Pascal Bonnet

Practices associated with Highly Pathogenic Avian Influenza spread in traditional poultry marketing chains: Social and economic perspectives.

In developing countries, smallholder poultry production contributes to food security and poverty alleviation in rural areas. However, traditional poultry marketing chains have been threatened by the epidemics caused by the Highly Pathogenic Avian Influenza (H5N1) virus. The article presents a value chain analysis conducted on the traditional poultry marketing chain in the rural province of Phitsanulok, Thailand. The analysis is based on quantitative data collected on 470 backyard chicken farms, and on qualitative data collected on 28 poultry collectors, slaughterhouses and market retailers, using semi-structured interviews. The article examines the organization of poultry marketing chains in time and space, and shows how this may contribute to the spread of Highly Pathogenic Avian Influenza H5N1 in the small-scale poultry sector. The article also discusses the practices and strategies developed by value chain actors facing poultry mortality, with their economic and social determinants. More broadly, this study also illustrates how value chain analysis can contribute to a better understanding of the complex mechanisms associated with the spread of epidemics in rural communities.

Advocacy for identifying certain animal diseases as “neglected”

According to the World Health Organization (WHO), neglected tropical diseases (NTDs) affect almost 1,000,000,000 people in 149 countries (http://www.who.int/neglected_diseases/diseases/en/). Most are small family farmers living in the least-developed countries where health systems are often inadequate, and climate conditions are favourable to infectious and parasitic diseases. These diseases hinder socioeconomic development, maintain poverty, and impede the achievement of UN sustainable development goals (SDGs) [1]. Economic analyses have shown that their control, elimination, or eradication would lead to net economic benefits [2]. Rapid progress can be achieved when organised health systems, whether public, private, or mixed, are in place to provide diagnostic methods and facilities, treatments, and vaccines. Of the 18 diseases on WHOs list of NTDs, only 5 are zoonoses: Taenia solium cysticercosis, echinococcosis, leishmaniasis, rabies, and human African trypanosomiasis (HAT). Some authors consider this list incomplete and believe that at least 3 other major zoonoses—anthrax, bovine tuberculosis, and brucellosis—should be included [3]. Moreover, while some public–private partnerships—e.g., the Global Alliance for Livestock Veterinary Medicines, GALVmed (https://www.galvmed.org/)—now target major livestock diseases impacting smallholders by connecting academia, public research institutes, and the pharmaceutical sector, no strictly animal disease (i.e., nonzoonotic) has been labelled “neglected”. Nevertheless, animal diseases directly impact peoples livelihoods. Furthermore, due to the multiple functions fulfilled by livestock in rural societies—as sources of food, income, and social status—animal diseases ultimately also impact human health. (Resume dauteur)

The One Health Concept to Dovetail Health and Climate Change Policies

Health strategies and policies must be adapted in response to climate change within a broader context of global change involving increasing demand for animal products, globalization of their trade, and the impact of multiple environmental, socioeconomic and climatic determinants of human and animal health. In that setting, there is a greater risk that parasitic and infectious animal and zoonotic diseases will emerge, persist or spread, so livestock production and health sectors must become more resilient while reducing countries’ vulnerability to climate-sensitive diseases through adaptation measures. These will involve ranking diseases by severity and evaluating and then minimizing risks (surveillance, prevention and control) pursuant to ad hoc legislation based on the One Health concept.

Adaptability of small ruminant farming facing global change. A north south analysis in Mediterranea

The aim of this study was to investigate the role of coprophagous behavior in suckling rabbit on the implantation of caecal microbiota and to try improving the health status of rabbits modifying this behavior. Three groups were compared: in FM group (n=24 litters), pups had free access to maternal hard feces, in NF group (n=28), ingestion of hard feces was prevented, and in FF group (n=28), pups had access only to hard feces excreted by foreign females (n = 5, 7 and 9 feces from 2 to 13 d, 14 to 17 d, 18 to 20 d, respectively). Pup mortality, excretion and ingestion of feces were measured daily. Bacterial composition was assessed by 454 pyrosequencing of the V3-V4 region of 16S RNA genes at 14, 35, 49 and 80 d of age. The total number of feces excreted by the does from 2 to 20 d after delivery ranged widely, but was similar among groups (16.1 ± 12.6 feces doe-1). Ingestion of feces was 3 times greater in FF than in FM group (35.6 vs 9.9, p < 0.001). From 1 to 80 d of age the FF and NF groups exhibited respectively the lowest (9.3%) and highest (22.8%) pup mortality compared to FM group (15.5 %, p = 0.03). At age 14 d the caecal bacterial community was dominated by Bacteroidetes phyla (63.3%), Bacteroidaceae family (36.0%) and Bacteriodes genus (36.0%). With increasing age, Firmicutes phyla, Lachnospiraceae and Ruminococcaceae families became the dominant taxa (92.0%, 44.0 % and 37.9 %, respectively at 80 d of age). Impairment of feces ingestion delayed this ecological succession, with greater and lower relative abundance of Bacteroidaceae and Ruminococcaceae respectively in NF than the two other groups at age 35 d (p < 0.1). In conclusion, the coprophagous behaviour of suckling rabbits is implicated in the maturation of caecal bacterial microbiota and stimulation of this natural behavior improve the health status of animals and could be used to limit the use of antibiotics.Equitherapy is widely practiced and its positive effects are quite well known. However, dynamics of communication between the horse, the user and the therapist is little described. Here, we proposed a pilot study that focused on visual attention of these three partners at two moments: before and during horseback riding (HR). The triad had been observed during the equitherapy session (around 45 min) of four boys with autism (6-9 yo). Ten-second scan samplings recorded the gaze direction of each subject. Data were converted in percentage of time. Horses had mostly gazed at physical environment both before (76.2±6.6%) and during (91.6±1.6%) HR. Human they mostly gazed was the therapist before HR (8.7±3.3%). Similarly, boys mostly gazed at physical environment throughout the session (61.7±17.1% and 46.9±15.3%, respectively). Focus on social partner showed that boys mostly gazed at horse especially during HR (8.7±4.7% and 13.2±9.6% respectively). Likewise their visual attention to humans was enhanced during HR (9.0±1.5% to 19.3±3.1%). At last, before HR, therapists mostly gazed at boy (33.8±9.4%) and horse (38.4±16.7%). During HR, their attention on boy increased slightly (36.7±10.0%) but surprisingly, their attention on horse decreased extremely (7.2±0.9%) in favor of the physical environment (26.1±11.5% to 50.3±12.7%). This pilot study on visual attention during equitherapy suggested that children with autism, whose attentional skills are impaired, seemed to be more attentive to social partners during HR. In this situation, horses seemed few attentive to humans that might be explain by either apathy or working situation. Finally, the reduction of therapist’s visual attention to the horse during HR suggests a decrease in vigilance. This was an example of routine where human pays less attention to animal, which constituted one of the most accidental situations. Thus, therapists must be greatly attentive when horses are used in such therapeutic programs where safety is indispensable.Similar farrowing progress among sows housed in crates and pens Pedersen, Janni Hales; Moustsen, V. A.; Devreese, Anne Michéle; Hansen, Christian Fink Published in: European Association for Animal Production. Annual Meeting. Book of Abstracts DOI: 10.3920/978-90-8686-782-0 Publication date: 2013 Document Version Early version, also known as pre-print Citation for published version (APA): Pedersen, J. H., Moustsen, V. A., Devreese, A. M., & Hansen, C. F. (2013). Similar farrowing progress among sows housed in crates and pens. DOI: 10.3920/978-90-8686-782-0The EAAP AFWG was constituted in 2007 with a view t o enhancing the role of animal fibre in EU27, utilizing an approach based on science and technology. Although an unrecorded and neglected product, annual production of wool from 6 2m breeding sheep (Eurostat) alone is substantial at an estimated 186,000 tonnes (FAO). R ecent outputs include organised symposia and publications defining current knowledge. In rec ognising the need for better networks of scientists and technologists, a total of 5 applicat ions for financial support has been made to the EC COST Framework since 2010. Such applications , by initial pre-proposal, are assessed in 6 categories with a maximum score of 6 for each, giving a maximum score of 36. Preproposals scoring most highly, on average, are invi ted to submit a full proposal. Evaluation has been characterised by large variation in scores of individual assessors. For one example, scores of 36, 33, 32, 32, 28, 21,16 were awarded by 7 assessors, giving mean value = 28.3; SD = 7.23; CV%= 25.5. The divergence of the median v lue of 32 from the mean (28.3) shows a skewed distribution. Removal of the two low est outliers, gives a mean = 32.2; SD= 2.86; CV%= 8.9 and median = 32 and removes the skew . The use in ranking, of such a simple average of means, is clearly unreliable. Another ex ample, with a mean score of 31.25, gave rise to an invitation to submit a full proposal. Th is was done, involving 14 EU partner, and 4 international “reciprocal agreement”, countries. Th e outcome of this application was a score of 53, and below the cut-off score of 55, for furth er progression. The consensus conclusion of evaluation was that “the expected benefits are like ly to be non-European”. This conclusion is surprising and essentially without explanation. The selection of evaluators remains a concern. 64 th EAAP Annual meeting, 25-30 August, 2013, Nantes, France Symposium on South American Camelids and other Fibre AnimalsThe role of the agouti gene in white phenotype was explored in mice. The agouti signalling protein (ASP) can inhibit the differentiation of melanoblasts through the inhibition of the alfa-MSH-induced expression of microphtalmia (MITF) and its binding to a M box regulatory element. The level of microphtalmia in the cells is reduced. To investigate the role of agouti in this phenotype we characterised the transcript structures an relative mRNA expression levels in 13 white alpaca. The reverse transcription analysis of mRNA purified from skin biopsies revealed the presence of three transcripts with different 5’untranslated regions (UTRs) and color specific expression. One of the transcripts, possibly originating from a duplication event (intra-chromosomal recombination) of the agouti gene is characterised by a 5’UTR containing 142 bp of the NCPOA6 gene sequence. Furthermore, the raltive level expression analysis of mRNA demonstrates that the agouti gene has upregulated expression in white skin, suggesting a pleiotropic effect of agouti gene in the white phenotype. Resumen : Recombinacion cromosomica del gen agouti en alpacas blancas. Fue explorado en ratones el rol del gen agouti en el fenoripo blanco. La protein senalarizadora agouti (ASP) puede inibir la diferenciacion de los melanoblastos a traves de la inhibicion de la expresion alfa-MSH inducida de macroftalmia (MITF) y su union al elemento regulador Mbox. El nivel de macroftalmia en las celulas se reduce. Para investigar el rol del agouti en este fenotipo, caracterizamos las estructuras transcriptas a una relativa expresion del mRNA en 13 alpacas blancas blancas. El analisis de transcripcion reversa del mRNA purificado a partir de las biopsias de piel, revelaron la presencia de tres transciptos con diferentes regiones no traducidas del extremo 5’ (5’UTR) y expresiones de color especificas. Uno de los transcriptos, posiblemente procedente de un evento de duplicacion (recombinacion intra-cromosomico) del gen aguti se caracteriza por un 5’ UTR que contiene 142 pb del gen NCPOA6. Por otra parte, el analisis del nivel relativo de expresion del mRNA demuestra que el gen agouti tiene sobre expresion reguladora en piel blanca, lo que sugiere un efecto pleiotropico del gen agouti en el fenotipo blanco.The agouti gene encodes agouti signalling protein (ASIP) whic h regulates pheomelanin and eumelanin synthesis in mammals. To investigate the role of agouti in coat color variation of alpaca, we characterised the agouti gene on 27 black and 12 brown alpaca. The exon-4 hosts three loss-of-function recessive mutations: g.3836C >T, g.3896G>A and g.3866_3923del57, involved in eumelanin synthesis. The deletion at th e position p.C109-Rdel19 eliminates the two beta sheets and the R-F-F- motif from the agout i functional domain, which are essential against alfa-MSH. Therefore, the deleted allele app ears to lose function. The other ANPs observed at the amino acid position 98 and 118 chan ge the conserved R to C and the R-F-Fmotif into H-F-F-. The R-F-F- motif is important fo r functioning at MCRs; the disruption of this motif may result in a non functional agouti pr otein since the alteration of residues in and around R-F-F- causes a decrease in agouti protein i nhibition of alfa-MSH binding to MCRs during signal transduction. The three mutations are randomly distributed among the black alpaca. In our sample, we observed two genotypes : g.3836C>T/g.3896G>A (10 animals) and g.3836C>T/g.3866_3923del57 (17 animals). Among the brown alpaca, 2 are homozygous for the wild allele, 12 are heterozygous for g.3896G>A mutation, carriers for black phenotype.

Lutte contre les maladies tropicales endémiques. Déclarer " négligées " certaines maladies animales

Le qualificatif neglige accorde par lOrganisation mondiale de la sante (OMS) a certaines maladies tropicales endemiques, humaines et zoonotiques, touchant les populations pauvres a entraine une forte mobilisation dacteurs et de moyens, qui permet de mieux les controler. Dou la proposition que soient egalement declarees negligees des maladies animales ayant un fort impact social et economique sur les populations marginalisees des pays les moins avances. Une telle demarche suppose toutefois didentifier limpact economique et social, ainsi que des criteres et le seuil a partir duquel accorder cette reconnaissance.

Role of mobility to face long drought (1995-2011) in the Coastal Zone of Western Desert (Egypt)

The aim of this study was to investigate the role of coprophagous behavior in suckling rabbit on the implantation of caecal microbiota and to try improving the health status of rabbits modifying this behavior. Three groups were compared: in FM group (n=24 litters), pups had free access to maternal hard feces, in NF group (n=28), ingestion of hard feces was prevented, and in FF group (n=28), pups had access only to hard feces excreted by foreign females (n = 5, 7 and 9 feces from 2 to 13 d, 14 to 17 d, 18 to 20 d, respectively). Pup mortality, excretion and ingestion of feces were measured daily. Bacterial composition was assessed by 454 pyrosequencing of the V3-V4 region of 16S RNA genes at 14, 35, 49 and 80 d of age. The total number of feces excreted by the does from 2 to 20 d after delivery ranged widely, but was similar among groups (16.1 ± 12.6 feces doe-1). Ingestion of feces was 3 times greater in FF than in FM group (35.6 vs 9.9, p < 0.001). From 1 to 80 d of age the FF and NF groups exhibited respectively the lowest (9.3%) and highest (22.8%) pup mortality compared to FM group (15.5 %, p = 0.03). At age 14 d the caecal bacterial community was dominated by Bacteroidetes phyla (63.3%), Bacteroidaceae family (36.0%) and Bacteriodes genus (36.0%). With increasing age, Firmicutes phyla, Lachnospiraceae and Ruminococcaceae families became the dominant taxa (92.0%, 44.0 % and 37.9 %, respectively at 80 d of age). Impairment of feces ingestion delayed this ecological succession, with greater and lower relative abundance of Bacteroidaceae and Ruminococcaceae respectively in NF than the two other groups at age 35 d (p < 0.1). In conclusion, the coprophagous behaviour of suckling rabbits is implicated in the maturation of caecal bacterial microbiota and stimulation of this natural behavior improve the health status of animals and could be used to limit the use of antibiotics.Equitherapy is widely practiced and its positive effects are quite well known. However, dynamics of communication between the horse, the user and the therapist is little described. Here, we proposed a pilot study that focused on visual attention of these three partners at two moments: before and during horseback riding (HR). The triad had been observed during the equitherapy session (around 45 min) of four boys with autism (6-9 yo). Ten-second scan samplings recorded the gaze direction of each subject. Data were converted in percentage of time. Horses had mostly gazed at physical environment both before (76.2±6.6%) and during (91.6±1.6%) HR. Human they mostly gazed was the therapist before HR (8.7±3.3%). Similarly, boys mostly gazed at physical environment throughout the session (61.7±17.1% and 46.9±15.3%, respectively). Focus on social partner showed that boys mostly gazed at horse especially during HR (8.7±4.7% and 13.2±9.6% respectively). Likewise their visual attention to humans was enhanced during HR (9.0±1.5% to 19.3±3.1%). At last, before HR, therapists mostly gazed at boy (33.8±9.4%) and horse (38.4±16.7%). During HR, their attention on boy increased slightly (36.7±10.0%) but surprisingly, their attention on horse decreased extremely (7.2±0.9%) in favor of the physical environment (26.1±11.5% to 50.3±12.7%). This pilot study on visual attention during equitherapy suggested that children with autism, whose attentional skills are impaired, seemed to be more attentive to social partners during HR. In this situation, horses seemed few attentive to humans that might be explain by either apathy or working situation. Finally, the reduction of therapist’s visual attention to the horse during HR suggests a decrease in vigilance. This was an example of routine where human pays less attention to animal, which constituted one of the most accidental situations. Thus, therapists must be greatly attentive when horses are used in such therapeutic programs where safety is indispensable.Similar farrowing progress among sows housed in crates and pens Pedersen, Janni Hales; Moustsen, V. A.; Devreese, Anne Michéle; Hansen, Christian Fink Published in: European Association for Animal Production. Annual Meeting. Book of Abstracts DOI: 10.3920/978-90-8686-782-0 Publication date: 2013 Document Version Early version, also known as pre-print Citation for published version (APA): Pedersen, J. H., Moustsen, V. A., Devreese, A. M., & Hansen, C. F. (2013). Similar farrowing progress among sows housed in crates and pens. DOI: 10.3920/978-90-8686-782-0The EAAP AFWG was constituted in 2007 with a view t o enhancing the role of animal fibre in EU27, utilizing an approach based on science and technology. Although an unrecorded and neglected product, annual production of wool from 6 2m breeding sheep (Eurostat) alone is substantial at an estimated 186,000 tonnes (FAO). R ecent outputs include organised symposia and publications defining current knowledge. In rec ognising the need for better networks of scientists and technologists, a total of 5 applicat ions for financial support has been made to the EC COST Framework since 2010. Such applications , by initial pre-proposal, are assessed in 6 categories with a maximum score of 6 for each, giving a maximum score of 36. Preproposals scoring most highly, on average, are invi ted to submit a full proposal. Evaluation has been characterised by large variation in scores of individual assessors. For one example, scores of 36, 33, 32, 32, 28, 21,16 were awarded by 7 assessors, giving mean value = 28.3; SD = 7.23; CV%= 25.5. The divergence of the median v lue of 32 from the mean (28.3) shows a skewed distribution. Removal of the two low est outliers, gives a mean = 32.2; SD= 2.86; CV%= 8.9 and median = 32 and removes the skew . The use in ranking, of such a simple average of means, is clearly unreliable. Another ex ample, with a mean score of 31.25, gave rise to an invitation to submit a full proposal. Th is was done, involving 14 EU partner, and 4 international “reciprocal agreement”, countries. Th e outcome of this application was a score of 53, and below the cut-off score of 55, for furth er progression. The consensus conclusion of evaluation was that “the expected benefits are like ly to be non-European”. This conclusion is surprising and essentially without explanation. The selection of evaluators remains a concern. 64 th EAAP Annual meeting, 25-30 August, 2013, Nantes, France Symposium on South American Camelids and other Fibre AnimalsThe role of the agouti gene in white phenotype was explored in mice. The agouti signalling protein (ASP) can inhibit the differentiation of melanoblasts through the inhibition of the alfa-MSH-induced expression of microphtalmia (MITF) and its binding to a M box regulatory element. The level of microphtalmia in the cells is reduced. To investigate the role of agouti in this phenotype we characterised the transcript structures an relative mRNA expression levels in 13 white alpaca. The reverse transcription analysis of mRNA purified from skin biopsies revealed the presence of three transcripts with different 5’untranslated regions (UTRs) and color specific expression. One of the transcripts, possibly originating from a duplication event (intra-chromosomal recombination) of the agouti gene is characterised by a 5’UTR containing 142 bp of the NCPOA6 gene sequence. Furthermore, the raltive level expression analysis of mRNA demonstrates that the agouti gene has upregulated expression in white skin, suggesting a pleiotropic effect of agouti gene in the white phenotype. Resumen : Recombinacion cromosomica del gen agouti en alpacas blancas. Fue explorado en ratones el rol del gen agouti en el fenoripo blanco. La protein senalarizadora agouti (ASP) puede inibir la diferenciacion de los melanoblastos a traves de la inhibicion de la expresion alfa-MSH inducida de macroftalmia (MITF) y su union al elemento regulador Mbox. El nivel de macroftalmia en las celulas se reduce. Para investigar el rol del agouti en este fenotipo, caracterizamos las estructuras transcriptas a una relativa expresion del mRNA en 13 alpacas blancas blancas. El analisis de transcripcion reversa del mRNA purificado a partir de las biopsias de piel, revelaron la presencia de tres transciptos con diferentes regiones no traducidas del extremo 5’ (5’UTR) y expresiones de color especificas. Uno de los transcriptos, posiblemente procedente de un evento de duplicacion (recombinacion intra-cromosomico) del gen aguti se caracteriza por un 5’ UTR que contiene 142 pb del gen NCPOA6. Por otra parte, el analisis del nivel relativo de expresion del mRNA demuestra que el gen agouti tiene sobre expresion reguladora en piel blanca, lo que sugiere un efecto pleiotropico del gen agouti en el fenotipo blanco.The agouti gene encodes agouti signalling protein (ASIP) whic h regulates pheomelanin and eumelanin synthesis in mammals. To investigate the role of agouti in coat color variation of alpaca, we characterised the agouti gene on 27 black and 12 brown alpaca. The exon-4 hosts three loss-of-function recessive mutations: g.3836C >T, g.3896G>A and g.3866_3923del57, involved in eumelanin synthesis. The deletion at th e position p.C109-Rdel19 eliminates the two beta sheets and the R-F-F- motif from the agout i functional domain, which are essential against alfa-MSH. Therefore, the deleted allele app ears to lose function. The other ANPs observed at the amino acid position 98 and 118 chan ge the conserved R to C and the R-F-Fmotif into H-F-F-. The R-F-F- motif is important fo r functioning at MCRs; the disruption of this motif may result in a non functional agouti pr otein since the alteration of residues in and around R-F-F- causes a decrease in agouti protein i nhibition of alfa-MSH binding to MCRs during signal transduction. The three mutations are randomly distributed among the black alpaca. In our sample, we observed two genotypes : g.3836C>T/g.3896G>A (10 animals) and g.3836C>T/g.3866_3923del57 (17 animals). Among the brown alpaca, 2 are homozygous for the wild allele, 12 are heterozygous for g.3896G>A mutation, carriers for black phenotype.