotropic quantitative MT maps, as for the human brain, within clinically feasible acquisition times. Magn Reson Med 60:691–700, 2008.


Magnetic Resonance in Medicine | 2006

On the origin of apparent low tissue signals in balanced SSFP

Oliver Bieri; Klaus Scheffler

Balanced steady‐state free precession (bSSFP) has become increasingly important in clinical applications. Its signal properties have been investigated over several years by many groups, and various critical factors for bSSFP signal intensity and stability, such as off‐resonances, flow, and eddy currents, have been identified. It is generally accepted that bSSFP signal intensity is a function of relaxation times, excitation angles, and spin densities only. While this is true for simple phantoms, it appears that signals from tissues are significantly less intense than predicted by theory. This work demonstrates that the molecular origin of this apparent signal reduction is due to on‐resonance magnetization transfer (MT). High flip angles in combination with very short repetition times (TRs), as commonly used for bSSFP, lead to a considerable saturation in the fraction of macromolecular (MM) pool protons. As a result, bSSFP signal is strongly attenuated by up to a factor of 2 in the human brain compared to the signal expected from theory. Magn Reson Med, 2006.


Radiology | 2010

23Na MR Imaging at 7 T after Knee Matrix―associated Autologous Chondrocyte Transplantation: Preliminary Results

Siegfried Trattnig; Gh Welsch; Juras; Pavol Szomolanyi; Marius E. Mayerhoefer; David Stelzeneder; Tallal C. Mamisch; Oliver Bieri; Klaus Scheffler; S Zbýn

PURPOSE To evaluate the feasibility of sodium 7-T magnetic resonance (MR) imaging in repaired tissue and native cartilage of patients after matrix-associated autologous chondrocyte transplantation (MACT) and compare results with delayed gadolinium-enhanced MR imaging of cartilage (dGEMRIC) at 3 T. MATERIALS AND METHODS Ethical approval was provided by the local ethics committee; written informed consent was obtained from all patients. Six women and six men (mean age, 32.8 year ± 8.2 [standard deviation] and 32.3 years ± 12.7, respectively) were included. Mean time between MACT and MR was 56 months ± 28. A variable three-dimensional (3D) gradient-echo (GRE) dual-flip-angle technique was used for T1 mapping before and after contrast agent administration at 3 T. All patients were also examined at 7 T (mean delay, 70.5 days ± 80.1). A sodium 23-only transmit-receive knee coil was used with the 3D GRE sequence. A statistical analysis of variance and Pearson correlation were applied. RESULTS Mean signal-to-noise ratio (SNR) was 24 in native cartilage and was 16 in transplants (P < .001). Mean sodium signal intensities normalized with the reference sample were 174 ± 53 and 267 ± 42 for repaired tissue in the cartilage transplant and healthy cartilage, respectively (P < .001). Mean postcontrast T1 values were 510 msec ± 195 and 756 msec ± 188 for repaired tissue and healthy cartilage, respectively (P = .005). Mean score of MR observation of cartilage repair tissue was 75 ± 14. Association between postcontrast T1 and normalized sodium signal values showed a high Pearson correlation coefficient (R) of 0.706 (P = .001). A high correlation of R = 0.836 (P = .001) was found between ratios of normalized sodium values and ratios of T1 postcontrast values. CONCLUSION With the modified 3D GRE sequence at 7 T, a sufficiently high SNR in sodium images was achieved, allowing for differentiation of repaired tissue from native cartilage after MACT. A strong correlation was found between sodium imaging and dGEMRIC in patients after MACT.


Journal of Magnetic Resonance Imaging | 2008

Magnetization transfer contrast and T2 mapping in the evaluation of cartilage repair tissue with 3T MRI

Goetz H. Welsch; Siegfried Trattnig; Klaus Scheffler; Pavol Szomonanyi; Sebastian Quirbach; Stefan Marlovits; Stephan Domayer; Oliver Bieri; Tallal C. Mamisch

To use magnetization transfer (MT) imaging in the visualization of healthy articular cartilage and cartilage repair tissue after different cartilage repair procedures, and to assess global as well as zonal values and compare the results to T2‐relaxation.


Magnetic Resonance in Medicine | 2007

Optimized balanced steady‐state free precession magnetization transfer imaging

Oliver Bieri; Klaus Scheffler

Balanced steady‐state free precession (bSSFP) suffers from a considerable signal loss in tissues. This apparent signal reduction originates from magnetization transfer (MT) and may be reduced by an increase in repetition time or by a reduction in flip angle. In this work, MT effects in bSSFP are modulated by a modification of the bSSFP sequence scheme. Strong signal attenuations are achieved with short radio frequency (RF) pulses in combination with short repetition times, whereas near full, i.e., MT‐free, bSSFP signal is obtained by a considerable prolongation of the RF pulse duration. Similar to standard methods, the MT ratio (MTR) in bSSFP depends on several sequence parameters. Optimized bSSFP protocol settings are derived that can be applied to various tissues yielding maximal sensitivity to MT while minimizing contribution from other impurities, such as off‐resonances. Evaluation of MT in human brain using such optimized bSSFP protocols shows high correlation with MTR values from commonly used gradient echo (GRE) sequences. In summary, a novel method to generate MTR maps using bSSFP image acquisitions is presented and factors that optimize and influence this contrast are discussed. Magn Reson Med 58:511–518, 2007.


Journal of Magnetic Resonance Imaging | 2013

Fundamentals of balanced steady state free precession MRI

Oliver Bieri; Klaus Scheffler

Balanced steady state free precession (balanced SSFP) has become increasingly popular for research and clinical applications, offering a very high signal‐to‐noise ratio and a T2/T1‐weighted image contrast. This review article gives an overview on the basic principles of this fast imaging technique as well as possibilities for contrast modification. The first part focuses on the fundamental principles of balanced SSFP signal formation in the transient phase and in the steady state. In the second part, balanced SSFP imaging, contrast, and basic mechanisms for contrast modification are revisited and contemporary clinical applications are discussed. J. Magn. Reson. Imaging 2013;38:2–11.


Magnetic Resonance in Medicine | 2005

Flow compensation in balanced SSFP sequences

Oliver Bieri; Klaus Scheffler

In balanced steady‐state free precession (b‐SSFP) sequences, uncompensated first‐order moments of encoding gradients induce a nonconstant phase evolution for moving spins within the excitation train, resulting in signal loss and image artifacts. To restore these flow‐related phase perturbations, “pairing” of consecutive phase‐encoding (PE) steps is compared with a fully flow‐compensated sequence using compensating gradient waveforms along all three encoding directions. In volunteer studies, the quality of images acquired with the “pairing” technique was comparable to that of images obtained with the fully flow‐compensated technique, regardless of the selected view‐ordering scheme used for data acquisition. Nevertheless, the results of phantom experiments indicate that the pairing technique becomes ineffective at flow velocities exceeding roughly 0.5–1 m/s. Consequently, the additional scan time required to null the first gradient moments in a flow‐compensated b‐SSFP sequence makes the “pairing” technique preferable for applications in which slow to moderate flow velocities can be expected. Magn Reson Med, 2005.


The Lancet | 2016

Nasal chondrocyte-based engineered autologous cartilage tissue for repair of articular cartilage defects: an observational first-in-human trial

Marcus Mumme; Andrea Barbero; Sylvie Miot; Anke Wixmerten; Sandra Feliciano; Francine Wolf; Adelaide M. Asnaghi; Daniel Baumhoer; Oliver Bieri; Martin Kretzschmar; Geert Pagenstert; Martin Haug; Dirk J. Schaefer; Ivan Martin; Marcel Jakob

BACKGROUND Articular cartilage injuries have poor repair capacity, leading to progressive joint damage, and cannot be restored predictably by either conventional treatments or advanced therapies based on implantation of articular chondrocytes. Compared with articular chondrocytes, chondrocytes derived from the nasal septum have superior and more reproducible capacity to generate hyaline-like cartilage tissues, with the plasticity to adapt to a joint environment. We aimed to assess whether engineered autologous nasal chondrocyte-based cartilage grafts allow safe and functional restoration of knee cartilage defects. METHODS In a first-in-human trial, ten patients with symptomatic, post-traumatic, full-thickness cartilage lesions (2-6 cm2) on the femoral condyle or trochlea were treated at University Hospital Basel in Switzerland. Chondrocytes isolated from a 6 mm nasal septum biopsy specimen were expanded and cultured onto collagen membranes to engineer cartilage grafts (30 × 40 × 2 mm). The engineered tissues were implanted into the femoral defects via mini-arthrotomy and assessed up to 24 months after surgery. Primary outcomes were feasibility and safety of the procedure. Secondary outcomes included self-assessed clinical scores and MRI-based estimation of morphological and compositional quality of the repair tissue. This study is registered with ClinicalTrials.gov, number NCT01605201. The study is ongoing, with an approved extension to 25 patients. FINDINGS For every patient, it was feasible to manufacture cartilaginous grafts with nasal chondrocytes embedded in an extracellular matrix rich in glycosaminoglycan and type II collagen. Engineered tissues were stable through handling with forceps and could be secured in the injured joints. No adverse reactions were recorded and self-assessed clinical scores for pain, knee function, and quality of life were improved significantly from before surgery to 24 months after surgery. Radiological assessments indicated variable degrees of defect filling and development of repair tissue approaching the composition of native cartilage. INTERPRETATION Hyaline-like cartilage tissues, engineered from autologous nasal chondrocytes, can be used clinically for repair of articular cartilage defects in the knee. Future studies are warranted to assess efficacy in large controlled trials and to investigate an extension of indications to early degenerative states or to other joints. FUNDING Deutsche Arthrose-Hilfe.


Magnetic Resonance in Medicine | 2014

Triple echo steady‐state (TESS) relaxometry

Rahel Heule; Carl Ganter; Oliver Bieri

Rapid imaging techniques have attracted increased interest for relaxometry, but none are perfect: they are prone to static (B0) and transmit (B1) field heterogeneities, and commonly biased by T2/T1. The purpose of this study is the development of a rapid T1 and T2 relaxometry method that is completely (T2) or partly (T1) bias‐free.

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Siegfried Trattnig

Medical University of Vienna

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Grzegorz Bauman

German Cancer Research Center

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Dirk Fischer

Boston Children's Hospital

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