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Dive into the research topics where P. Ziherl is active.

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Featured researches published by P. Ziherl.


EPL | 2007

Soft spheres make more mesophases

Matthew A. Glaser; Gregory M. Grason; Randall D. Kamien; Andrej Kosmrlj; Christian D. Santangelo; P. Ziherl

We use both mean-field methods and numerical simulation to study the phase diagram of classical particles interacting with a hard-core and repulsive, soft shoulder. Despite the purely repulsive interaction, this system displays a remarkable array of aggregate phases arising from the competition between the hard-core and shoulder length scales. In the limit of large shoulder width to core size, we argue that this phase diagram has a number of universal features, and classify the set of repulsive shoulders that lead to aggregation at high density. Surprisingly, the phase sequence and aggregate size adjusts so as to keep almost constant inter-aggregate separation.


Nature | 2014

Mosaic two-lengthscale quasicrystals

Tomonari Dotera; T. Oshiro; P. Ziherl

Over the past decade, quasicrystalline order has been observed in many soft-matter systems: in dendritic micelles, in star and tetrablock terpolymer melts and in diblock copolymer and surfactant micelles. The formation of quasicrystals from such a broad range of ‘soft’ macromolecular micelles suggests that they assemble by a generic mechanism rather than being dependent on the specific chemistry of each system. Indeed, micellar softness has been postulated and shown to lead to quasicrystalline order. Here we theoretically explore this link by studying two-dimensional hard disks decorated with step-like square-shoulder repulsion that mimics, for example, the soft alkyl shell around the aromatic core in dendritic micelles. We find a family of quasicrystals with 10-, 12-, 18- and 24-fold bond orientational order which originate from mosaics of equilateral and isosceles triangles formed by particles arranged core-to-core and shoulder-to-shoulder. The pair interaction responsible for these phases highlights the role of local packing geometry in generating quasicrystallinity in soft matter, complementing the principles that lead to quasicrystal formation in hard tetrahedra. Based on simple interparticle potentials, quasicrystalline mosaics may well find use in diverse applications ranging from improved image reproduction to advanced photonic materials.


Physical Review Letters | 2007

Observation of condensed phases of quasiplanar core-softened colloids.

Natan Osterman; Dušan Babič; Igor Poberaj; Jure Dobnikar; P. Ziherl

We experimentally study the condensed phases of repelling core-softened spheres in two dimensions. The dipolar pair repulsion between superparamagnetic spheres trapped in a thin cell is induced by a transverse magnetic field and softened by suitably adjusting the cell thickness. We scan a broad density range and we materialize a large part of the theoretically predicted phases in systems of core-softened particles, including expanded and close-packed hexagonal, square, chainlike, stripe or labyrinthine, and honeycomb phase. Further insight into their structure is provided by Monte Carlo simulations.


Liquid Crystals | 1999

Flexoelectro-optic effect in a hybrid nematic liquid crystal cell

S. Ponti; P. Ziherl; C. Ferrero; Slobodan Zumer

W e analyse the influence of charged impurities and flexoelectric polarization on the optical transmission of a hybrid aligned nematic liquid crystal cell. The theoretical results obtained within the framework of the Poisson-Boltzmann equation and Frank elastic theory are compared with the observed optical response [N. V. Madhusudana and G. Durand,J. Phys.Lett. 46, L-195 (1985)]. We show that impurities can be very important for the behaviour of the system in the low field regime where the flexoelectric effect is relevant, and we determine the flexoelectric coefficient, the anchoring strength, and the concentration of impurities in the sample previously studied by Madhusudana and Durand.


Nature Communications | 2015

Embryo-scale tissue mechanics during Drosophila gastrulation movements

Matteo Rauzi; Uros Krzic; Timothy E. Saunders; Matej Krajnc; P. Ziherl; Lars Hufnagel

Morphogenesis of an organism requires the development of its parts to be coordinated in time and space. While past studies concentrated on defined cell populations, a synthetic view of the coordination of these events in a whole organism is needed for a full understanding. Drosophila gastrulation begins with the embryo forming a ventral furrow, which is eventually internalized. It is not understood how the rest of the embryo participates in this process. Here we use multiview selective plane illumination microscopy coupled with infrared laser manipulation and mutant analysis to dissect embryo-scale cell interactions during early gastrulation. Lateral cells have a denser medial–apical actomyosin network and shift ventrally as a compact cohort, whereas dorsal cells become stretched. We show that the behaviour of these cells affects furrow internalization. A computational model predicts different mechanical properties associated with tissue behaviour: lateral cells are stiff, whereas dorsal cells are soft. Experimental analysis confirms these properties in vivo.


Biophysical Journal | 2013

Physical Models of Mesoderm Invagination in Drosophila Embryo

Matteo Rauzi; Ana Hočevar Brezavšček; P. Ziherl

The invagination of the mesoderm in the Drosophila melanogaster embryo is an intensely studied example of epithelial folding. Several theoretical studies have explored the conditions and mechanisms needed to reproduce the formation of the invagination in silico. Here we discuss the aspects of epithelial folding captured by these studies, and compare the questions addressed, the approaches used, and the answers provided.


Soft Matter | 2012

Three-dimensional analysis of lipid vesicle transformations

Ai Sakashita; Naohito Urakami; P. Ziherl; Masayuki Imai

We use fast confocal laser microscopy to quantitatively study axisymmetric and nonaxisymmetric shapes of lipid vesicles undergoing spontaneous transformations. To characterize the observed three-dimensional shapes, we compute their respective reduced monolayer area difference and reduced volume. The transformations allow us to analyze a broad range of vesicle shapes including stomatocytes, elliptocytes, discocytes, cigars, necklaces, and many nonaxisymmetric shapes. The transformations are marked by a step-like time dependence of the reduced monolayer area difference, which is explained in terms of the area-difference-elasticity model. The simplest mechanism consistent with the observed shape transformations are small folded multilamellar patches on either monolayer. The experimental methodology validated by the reported results can be used to monitor and analyze more complex vesicle shapes and their evolution.


Proceedings of the National Academy of Sciences of the United States of America | 2007

Flat and sigmoidally curved contact zones in vesicle–vesicle adhesion

P. Ziherl; Saša Svetina

Using the membrane-bending elasticity theory and a simple effective model of adhesion, we study the morphology of lipid vesicle doublets. In the weak adhesion regime, we find flat-contact axisymmetric doublets, whereas at large adhesion strengths, the vesicle aggregates are nonaxisymmetric and characterized by a sigmoidally curved, S-shaped contact zone with a single invagination and a complementary evagination on each vesicle. The sigmoid-contact doublets agree very well with the experimentally observed shapes of erythrocyte aggregates. Our results show that in identical vesicles with large to moderate surface-to-volume ratio, the sigmoid-contact shape is the only bound morphology. We also discuss the role of sigmoid contacts in the formation of multicellular aggregates such as erythrocyte rouleaux.


Applied Magnetic Resonance | 1999

Deuteron NMR relaxometry applied to confined liquid crystals

M. Vilfan; N. Vrbančič-Kopač; P. Ziherl; Gregory P. Crawford

We discuss the capability of deuteron nuclear magnetic resonance (NMR) spectroscopy and relaxometry to reveal molecular ordering and dynamics in confined liquid crystals. The attention is focused on the high-temperature phase above the nematic-isotropic transition, which is — in the absence of the long-range orientational order — very suitable for the study of surface interactions. Deuteron NMR spectra and relaxation rates are presented for two representatives of confined liquidcrystal systems: 8CB in cylindrical cavities of Anopore membranes and 5CB with an embedded polymer network. A substantial increase in the transverse spin relaxation rate, stimulated by the surface-induced order in enclosures, has been observed. In cylindrical cavities, it exhibits a strong temperature dependence on approaching the phase transition, whereas in the polymer network dispersion it is temperature-independent. The increase of T2−1 provides information on the effect of spatial constraints on molecular mobility and on the surface orientational order parameter. Using deuteron relaxometry, one can measure the degree of orientational order in the isotropic phase not only in cylindrical but also in spherical cavities and enclosures of irregular shape, where the standard approach based on quadrupolar splitting of the NMR spectrum fails.


Bioelectrochemistry | 2008

Morphology of small aggregates of red blood cells.

Saša Svetina; P. Ziherl

Blood can be considered a two-phase liquid composed of plasma as well as cells and cell aggregates. The degree of cell aggregation is an important determinant of blood rheology: The size and shape of the aggregates affect blood viscosity. The microscopic mechanisms of red blood cell adhesion involve a complex interplay of electrostatic, van der Waals, and a range of specific biochemical inter-membrane interactions. Here we use an effective model of these interactions combined with the membrane elasticity theory to calculate the equilibrium shape of a red blood cell doublet and compare it with the experimentally observed red blood cell aggregates both in vitro and in vivo. Special attention is devoted to the shape of doublets formed by dissimilar cells. A possible effect of doublet shape on pathways of the formation of multicellular aggregates is discussed. Red blood cell rouleau formation is expected to take place at intermediate adhesion strengths where the outer doublet surfaces are either concave or flat, whereas in the strong-adhesion regime where the outer doublet surfaces are convex the cells should form rounded clump-like aggregates.

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Matej Krajnc

University of Ljubljana

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M. Vilfan

University of Ljubljana

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Randall D. Kamien

University of Pennsylvania

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