Panayiotis A. Koutentis

Ligand - based virtual screening procedure for the prediction and the identification of novel β-amyloid aggregation inhibitors using Kohonen maps and Counterpropagation Artificial Neural Networks

In this work we have developed an in silico model to predict the inhibition of β-amyloid aggregation by small organic molecules. In particular we have explored the inhibitory activity of a series of 62 N-phenylanthranilic acids using Kohonen maps and Counterpropagation Artificial Neural Networks. The effects of various structural modifications on biological activity are investigated and novel structures are designed using the developed in silico model. More specifically a search for optimized pharmacophore patterns by insertions, substitutions, and ring fusions of pharmacophoric substituents of the main building block scaffolds is described. The detection of the domain of applicability defines compounds whose estimations can be accepted with confidence.

A novel simple QSAR model for the prediction of anti-HIV activity using multiple linear regression analysis

SummaryA quantitative–structure activity relationship was obtained by applying Multiple Linear Regression Analysis to a series of 80 1-[2-hydroxyethoxy-methyl]-6-(phenylthio) thymine (HEPT) derivatives with significant anti-HIV activity. For the selection of the best among 37 different descriptors, the Elimination Selection Stepwise Regression Method (ES-SWR) was utilized. The resulting QSAR model (R2CV = 0.8160; SPRESS = 0.5680) proved to be very accurate both in training and predictive stages.

Characterization and Magnetic Properties of a "Super Stable" Radical 1,3-Diphenyl-7-trifluoromethyl-1,4-dihydro-1,2,4-benzotriazin-4-yl

1,3-Diphenyl-7-trifluoromethyl-1,4-dihydro-1,2,4-benzotriazin-4-yl (4), prepared in high yield via the catalytic oxidation of the corresponding amidrazone 5 by using Pd/C (1.6 mol %) and 1,8-diazabicyclo[5.4.0]undec-7-ene (0.1 equiv) in air, is stable in dichloromethane solutions in the presence of MnO(2) and KMnO(4). Furthermore, radical 4 is thermally stable well past its melting point (160-161 °C) with a decomposition onset temperature of 288 °C. X-ray studies show that radical 4 packs in equidistant slipped π-stacks along the a axis. Cyclic voltammetry shows two fully reversible waves, corresponding to the -1/0, 0/+1 processes. EPR studies indicate that the spin density is mainly delocalized on the triazinyl fragment of the heterocycle. Magnetic susceptibility measurements in the 5-300 K region showed that the radical obeys Curie-Weiss behavior down to 10 K (C = 0.376 emu·K·mol(-1) and θ = +1.41 K) consistent with weak ferromagnetic interactions between S = 1/2 radicals. Subsequent fitting of the magnetic data to a 1D ferromagnetic chain model provided an excellent fit (g = 2.00, J/k = +1.49 K) down to 10 K but failed to reproduce the subsequent decrease in χT at lower temperatures, which has been ascribed to the onset of weaker antiferromagnetic interactions between ferromagnetic chains.

A combined LS-SVM & MLR QSAR workflow for predicting the inhibition of CXCR3 receptor by quinazolinone analogs

A novel QSAR workflow is constructed that combines MLR with LS-SVM classification techniques for the identification of quinazolinone analogs as “active” or “non-active” CXCR3 antagonists. The accuracy of the LS-SVM classification technique for the training set and test was 100% and 90%, respectively. For the “active” analogs a validated MLR QSAR model estimates accurately their I-IP10 IC50 inhibition values. The accuracy of the QSAR model (R2 = 0.80) is illustrated using various evaluation techniques, such as leave-one-out procedure

Predictive QSAR workflow for the in silico identification and screening of novel HDAC inhibitors

{(R^{2}_{\rm LOO} =0.67)}

In Silico Exploration for Identifying Structure–Activity Relationship of MEK Inhibition and Oral Bioavailability for Isothiazole Derivatives

and validation through an external test set

Synthesis of 7-aryl/heteraryl-1,3-diphenyl-1,2,4-benzotriazinyls via palladium catalyzed Stille and Suzuki-Miyaura reactions.

{(R^{2}_{\rm pred} =0.78)}