P. J. Pinedo

Dynamics of culling risk with disposal codes reported by Dairy Herd Improvement dairy herds.

The objective was to describe the dynamics of culling risk with disposal codes for Holstein dairy cows reported by herds enrolled in the Dairy Herd Improvement program. Dairy producers could report 1 of 9 possible disposal codes or forego reporting a code. After edits, 3,629,002 lactation records were available for cows calving between 2001 and 2006 in 2,054 herds located in 38 states primarily east of the Mississippi river. The distribution of culled cows by disposal code was estimated by parity, days after calving, pregnancy status, cow-relative 305-d mature equivalent milk yield, herd-relative 305-d mature equivalent milk yield, and season. Of all herds, 57% reported all 8 different disposal codes excluding the codes dairy purposes and reason not reported. Hazard (risk) functions were calculated by parity, from 1 to 520 d since calving for open cows and from 1 to 280 d since conception for pregnant cows. Annualized live culling rate and death rate (reported code was death) were 25.1 and 6.6%, respectively. The primary disposal code was died (20.6% of all culling), followed by reproduction (17.7%), injury/other (14.3%), and low production and mastitis (both 12.1%). The risk of culling with various disposal codes varied with stage of lactation. Died and reproduction were the most frequently reported codes for cows leaving the herd during early and late lactation, respectively. Early lactation was also a critical period for culling with the disposal codes injury/other and disease, and the risk increased with days after calving for the codes low production and reproduction. The risk of culling with the disposal code died showed the greatest seasonal pattern with increased risk of death in spring and summer. A negative association was found between annualized live culling and death rates within herds. Compared with open cows, pregnant cows had a lower risk of culling with all reported disposal codes. In addition, the risk of culling was lower in high-producing cows with all disposal codes. In conclusion, the risk for culling by disposal code varied by parity, stage of lactation, season, pregnancy status, and milk yield.

Association between CARD15/NOD2 gene polymorphisms and paratuberculosis infection in cattle

Paratuberculosis represents a major problem in farmed ruminants and at the present is considered a potential zoonosis. The disease is caused by Mycobacterium avium subsp. paratuberculosis, and susceptibility to infection is suspected to have a genetic component. Caspase recruitment domain 15 (CARD15) gene encodes for a cytosolic protein implicated in bacterial recognition during innate immunity. Crohns disease (CD) is an idiopathic inflammatory bowel disease in humans comparable in many features to bovine paratuberculosis involving an abnormal mucosal immune response. The association between mutations in the CARD15 gene and increased risk of Crohns disease has been described. The objective of this candidate gene case-control study was to characterize the distribution of three polymorphisms in the bovine CARD15 gene and test their association with paratuberculosis infection in cattle. Three previously reported single nucleotide polymorphisms (E2[-32] intron 1; 2197/C733R and 3020/Q1007L) were screened for the study population (431 adult cows). The statistical analysis resulted in significant differences in allelic frequencies between cases and controls for SNP2197/C733R (P<0.001), indicating a significant association between infection and variant allele. In the analysis of genotypes, a significant association was also found between SNP2197/C733R and infection status (P<0.0001); cows with the heterozygous genotype were 3.35 times more likely to be infected than cows with the reference genotype (P=0.01). Results suggest a role for CARD15 gene in the susceptibility of cattle to paratuberculosis infection. These data contribute to the understanding of paratuberculosis, suggest new similarities with Crohns disease and provide new information for the control of bovine paratuberculosis.

Candidate gene polymorphisms (BoIFNG, TLR4, SLC11A1) as risk factors for paratuberculosis infection in cattle

Paratuberculosis (Johnes disease) imposes a significant problem to the world dairy and beef industries and today is considered a potential zoonosis. The disease is caused by Mycobacterium avium subsp. paratuberculosis and is characterized by progressive weight loss and profuse diarrhoea. Susceptibility to infection is suspected to have a genetic component, and moderated values for heritability of infection have been reported. Interferon gamma is an inducible cytokine with a crucial role in the innate host response to intracellular bacteria. Toll-like receptors are trans-membrane structures responsible for coordination of innate and adaptive immune responses. The solute carrier family 11 member 1 (SLC11A1, formerly NRAMP1) gene plays an important role in innate immunity, preventing bacterial growth in macrophages during the initial stages of infection. The objective of this candidate gene case-control study was to characterize the distribution of polymorphisms in three candidate genes related to the immune function; interferon gamma (BoIFNG), toll-like receptor 4 (TLR4), and SLC11A1 genes and to test their role as potential risk factors for paratuberculosis infection in cattle. The statistical analysis demonstrated significant differences in allelic frequencies between cases and controls for BoIFNG-SNP(1)2781 and SLC11A1 microsatellites, indicating a significant association between infection and variant alleles. In the analysis of genotypes, a significant association was also found between infection status and BoIFNG-SNP(1)2781 and SLC11A1-275-279-281 microsatellites. However, when variables such as breed and age were included in the multivariate logistic regression analysis, a tendency toward statistical significance for the effect of polymorphisms in the odds of infection was only found for alleles SLC11A1-275 and 279.

Reproductive risk factors for culling and productive life in large dairy herds in the eastern United States between 2001 and 2006

Knowledge of reproductive risk factors for culling is useful in making insemination and culling decisions and helps motivate efforts to reduce or eliminate risk factors. The objective of this study was to describe survival and reproductive risk factors for culling in Holstein dairy herds with at least 200 cows. Results were calculated from 2,345,015 DHI lactation records from 727 herds with at least 200 cows from 2001 to 2006. Herds were located in 36 states primarily located east of the Mississippi River. Kaplan-Meier survival curves were obtained and daily hazards of culling were calculated with the actuarial method. Cox regression was performed with the GLIMMIX procedure in SAS (SAS Institute Inc., Cary, NC). The hazard of culling increased with parity number. Cows in their sixth parity had 3 times greater hazards than cows in their first parity. Medium remaining productive life for cows calving in parity 1 to 6 were 907, 697, 553, 469, 423, and 399 d, respectively. Daily hazards of culling first peaked approximately 30 d after calving and then again later in lactation, after 280 d, for older cows. Hazards for first-parity cows peaked earlier, around d 10 after calving, and the first-parity cows had lower risks of culling later in lactation than older cows. Pregnant cows had 3 to 7 times lower hazards of culling than open cows. Hazards of culling increased for cows that had greater calving difficulty, gave birth to males or twins, were in herds with shorter days to first insemination, or had longer days to conception. The possible to likely use of a synchronized breeding program increased from 21.9% in 2001 to 41.4% in 2006. Cows in herds that did not use a synchronized breeding program had slightly lower risks of culling than those in herds that at least possibly used a synchronized breeding program.

Association among results of serum ELISA, faecal culture and nested PCR on milk, blood and faeces for the detection of paratuberculosis in dairy cows.

Paratuberculosis is a chronic, infectious disease of ruminants that entails a serious concern for the cattle industry. One of the main issues relates to the efficiency of diagnosis of subclinically infected animals. The objective of this field study was to analyse the association among results of a serum enzyme-linked immunosorbent assays (ELISA), faecal culture and nested PCR tests on milk, blood and faeces for Mycobacterium avium subsp. paratuberculosis detection in dairy cows. Faeces, blood and milk samples were collected from 328 lactating dairy cows in four known infected herds. Results were analysed to determine associations and levels of agreement between pairs of tests. A total of 61 animals (18.6%) tested positive when all the tests were interpreted in parallel. The agreement between results in different pairs of tests was poor, slight and fair in two, five and three of the 10 possible combinations respectively. Faecal culture and faecal polymerase chain reaction (PCR) resulted in the highest kappa coefficient (0.39; fair agreement), with the lowest agreement being for ELISA and blood PCR (-0.036; poor agreement). Fishers exact test resulted in statistically significant associations (P < or = 0.05) between the following test pairs: ELISA : faecal culture; ELISA : faecal PCR; milk PCR : faecal PCR, blood PCR : faecal PCR and faecal culture : faecal PCR. Enzyme-linked immunosorbent assays showed the highest complementary sensitivity values for all the possible two-test combinations, followed by faecal PCR. The combined use of ELISA and faecal PCR has the potential to increase the overall sensitivity for the diagnosis of paratuberculosis infection.

Effect of high somatic cell counts on reproductive performance of Chilean dairy cattle

The objectives were to evaluate the effect of high linear somatic cell counts (LNSCC > or =4.5) during early lactation on reproductive performance and to estimate their association with the risk of abortion in a population of central-southern Chilean dairy cattle. The analysis included records from a population of 157 farms and considered 1,127,405 test-day records including 101,944 lactations that began between 1997 and 2006. After data edits, the analyses of calving to first service and calving to conception intervals consisted of 88,633 and 70,877 lactations, respectively. Once controlling for significant variables, time to first breeding was 21.8 d longer in cows with at least 1 high LNSCC before the first breeding compared with controls. Cows with at least 1 high LNSCC before the fertile breeding had an increment in time to conception of 48.7 d and required, on average, 0.49 more services to conceive. The odds of conception at first service in cows with a high LNSCC within 30 d before [after] breeding were 0.85 (0.81 to 0.89; 95% confidence interval ) [0.82 (0.78 to 0.87; 95% confidence interval)] times the odds of conception for cows without a high LNSCC during that period. The Cox proportional hazard model indicated that after correction by calving year, lactation number, and milk yield standardized to 305 d, the risk of pregnancy decreased by 44% if a high LNSCC occurred before breeding. Cows registering a high LNSCC during the first 90 d of gestation had an increased risk of abortion, being 1.22 (1.07 to 1.35; 95% confidence interval) times more likely to abort than nonaffected cows. It is concluded that subclinical mastitis, measured as LNSCC >/=4.5, had a significant effect on reproductive performance in Chilean dairy cattle.

A retrospective study on the association between different lengths of the dry period and subclinical mastitis, milk yield, reproductive performance, and culling in Chilean dairy cows

The objective of this study was to determine the association between different dry period lengths and somatic cell counts, milk yield, reproductive performance, and risk of early culling during the subsequent lactation of Chilean dairy cows. The length of the dry period was classified into 5 categories: 0 to 30 d, 31 to 52 d, 53 to 76 d, 77 to 142 d, and 143 to 250 d. Generalized mixed models were used and included herd as random effect. Time-to-event analyses were performed for evaluation of reproductive performance and culling risk. The odds of subclinical mastitis (log linear score, LNSCC≥4.5) during early lactation increased with extended dry periods (143 to 250 d) during first, second, and third test day compared with the reference dry period of 53 to 76 d [odds ratio (OR)=1.27, 1.16, and 1.31, respectively]. Short (0 to 30 d) and extended dry periods had a detrimental effect on early lactation and 305-d milk yield compared with the reference dry period. Longer dry periods were associated with increased number of days for calving-to-first service interval and calving to conception interval. Average calving-to-first service interval for short and extended dry period were 83 d and 89.4 d, respectively. Average days to conception were 127.8 d and 131.4 d for a dry period of 31 to 52 d and extended dry period, respectively. Similarly, the number of services per conception increased with length of previous dry period from 1.62 (31 to 52 d) to 2.44 (143 to 250 d). Cows with previous short and extended dry period had higher odds of culling when compared with cows in the reference group (OR=2.20 and 1.57, respectively). Compared with the reference group, cows in the dry period category 77 to 142 d had the highest odds of death followed by the category 143 to 250 d (OR=1.27 and 1.18, respectively).When death and live culling were combined, the highest odds of combined death and culling were for cows in the categories 0 to 30 d and 143 to 250 d (OR=1.63 and 1.44, respectively). We conclude that extended dry periods (143 to 250 d) increase the odds of subclinical mastitis occurrence during early lactation and have a negative association with reproductive performance. Short and extended dry periods were negatively associated with early lactation and 305-d milk yield and were related to increased overall culling when compared with the reference dry period.

Innate immune gene variation and differential susceptibility to uterine diseases in Holstein cows

An immune response is mounted after binding of Toll-like receptors (TLRs) to pathogen-associated molecular patterns. The primary objective of this study was to test for the associations between bovine single-nucleotide polymorphisms (SNPs) and insertion-deletion (indel) mutations occurring in seven bovine TLR genes (TLRs 1, 2, 4, 5, 6, 9, and 10) that are known to recognize bacterial ligands and the most significant uterine diseases in dairy cows, including metritis (MET), clinical endometritis (CE), and cytologic endometritis (CYE). Custom allele-specific genotyping assays derived from multiple bovine TLR sequencing studies were utilized. Genotypes for 110 loci (SNPs and indels) that are known to be variable in domestic cattle were determined, resulting in 46 monomorphic loci, 64 loci with two alleles, and 35 loci that did not meet our inclusion criterion for minor allele frequency (≥0.10). The association between specific TLR genotypes and each of the uterine diseases (MET, CE, CYE) was evaluated by logistic regression with correction for confounding variables. Collectively, seven SNPs produced uncorrected P values ≤0.05 with respect to three different uterine diseases investigated, but none of the SNP associations endured correction for multiple testing (P values ≥ 0.05). Several confounding variables, including parity, dystocia, and ketosis before 17 DIM, remained significant after correction for multiple testing. Our analysis of these data suggest that some bovine TLR SNPs (i.e., TLRs 2, 4, 6, 9) may potentially elicit relatively small effects on uterine health in Holstein dairy cows and that some confounding variables are actually more predictive for the incidence of disease than any genetic markers evaluated herein.

Events occurring during the previous lactation, the dry period, and peripartum as risk factors for early lactation mastitis in cows receiving 2 different intramammary dry cow therapies

The objective of this study was to investigate the association between mastitis events occurring during the previous lactation, the dry period, and the peripartum period on the incidence of early lactation mastitis in cows receiving ceftiofur hydrochloride or penicillin dihydrostreptomycin as intramammary dry cow antibiotic therapy. Cows (n=402) from 2 large dairy farms in Central Florida were enrolled in the study at the time of dry-off processing and were randomly assigned to 1 of 2 dry cow therapies: ceftiofur hydrochloride or penicillin dihydrostreptomycin. Composite milk samples were collected at dry-off and after calving for bacteriological examination and somatic cell count. Peripartal health disorders were monitored during the first 30 d of lactation and included calving difficulty, metritis, ketosis, and left displaced abomasum. Milk production and individual somatic cell scores (SCS) were recorded monthly by the Dairy Herd Improvement Association. The main outcome variables were the risk of clinical mastitis during the first 30 and 60 d of lactation, and the risk of subclinical mastitis at the first 2 monthly Dairy Herd Improvement Association tests after calving (up to 70 d in milk). Additionally, the SCS and the presence of mastitis pathogens in milk at dry-off and at calving were analyzed. Explanatory variables consisted of events occurring during the previous lactation, at dry-off and during the dry period, at calving, and within the first 30 d after calving. Multiple events occurring during the previous lactation had a significant effect on the incidence of mastitis in the subsequent lactation. These events included low milk yield, intermediate lactation length, clinical mastitis, and lactation SCS average. Similarly, intramammary infections with environmental bacteria at dry-off increased the chances of clinical mastitis the first month after calving. Dry-off therapy had a significant effect on mastitis incidence; cows treated with ceftiofur hydrochloride had lower odds of having clinical and subclinical mastitis in the subsequent early lactation compared with cows treated with penicillin dihydrostreptomycin.

Effects of 35% corn wet distillers grains plus solubles in steam-flaked and dry-rolled corn-based finishing diets on animal performance, carcass characteristics, beef fatty acid composition, and sensory attributes

Fifty-four individually-fed Hereford-Angus cross steers (initial BW = 308 ± 9 kg) were used in an unbalanced randomized block design with a 2 × 2 factorial treatment arrangement to determine effects of corn processing method and corn wet distillers grains plus solubles (WDGS) inclusion in finishing diets on animal performance, carcass and beef characteristics, and sensory attributes. Dietary treatments included steam-flaked corn- (SFC) and dry-rolled corn (DRC)-based finishing diets containing 0 or 35% WDGS (DM basis; 0SFC and 35SFC, 0DRC and 35DRC, respectively). Yellow grease was used to equilibrate fat content of diets. Steers were fed 174 d, and were harvested on a single date when the mean ultrasound fat thickness was estimated to be 1.30 cm. No interactions between corn processing and WDGS were observed for performance or carcass characteristics (P ≥ 0.11). Final BW (556 ± 14 kg) and ADG (1.43 ± 0.06 kg) were not affected (P ≥ 0.25) by dietary treatment. Steers fed SFC-based diets consumed less feed, and were 10.6% more efficient (P < 0.01) than those fed DRC-based diets. Including WDGS in finishing diets improved feed efficiency of steers consuming both SFC- and DRC-based diets (P ≤ 0.04). Dietary treatment did not affect HCW, dressing percentage, fat thickness, or yield grade (P ≥ 0.27). Including WDGS in finishing diets decreased the concentration of 16:1cis-9, 18:1cis-9, and 18:1cis-11 fatty acids, and tended (P ≤ 0.10) to increase total fat concentration of steaks compared with diets without WDGS. A corn processing method by WDGS interaction was detected for 18:1trans-11 where steaks from 0DRC diets had decreased concentrations compared with other diets. There were no dietary effects on palatability attributes (P > 0.20). Livery-organy aromatics (P = 0.03) and sweet basic tastes (P = 0.01) in steaks from the 35SFC treatment were more intense than in other treatments, but were barely detectable. Thiobarbituric acid reactive substances tended to be greater in steaks from steers fed WDGS after 5 d of storage (P = 0.10), and were greater after 7 d. (P < 0.01). Inclusion of WDGS used in this experiment improved G:F with minimal impacts on carcass characteristics. Both WDGS inclusion and corn processing method impacted fatty acid composition. However, diet had minimal impacts on palatability attributes. When compared with diets fat-equilibrated with yellow grease, the primary concern with incorporating WDGS appears to be decreased shelf-life after 5 d of storage.