Paul W. Hill

Acquisition and assimilation of nitrogen as peptide-bound and D-enantiomers of amino acids by wheat.

Nitrogen is a key regulator of primary productivity in many terrestrial ecosystems. Historically, only inorganic N (NH4 + and NO3 -) and L-amino acids have been considered to be important to the N nutrition of terrestrial plants. However, amino acids are also present in soil as small peptides and in D-enantiomeric form. We compared the uptake and assimilation of N as free amino acid and short homopeptide in both L- and D-enantiomeric forms. Sterile roots of wheat (Triticum aestivum L.) plants were exposed to solutions containing either 14C-labelled L-alanine, D-alanine, L-trialanine or D-trialanine at a concentration likely to be found in soil solution (10 µM). Over 5 h, plants took up L-alanine, D-alanine and L-trialanine at rates of 0.9±0.3, 0.3±0.06 and 0.3±0.04 µmol g−1 root DW h−1, respectively. The rate of N uptake as L-trialanine was the same as that as L-alanine. Plants lost ca.60% of amino acid C taken up in respiration, regardless of the enantiomeric form, but more (ca.80%) of the L-trialanine C than amino acid C was respired. When supplied in solutions of mixed N form, N uptake as D-alanine was ca.5-fold faster than as NO3 -, but slower than as L-alanine, L-trialanine and NH4 +. Plants showed a limited capacity to take up D-trialanine (0.04±0.03 µmol g−1 root DW h−1), but did not appear to be able to metabolise it. We conclude that wheat is able to utilise L-peptide and D-amino acid N at rates comparable to those of N forms of acknowledged importance, namely L-amino acids and inorganic N. This is true even when solutes are supplied at realistic soil concentrations and when other forms of N are available. We suggest that it may be necessary to reconsider which forms of soil N are important in the terrestrial N cycle.

Seasonal variability of apoplastic NH4+ and pH in an intensively managed grassland

The stomatal compensation point of ammonia (χs) is a major factor controlling the exchange of atmospheric ammonia (NH3) with vegetation. It is known to depend on the supply of nitrogen and to vary among plant species, but its seasonal variation has not yet been reported for grassland. In this study, we present the temporal variation of apoplastic NH4+ concentration ([NH4+]apo) and pH (pHapo) measured in leaves of Lolium perenne L. in a grassland, through two periods of cutting / fertilisation, followed by a livestock grazing period. The total free NH4+ concentration measured in foliage ([NH4+]fol), and soil mineral NH4+ and NO3− concentration are also presented. The value of [NH4+]apo varied from less than 0.01 mM to a maximum of 0.5 mM occurring just after fertilisation, whereas the apoplastic pH ranged from pH 6 to 6.5 for most of the time and increased up to pH 7.8, 9 days after the second fertilisation, when grazing started. [NH4+]fol varied between 20 and 50 μg N-NH4+ g−1 f.w. The compensation point at 20°C, ranged from 0.02 μg NH3 m−3 between the fertilisations to 10 μg NH3 m−3 just after the second fertilisation. The reasons for these seasonal changes are discussed, with respect to plant metabolism and the concentration of ammonium and nitrate in the soil.

Juniperus communis L. ssp. communis at Balnaguard, Scotland: Foliar carbon discrimination (δ13C) and 15-N natural abundance (δ15N) suggest gender-linked differences in water and N use

Summary The ecophysiology of stands of Juniperus communis L. ssp. communis at Balnaguard was examined by the relatively non-invasive methods of analysis of foliar · 13C and ·15N and the N and chlorophyll contents of foliar samples of genets of known sex and location in three sub-sites. The ratio of male to female plants was close to 1.0 on the two drier sub-sites, but was only 0.09 at the wettest sub-site. The ·13C of female plants was significantly more negative than that of males at one of the drier sub-sites, with no significant differences between genders at other sub-sites. ·13C of male plants was significantly lower at the wetter sub-site than at the other two sub-sites. Foliar %N and foliar chlorophyll contents were lowest at the wettest sub-site for both genders. The strong gender and soil water dependence of foliar ·13C which was demonstrated in this work extends previous observations, made on deciduous woody perennials, to conifers and to waterlogged soils. The strong patterns for interactions o...

How significant to plant N nutrition is the direct consumption of soil microbes by roots

Summary –The high degree to which plant roots compete with soil microbes for organic forms of nitrogen (N) is becoming increasingly apparent. This has culminated in the finding that plants may consume soil microbes as a source of N, but the functional significance of this process remains unknown. –We used 15N- and 14C-labelled cultures of soil bacteria to measure rates of acquisition of microbes by sterile wheat roots and plants growing in soil. We compared these rates with acquisition of 15N delivered as nitrate, amino acid monomer (l-alanine) and short peptide (l-tetraalanine), and the rate of decomposition of [14C] microbes by indigenous soil microbiota. –Acquisition of microbe 15N by both sterile roots and roots growing in soil was one to two orders of magnitude slower than acquisition of all other forms of 15N. Decomposition of microbes was fast enough to account for all 15N recovered, but approximately equal recovery of microbe 14C suggests that microbes entered roots intact. –Uptake of soil microbes by wheat (Triticum aestivum) roots appears to take place in soil. If wheat is typical, the importance of this process to terrestrial N cycling is probably minor in comparison with fluxes of other forms of soil inorganic and organic N.

Transformations in DOC along a source to sea continuum; impacts of photo-degradation, biological processes and mixing

Peatlands export significant amounts of dissolved organic carbon (DOC) to freshwaters, but the quantity of DOC reaching marine environments is typically less than the input to the fluvial system due to processing within the water column. Key removal processes include photo-chemical degradation, and heterotrophic bacterial respiration. In this study we examined these processes using 14C-labelled DOC to quantify the extent of DOC breakdown and to determine its fate following irradiation under controlled laboratory conditions. We examined the influence of microbial processes occurring within the water column, the potential role of stream-bed biofilms, and the possible modifying effects of downstream mixing, as DOC in water from the peatland encounters runoff from upland mineral soils (“Mountain”), nutrient-rich runoff from agricultural soils, and seawater in an estuary. Our results demonstrated conservative mixing of DOC from Peatland and Mountain waters but interactive effects when Peatland water was mixed with Agricultural and Estuary waters and exposed to solar radiation. The mixing of Peatland and Agricultural waters led to net DOC production, suggesting that DOC was only partially degraded by solar radiation and that the products of this might have fuelled autotrophic microbial growth in the samples. The mixing of Peatland water with saline estuary water resulted in net DOC loss following irradiation, suggesting a role for sunlight in enhancing the flocculation of DOC to particulate organic carbon (POC) in saline environments.

Evaluation of Dissolved Organic Carbon as a Soil Quality Indicator in National Monitoring Schemes

Background Monitoring the properties of dissolved organic carbon (DOC) in soil water is frequently used to evaluate changes in soil quality and to explain shifts in freshwater ecosystem functioning. Methods Using >700 individual soils (0–15 cm) collected from a 209,331 km2 area we evaluated the relationship between soil classification (7 major soil types) or vegetation cover (8 dominant classes, e.g. cropland, grassland, forest) and the absorbance properties (254 and 400 nm), DOC quantity and quality (SUVA, total soluble phenolics) of soil water. Results Overall, a good correlation (r 2 = 0.58) was apparent between soil water absorbance and DOC concentration across the diverse range of soil types tested. In contrast, both DOC and the absorbance properties of soil water provided a poor predictor of SUVA or soluble phenolics which we used as a measure of humic substance concentration. Significant overlap in the measured ranges for UV absorbance, DOC, phenolic content and especially SUVA of soil water were apparent between the 8 vegetation and 7 soil classes. A number of significant differences, however, were apparent within these populations with total soluble phenolics giving the greatest statistical separation between both soil and vegetation groups. Conclusions We conclude that the quality of DOC rather than its quantity provides a more useful measure of soil quality in large scale surveys.

Comparison of the Effects of Wet N Deposition (NH4Cl) and Dry N Deposition (NH3) on UK Moorland Species

Increases in N deposition (wet and dry) have been associated with a decline in semi-natural plant communities, adapted for growth on nutrient poor soils in the UK and Europe. The impacts of N deposition applied as either wet NH4+ or gaseous NH3 on vegetation (7 species) from acid moorland in SE Scotland were compared in a dose-response study. Wet N deposition at 0, 8, 16, 32, 64, 128 kg N ha−1 y−1 was applied as NH4Cl, and dry deposition as gaseous NH3 (2, 6, 20, 50, 90 µg NH3 m−3) under controlled conditions in open-top chambers. A strong linear dose-response relationship (p<0.05) was found between foliar N content in all seven plant species and applied NH4−N. However, in the NH3 treatment, only C. vulgaris and P. commune showed a significant response to increasing N additions. NH3 was found to increase the rate of water loss in Calluna in both autumn and winter by comparison with wet deposition. For Eriophorum vaginatum, the NH3 and NH4+ treatments showed significant N dose response relationships for biomass. A significant increase in above ground biomass, proportional to the added N, was found for Narthecium ossifragum when N was applied as NH3 compared to NH4+.

Challenging the paradigm of nitrogen cycling: no evidence of in situ resource partitioning by coexisting plant species in grasslands of contrasting fertility

In monoculture, certain plant species are able to preferentially utilize different nitrogen (N) forms, both inorganic and organic, including amino acids and peptides, thus forming fundamental niches based on the chemical form of N. Results from field studies, however, are inconsistent: Some showing that coexisting plant species predominantly utilize inorganic N, while others reveal distinct interspecies preferences for different N forms. As a result, the extent to which hypothetical niches are realized in nature remains unclear. Here, we used in situ stable isotope tracer techniques to test the idea, in temperate grassland, that niche partitioning of N based on chemical form is related to plant productivity and the relative availability of organic and inorganic N. We also tested in situ whether grassland plants vary in their ability to compete for, and utilize peptides, which have recently been shown to act as an N source for plants in strongly N-limited ecosystems. We hypothesized that plants would preferentially use NO3−-N and NH4+-N over dissolved organic N in high-productivity grassland where inorganic N availability is high. On the other hand, in low-productivity grasslands, where the availability of dissolved inorganic N is low, and soil availability of dissolved organic N is greater, we predicted that plants would preferentially use N from amino acids and peptides, prior to microbial mineralization. Turves from two well-characterized grasslands of contrasting productivity and soil N availability were injected, in situ, with mixtures of 15N-labeled inorganic N (NO3− and NH4+) and 13C15N labeled amino acid (l-alanine) and peptide (l-tri-alanine). In order to measure rapid assimilation of these N forms by soil microbes and plants, the uptake of these substrates was traced within 2.5 hours into the shoots of the most abundant plant species, as well as roots and the soil microbial biomass. We found that, contrary to our hypothesis, the majority of plant species across both grasslands took up most N in the form of NH4+, suggesting that inorganic N is their predominant N source. However, we did find that organic N was a source of N which could be utilized by plant species at both sites, and in the low-productivity grassland, plants were able to capture some tri-alanine-N directly. Although our findings did not support the hypothesis that differences in the availability of inorganic and organic N facilitate resource partitioning in grassland, they do support the emerging view that peptides represent a significant, but until now neglected, component of the terrestrial N cycle.

Biochar stimulates the decomposition of simple organic matter and suppresses the decomposition of complex organic matter in a sandy loam soil

Incorporating crop residues and biochar has received increasing attention as tools to mitigate atmospheric carbon dioxide (CO2) emissions and promote soil carbon (C) sequestration. However, direct comparisons between biochar, torrefied biomass, and straw on both labile and recalcitrant soil organic matter (SOM) remain poorly understood. In this study, we explored the impact of biochars produced at different temperatures and torrefied biomass on the simple C substrates (glucose, amino acids), plant residues (Lolium perenne L.), and native SOM breakdown in soil using a 14C labeling approach. Torrefied biomass and biochars produced from wheat straw at four contrasting pyrolysis temperatures (250, 350, 450, and 550 °C) were incorporated into a sandy loam soil and their impact on C turnover compared to an unamended soil or one amended with unprocessed straw. Biochar, torrefied biomass, and straw application induced a shift in the soil microbial community size, activity, and structure with the greatest effects in the straw‐amended soil. In addition, they also resulted in changes in microbial carbon use efficiency (CUE) leading to more substrate C being partitioned into catabolic processes. While overall the biochar, torrefied biomass, and straw addition increased soil respiration, it reduced the turnover rate of the simple C substrates, plant residues, and native SOM and had no appreciable effect on the turnover rate of the microbial biomass. The negative SOM priming was positively correlated with biochar production temperature. We therefore ascribe the increase in soil CO2 efflux to biochar‐derived C rather than that originating from SOM. In conclusion, the SOM priming magnitude is strongly influenced by both the soil organic C quality and the biochar properties. In comparison with straw, biochar has the greatest potential to promote soil C storage. However, straw and torrefied biomass may have other cobenefits which may make them more suitable as a CO2 abatement strategy.

Influence of biochar produced from different pyrolysis temperature on nutrient retention and leaching

ABSTRACT Biochar application has been received much attention because biochar can improve the fertilizer utilization efficiency of soil. However, the effect of biochar produced at different temperature on the nutrient retention and leaching remains poorly understood. In this study, we observed the nutrients leaching from a sandy loam soil amended with biochar produced at different temperature. The properties of biochars produced from wheat straw at four contrasting pyrolysis temperatures (250, 350, 450, and 550°C) showed that increasing pyrolysis temperature increased pH value and specific surface area but reduced the electrical conductivity and cation exchange capacity. With the temperature increased, the nitrogen loss was significant decreased (p > 0.05) from 109.6 mg to 53.3 mg in biochar amended soil. However, dissolved organic carbon (DOC), available P, Na and K were significant increased (p > 0.05). These results demonstrate that the pyrolytic temperature has a great influence on biochar properties, which in turn affect the leaching of the available nutrients.