Paul Mäder

Impact of Land Use Intensity on the Species Diversity of Arbuscular Mycorrhizal Fungi in Agroecosystems of Central Europe

ABSTRACT The impact of land use intensity on the diversity of arbuscular mycorrhizal fungi (AMF) was investigated at eight sites in the “three-country corner” of France, Germany, and Switzerland. Three sites were low-input, species-rich grasslands. Two sites represented low- to moderate-input farming with a 7-year crop rotation, and three sites represented high-input continuous maize monocropping. Representative soil samples were taken, and the AMF spores present were morphologically identified and counted. The same soil samples also served as inocula for “AMF trap cultures” with Plantago lanceolata, Trifolium pratense, and Lolium perenne. These trap cultures were established in pots in a greenhouse, and AMF root colonization and spore formation were monitored over 8 months. For the field samples, the numbers of AMF spores and species were highest in the grasslands, lower in the low- and moderate-input arable lands, and lowest in the lands with intensive continuous maize monocropping. Some AMF species occurred at all sites (“generalists”); most of them were prevalent in the intensively managed arable lands. Many other species, particularly those forming sporocarps, appeared to be specialists for grasslands. Only a few species were specialized on the arable lands with crop rotation, and only one species was restricted to the high-input maize sites. In the trap culture experiment, the rate of root colonization by AMF was highest with inocula from the permanent grasslands and lowest with those from the high-input monocropping sites. In contrast, AMF spore formation was slowest with the former inocula and fastest with the latter inocula. In conclusion, the increased land use intensity was correlated with a decrease in AMF species richness and with a preferential selection of species that colonized roots slowly but formed spores rapidly.

Communities of arbuscular mycorrhizal fungi in arable soils are not necessarily low in diversity

Communities of arbuscular mycorrhizal fungi (AMF) in five agricultural field sites of different management intensities were studied. Variable regions of the ribosomal RNA genes were used to detect and identify AMF directly within colonized roots. Roots from a continuous maize monoculture showed low AMF diversity, in agreement with previous reports on molecular diversity of AMF in agricultural soils. In contrast, a substantially higher diversity of AMF was found throughout the long term ‘DOK’ field experiment, where organic and conventional agricultural practices have been compared side by side since 1978. In this experiment, a 7‐year crop rotation is performed under lower levels of inorganic fertilizer input and chemical pest control. These results are in good agreement with analyses of the spore community previously conducted in these field sites. In a third site, an organically managed leek field with soil of very high phosphate content reflecting the highly intensive conventional field history and intensive tillage, we detected a low‐diversity community comparable to the maize monoculture. In addition to fungi from Glomus group A, which have previously been reported to dominate arable soils, we regularly found members of the genera Scutellospora, Paraglomus and Acaulospora. The genus Acaulospora was shown to occur more frequently early in the growing season, suggesting that the life history strategy of AMF may influence the active community at a given time. These data show that the diversity of AMF is not always low in arable soils. Furthermore, low‐input agriculture involving crop rotation may provide better conditions to preserve AMF diversity, by preventing the selection for the few AMF taxa tolerating high nutrient levels.

Enhanced top soil carbon stocks under organic farming

It has been suggested that conversion to organic farming contributes to soil carbon sequestration, but until now a comprehensive quantitative assessment has been lacking. Therefore, datasets from 74 studies from pairwise comparisons of organic vs. nonorganic farming systems were subjected to metaanalysis to identify differences in soil organic carbon (SOC). We found significant differences and higher values for organically farmed soils of 0.18 ± 0.06% points (mean ± 95% confidence interval) for SOC concentrations, 3.50 ± 1.08 Mg C ha−1 for stocks, and 0.45 ± 0.21 Mg C ha−1 y−1 for sequestration rates compared with nonorganic management. Metaregression did not deliver clear results on drivers, but differences in external C inputs and crop rotations seemed important. Restricting the analysis to zero net input organic systems and retaining only the datasets with highest data quality (measured soil bulk densities and external C and N inputs), the mean difference in SOC stocks between the farming systems was still significant (1.98 ± 1.50 Mg C ha−1), whereas the difference in sequestration rates became insignificant (0.07 ± 0.08 Mg C ha−1 y−1). Analyzing zero net input systems for all data without this quality requirement revealed significant, positive differences in SOC concentrations and stocks (0.13 ± 0.09% points and 2.16 ± 1.65 Mg C ha−1, respectively) and insignificant differences for sequestration rates (0.27 ± 0.37 Mg C ha−1 y−1). The data mainly cover top soil and temperate zones, whereas only few data from tropical regions and subsoil horizons exist. Summarizing, this study shows that organic farming has the potential to accumulate soil carbon.

Microbial biomass and size-density fractions differ between soils of organic and conventional agricultural systems

Agricultural production systems have to combine management practices in order to sustain soil quality and also profitability. We investigated microbial biomass and size-density fractions of soils from a long-term field trial set up in 1978 at Therwil, Switzerland. It compares the economic and ecological performance of organic and conventional agricultural systems. Main differences of the systems were the amount and form of fertiliser as well as the plant protection strategy, whilst crop rotation and soil tillage were the same. Microbial biomass C and N as well as their ratios to the total and light fraction C and N pools in soils of the organic systems were higher than in conventional systems. This is interpreted as an enhanced decomposition of the easily available light fraction pool of soil organic matter (SOM) with increasing amounts of microbial biomass. The role of microbial biomass as a regulator and light fraction organic matter as an indicator of decomposition is discussed. The presented results indicate that labile pools of SOM are distinctly affected by long-term management practices.

Arbuscular mycorrhizae in a long-term field trial comparing low-input (organic, biological) and high-input (conventional) farming systems in a crop rotation

Abstract Arbuscular mycorrhizal (AM) root colonization was studied in a long-term field trial in which four farming systems currently in use in Switzerland were continuously applied to a randomized set of plots at a single field site from 1978 till 1993. There were two low-input farming systems (organic and bio-dynamic) and two high-input (conventional) farming systems (according to Swiss guidelines of integrated plant production with and without farmyard manure). The systems had an identical 7-year crop rotation and tillage scheme and differed essentially only in the amount and type of fertilizer supplied and in plant protection management. The percentage of root colonization by AM fungi was determined in field samples 2–3 times over the growing season in crops in the rotation, namely in winter wheat (Triticum aestivum L. cv. Sardona), vetch-rye and grass-clover. We found the percentage of root length colonized by AM fungi to be 30–60% higher (P≤0.05) in the plants grown in soils from the low-input farming systems than in those grown in conventionally farmed soils. Approximately 50% of the variation of AM root colonization was explained by chemical properties of the soils (pH, soluble P and K, exchangeable Mg), the effect of soluble soil P being most pronounced. The potential of the field soils from the differently managed plots to cause symbiosis with AM fungi was tested in a glasshouse experiment, using wheat as a host plant. Soils from the low-input farming systems had a greatly enhanced capacity to initiate AM symbiosis. The relative differences in this capacity remained similar when propagules of the AM fungus Glomus mosseae were experimentally added to the soils, although overall root colonization by AM fungi was 2.8 times higher.

Distinct soil microbial diversity under long-term organic and conventional farming

Low-input agricultural systems aim at reducing the use of synthetic fertilizers and pesticides in order to improve sustainable production and ecosystem health. Despite the integral role of the soil microbiome in agricultural production, we still have a limited understanding of the complex response of microbial diversity to organic and conventional farming. Here we report on the structural response of the soil microbiome to more than two decades of different agricultural management in a long-term field experiment using a high-throughput pyrosequencing approach of bacterial and fungal ribosomal markers. Organic farming increased richness, decreased evenness, reduced dispersion and shifted the structure of the soil microbiota when compared with conventionally managed soils under exclusively mineral fertilization. This effect was largely attributed to the use and quality of organic fertilizers, as differences became smaller when conventionally managed soils under an integrated fertilization scheme were examined. The impact of the plant protection regime, characterized by moderate and targeted application of pesticides, was of subordinate importance. Systems not receiving manure harboured a dispersed and functionally versatile community characterized by presumably oligotrophic organisms adapted to nutrient-limited environments. Systems receiving organic fertilizer were characterized by specific microbial guilds known to be involved in degradation of complex organic compounds such as manure and compost. The throughput and resolution of the sequencing approach permitted to detect specific structural shifts at the level of individual microbial taxa that harbours a novel potential for managing the soil environment by means of promoting beneficial and suppressing detrimental organisms.

Does organic agriculture reduce soil erodibility? The results of a long-term field study on loess in Switzerland

In a long-term field trial in northwestern Switzerland, the effects of organic and conventional land-use management on earthworm populations and on soil erodibility were investigated. A silt loam soil which had developed in deep deposits of alluvial loess characterised the study site. Three methods were applied to analyse soil erodibility, at three different periods between autumn 1992 and 1993: aggregate stability (measured in the laboratory by a high energy rainfall simulation and by percolation) and soil particle detachment (measured in the field by splash erosion). Earthworm biomass and density, as well as the population diversity, were significantly greater on the organic plots than on the conventional plots. Likewise, the aggregate stability of the organic plots, when determined by means of percolation, was significantly better. Therefore, erosion susceptibility is greater on plots farmed conventionally. On the other hand, splash erosion monitoring and simulated rainfall experiments only partially highlight differences in erodibility between the two main land-management methods. Future comparisons between the farming systems should also include farmer managed fields with greater differentiation in crop rotations and cultural practices like tillage, fertilisation and pesticide use.

Phosphorus budget and phosphorus availability in soils under organic and conventional farming

The aim of this work was to assess to which extent organic farming practices would affect the accumulation of total and available phosphorus (P) in a cropped soil in comparison to conventional practices. In order to achieve this, soil samples were taken from a long-term field trial comparing a non-fertilised control (NON), two conventionally cultivated treatments (MIN, CON), and two organically cultivated treatments (ORG, DYN). Soil samples were taken from each treatment at two depths (0-20 and 30-50 cm) before starting the field trial (1977) and at the end of every three crop rotations (1984, 1991 and 1998). They were then analysed for total P (Pt), total inorganic P (Pi), total organic P (Po) and isotopically exchangeable Pi. After 21 years, the average P input-output budget reached -20.9 kg P ha−1 a−1 for NON, -7.8 for DYN, -5.7 for ORG, -5.0 for MIN and +3.8 for CON. Total P, Pi as well as the amount of Pi isotopically exchangeable within 1 minute (E1) were positively correlated to the P budget. Comparison between P budget and Pt in the top- and subsoils of the fertilised treatments suggested a net transfer of P from the 0–20 to the 30–50 cm layers between 13 and 26 kg P ha−1 a−1during the first rotation and between 3 and 12 kg P ha−1 a−1during the second rotation. During the third rotation a net upward movement of P from the subsurface to the topsoil ranging between 3.7 and 10.5 kg P ha−1 a−1was estimated. In the topsoil, E1decreased from an initial value of 12 mg P kg−1 to 11 in CON, 8 in MIN, 6 in ORG, 5 in DYN and 2 in NON after 21 years. In the subsoil, E1 increased from an initial value of 2 mg P kg−1 to 4 in MIN, ORG, DYN and NON and to 6 in CON. These results show that, with the exception of NON, all treatments had still an adequate level of available P after 21 years of trial and that, in this low to moderately P sorbing soil, an equilibrated input-output budget allows to maintain P availability at a constant level. In the organic systems, yields have so far partly been attained at the expense of soil reserves or residual P from earlier fertiliser applications.

Greenhouse gas fluxes from agricultural soils under organic and non-organic management — A global meta-analysis

It is anticipated that organic farming systems provide benefits concerning soil conservation and climate protection. A literature search on measured soil-derived greenhouse gas (GHG) (nitrous oxide and methane) fluxes under organic and non-organic management from farming system comparisons was conducted and followed by a meta-analysis. Up to date only 19 studies based on field measurements could be retrieved. Based on 12 studies that cover annual measurements, it appeared with a high significance that area-scaled nitrous oxide emissions from organically managed soils are 492 ± 160 kg CO2 eq. ha(-1) a(-1) lower than from non-organically managed soils. For arable soils the difference amounts to 497 ± 162 kg CO2 eq. ha(-1) a(-1). However, yield-scaled nitrous oxide emissions are higher by 41 ± 34 kg CO2 eq. t(-1) DM under organic management (arable and use). To equalize this mean difference in yield-scaled nitrous oxide emissions between both farming systems, the yield gap has to be less than 17%. Emissions from conventionally managed soils seemed to be influenced mainly by total N inputs, whereas for organically managed soils other variables such as soil characteristics seemed to be more important. This can be explained by the higher bioavailability of the synthetic N fertilisers in non-organic farming systems while the necessary mineralisation of the N sources under organic management leads to lower and retarded availability. Furthermore, a higher methane uptake of 3.2 ± 2.5 kg CO2 eq. ha(-1) a(-1) for arable soils under organic management can be observed. Only one comparative study on rice paddies has been published up to date. All 19 retrieved studies were conducted in the Northern hemisphere under temperate climate. Further GHG flux measurements in farming system comparisons are required to confirm the results and close the existing knowledge gaps.

Long-term effects of organic farming on fungal and bacterial residues in relation to microbial energy metabolism

Samples from the bio-dynamic, bio-organic, and conventional trial, Therwil, Switzerland, were analyzed with the aim of determining the effects of organic land use management on the energy metabolism of the soil microbial biomass and on the fraction of microbial residues. The contents of adenylates, adenosine triphosphate (ATP), glucosamine, muramic acid, and galactosamine were significantly largest in the biodynamic organic farming (BYODIN) treatment and significantly lowest in the conventional farming treatment with inorganic fertilization (CONMIN). In contrast, the ergosterol-to-ATP ratio and fungal C-to-bacterial C ratios were significantly lowest in the BYODIN treatment and significantly largest in the CONMIN treatment. No clear treatment effects were observed for the ergosterol content and the adenylate energy charge (AEC), the ATP-to-microbial biomass C ratio and the ergosterol-to-fungal C ratio. Ergosterol, an indicator for saprotrophic fungal biomass, and fungal residues were significantly correlated. The microbial biomass carbon-to-nitrogen ratio showed a negative relationship with the AEC and strong positive relationships with the ratios ergosterol-to-microbial biomass C, ergosterol-to-ATP and fungal C-to-bacterial C. In conclusion, the long-term application of farmyard manure in combination with organic farming practices led to an increased accumulation of bacterial residues.