Olugbenga Oluwagbemi

Computational biology and bioinformatics in Nigeria.

Over the past few decades, major advances in the field of molecular biology, coupled with advances in genomic technologies, have led to an explosive growth in the biological data generated by the scientific community. The critical need to process and analyze such a deluge of data and turn it into useful knowledge has caused bioinformatics to gain prominence and importance. Bioinformatics is an interdisciplinary research area that applies techniques, methodologies, and tools in computer and information science to solve biological problems. In Nigeria, bioinformatics has recently played a vital role in the advancement of biological sciences. As a developing country, the importance of bioinformatics is rapidly gaining acceptance, and bioinformatics groups comprised of biologists, computer scientists, and computer engineers are being constituted at Nigerian universities and research institutes. In this article, we present an overview of bioinformatics education and research in Nigeria. We also discuss professional societies and academic and research institutions that play central roles in advancing the discipline in Nigeria. Finally, we propose strategies that can bolster bioinformatics education and support from policy makers in Nigeria, with potential positive implications for other developing countries.

Soft Skills: An Important Asset Acquired from Organizing Regional Student Group Activities

Contributing to a student organization, such as the International Society for Computational Biology Student Council (ISCB-SC) and its Regional Student Group (RSG) program, takes time and energy. Both are scarce commodities, especially when you are trying to find your place in the world of computational biology as a graduate student. It comes as no surprise that organizing ISCB-SC-related activities sometimes interferes with day-to-day research and shakes up your priority list. However, we unanimously agree that the rewards, both in the short as well as the long term, make the time spent on these extracurricular activities more than worth it. In this article, we will explain what makes this so worthwhile: soft skills.

MACBenAbim: A Multi-platform Mobile Application for searching keyterms in Computational Biology and Bioinformatics

Computational biology and bioinformatics are gradually gaining grounds in Africa and other developing nations of the world. However, in these countries, some of the challenges of computational biology and bioinformatics education are inadequate infrastructures, and lack of readily-available complementary and motivational tools to support learning as well as research. This has lowered the morale of many promising undergraduates, postgraduates and researchers from aspiring to undertake future study in these fields. In this paper, we developed and described MACBenAbim (Multi-platform Mobile Application for Computational Biology and Bioinformatics), a flexible user-friendly tool to search for, define and describe the meanings of keyterms in computational biology and bioinformatics, thus expanding the frontiers of knowledge of the users. This tool also has the capability of achieving visualization of results on a mobile multi-platform context. Availability MACBenAbim is available from the authors for non-commercial purposes.

Paving the way towards a successful and fulfilling career in computational biology.

Most of us will spend a significant amount of time and effort throughout our lives in improving our career. The decisions we make shape how our career progresses, and the right decisions can ensure it is successful and fulfilling. Early decisions can have a strong influence, especially in todays competitive job market, where a university degree will not guarantee the best job. It is vital these early decisions are well informed and based on access to as much information as possible. As part of an effort to ensure that computational biologists and students are guided into the right career paths, the Regional Student Group (RSG) program, an arm of the International Society for Computational Biology (ISCB), has provided a range of activities to assist computational biologists and bioinformatics researchers in their career development. These include organizing practical workshops and seminars presented by leading experts on how to broaden the scope of career options and guarantee success. This article provides insight on some of these activities and highlights the benefits gained through the shared experiences of RSGs in running career-related activities.

An Analysis of Scripting Languages for Research in Applied Computing

There are several scripting languages that exist today. However, some are used more frequently and popular than others. This is due to certain characteristics and features that they possess. Particularly in applied computing fields like software engineering, bioinformatics and computational biology, scripting languages are gaining popularity. This paper presents a comparative study of ten popular scripting languages that are used in the above mentioned fields/area. For making comparison, we have identified the factors against which these languages are evaluated. Accordingly, based on selected criteria we determine their suitability in the fields of software engineering, bioinformatics and computational biology research. This will serve as a guide to researchers to choose the appropriate scripting language in the various fields.