Pau Miró-Martínez

Comparative study of approximate entropy and sample entropy robustness to spikes

OBJECTIVE There is an ongoing research effort devoted to characterize the signal regularity metrics approximate entropy (ApEn) and sample entropy (SampEn) in order to better interpret their results in the context of biomedical signal analysis. Along with this line, this paper addresses the influence of abnormal spikes (impulses) on ApEn and SampEn measurements. METHODS A set of test signals consisting of generic synthetic signals, simulated biomedical signals, and real RR records was created. These test signals were corrupted by randomly generated spikes. ApEn and SampEn were computed for all the signals under different spike probabilities and for 100 realizations. RESULTS The effect of the presence of spikes on ApEn and SampEn is different for test signals with narrowband line spectra and test signals that are better modeled as broadband random processes. In the first case, the presence of extrinsic spikes in the signal results in an ApEn and SampEn increase. In the second case, it results in an entropy decrease. For real RR records, the presence of spikes, often due to QRS detection errors, also results in an entropy decrease. CONCLUSIONS Our findings demonstrate that both ApEn and SampEn are very sensitive to the presence of spikes. Abnormal spikes should be removed, if possible, from signals before computing ApEn or SampEn. Otherwise, the results can lead to misunderstandings or misclassification of the signal regularity.

Influence of QRS complex detection errors on entropy algorithms. Application to heart rate variability discrimination

Signal entropy measures such as approximate entropy (ApEn) and sample entropy (SampEn) are widely used in heart rate variability (HRV) analysis and biomedical research. In this article, we analyze the influence of QRS detection errors on HRV results based on signal entropy measures. Specifically, we study the influence that QRS detection errors have on the discrimination power of ApEn and SampEn using the cardiac arrhythmia suppression trial (CAST) database. The experiments assessed the discrimination capability of ApEn and SampEn under different levels of QRS detection errors. The results demonstrate that these measures are sensitive to the presence of ectopic peaks: from a successful classification rate of 100%, down to a 75% when spikes are present. The discriminating capability of the metrics degraded as the number of misdetections increased. For an error rate of 2% the segmentation failed in a 12.5% of the experiments, whereas for a 5% rate, it failed in a 25%.

Comparative Study of Entropy Sensitivity to Missing Biosignal Data

Entropy estimation metrics have become a widely used method to identify subtle changes or hidden features in biomedical records. These methods have been more effective than conventional linear techniques in a number of signal classification applications, specially the healthy–pathological segmentation dichotomy. Nevertheless, a thorough characterization of these measures, namely, how to match metric and signal features, is still lacking. This paper studies a specific characterization problem: the influence of missing samples in biomedical records. The assessment is conducted using four of the most popular entropy metrics: Approximate Entropy, Sample Entropy, Fuzzy Entropy, and Detrended Fluctuation Analysis. The rationale of this study is that missing samples are a signal disturbance that can arise in many cases: signal compression, non-uniform sampling, or data transmission stages. It is of great interest to determine if these real situations can impair the capability of segmenting signal classes using such metrics. The experiments employed several biosignals: electroencephalograms, gait records, and RR time series. Samples of these signals were systematically removed, and the entropy computed for each case. The results showed that these metrics are robust against missing samples: With a data loss percentage of 50% or even higher, the methods were still able to distinguish among signal classes.

A new algorithm for quadratic sample entropy optimization for very short biomedical signals

This paper describes a new method to optimize the computation of the quadratic sample entropy (QSE) metric. The objective is to enhance its segmentation capability between pathological and healthy subjects for short and unevenly sampled biomedical records, like those obtained using ambulatory blood pressure monitoring (ABPM). In ABPM, blood pressure is measured every 20-30 min during 24h while patients undergo normal daily activities. ABPM is indicated for a number of applications such as white-coat, suspected, borderline, or masked hypertension. Hypertension is a very important clinical issue that can lead to serious health implications, and therefore its identification and characterization is of paramount importance. Nonlinear processing of signals by means of entropy calculation algorithms has been used in many medical applications to distinguish among signal classes. However, most of these methods do not perform well if the records are not long enough and/or not uniformly sampled. That is the case for ABPM records. These signals are extremely short and scattered with outliers or missing/resampled data. This is why ABPM Blood pressure signal screening using nonlinear methods is a quite unexplored field. We propose an additional stage for the computation of QSE independently of its parameter r and the input signal length. This enabled us to apply a segmentation process to ABPM records successfully. The experimental dataset consisted of 61 blood pressure data records of control and pathological subjects with only 52 samples per time series. The entropy estimation values obtained led to the segmentation of the two groups, while other standard nonlinear methods failed.

Description of a portable wireless device for high-frequency body temperature acquisition and analysis.

We describe a device for dual channel body temperature monitoring. The device can operate as a real time monitor or as a data logger, and has Bluetooth capabilities to enable for wireless data download to the computer used for data analysis. The proposed device is capable of sampling temperature at a rate of 1 sample per minute with a resolution of 0.01 °C . The internal memory allows for stand-alone data logging of up to 10 days. The device has a battery life of 50 hours in continuous real-time mode. In addition to describing the proposed device in detail, we report the results of a statistical analysis conducted to assess its accuracy and reproducibility.

Measuring body temperature time series regularity using approximate entropy and sample entropy

Approximate Entropy (ApEn) and Sample Entropy (SampEn) have proven to be a valuable analyzing tool for a number of physiological signals. However, the characterization of these metrics is still lacking. We applied ApEn and SampEn to body temperature time series recorded from patients in critical state. This study was aimed at finding the optimal analytical configuration to best distinguish between survivor and non-survivor records, and at gaining additional insight into the characterization of such tools. A statistical analysis of the results was conducted to support the parameter and metric selection criteria for this type of physiological signal.

Comparative study between Sample Entropy and Detrended Fluctuation Analysis performance on EEG records under data loss

This study compares two signal entropy measures, Sample Entropy (SampEn) and Detrended Fluctuation Analysis (DFA) over real EEG signals after a randomized sample removal. Both measures have demonstrated their ability to discern between, among others: control and pathologic EEG signals, seizure free or not, control and opened eyes EEG, and side of brain signals. Results show that SampEn behaves better when analyzing control signals, while DFA provides better segmentation results between epileptic signals, in the context of sample loss, particularly when discerning between seizure and seizure free signal intervals.

Customization of entropy estimation measures for human arterial hypertension records segmentation

This paper describes a new application of the recently developed Coefficient of Sample Entropy (CosEn) measure. This entropy estimator is specially suited for cases where the length of the time series is extremely short. CosEn has already been used successfully to characterize and detect atrial fibrillation, using as few as 12 heartbeats. We have customized the methodology employed for heartbeat interval series to blood pressure hypertensive (BPHT) human records. Little can be found about BPHT records and its nonlinear regularity analysis. The method described in this paper provides a good segmentation between control and pathologic groups, based on the corresponding labeled BPHT records. The experimental dataset was drawn from the available records at the Hypertension Unit of the University Hospital of Mostoles, in Spain. The hypertension related variables studied were systolic blood pressure (SBP), diastolic blood pressure (DBP) and mean blood pressure (MBP). The hypothesis test yielded the following results in each case: acceptance probability of 0 for SBP, 0.005 for DBP and 0 for MBP. The confidence intervals for the three variables were nonoverlapping.

Characterization of detrended fluctuation analysis in the context of glycemic time series

There is a growing interest in the analysis of hyperglycemia and its relationship with other pathologies. The level of glucose in blood is regulated by the flux/reflux and controlled by hyperglycemia hormones and hypoglycemic insulin. Glycemic profiles are characterized by a nonlinear and nonstationary behavior but also influenced by circadian rhythms and patient daily routine which introduce quasi- periodic trends into them. This type of signals are commonly analyzed by Detrended Fluctuation Analysis (DFA) which states that the control system in charge of regulating the glucose level usually holds a long- range negative correlation. But there is an inconsistency about the windowing lengths, as no standard or rules are set. This work studies the influence of the windowing length sequence, and shows that there is a need for selecting the optimal values in order to obtain a good differentiation between different groups, and these values are somehow determined by signal characteristics.