Pedro M. Raposeiro

Using invertebrate remains and pigments in the sediment to infer changes in trophic structure after fish introduction in Lake Fogo: a crater lake in the Azores

Fish introduction may have marked effects on the trophic dynamics and ecological state of former fishless lakes, but due to scarcity of historical data this can seldom be documented. We used remains of cladoceran, chironomid and pigment assemblages in the sediment archive to unravel the effect of introduction of carp (Cyprinus carpio), rainbow trout (Oncorhynchus mykiss) and a cyprinid (Chondrostoma oligolepis) in Lake Fogo, the Azores (Portugal). The stratigraphical record showed two major shifts in community assemblage coinciding with the time of introduction of carp (AD ca. 1890) and trout (AD 1941), respectively. Carp introduction was followed by an abrupt and major decline in the abundance of chironomids, a shift in the cladoceran community from a benthic to a more pelagic dominated community, and Daphnia size was significantly reduced. Pigment assemblages also indicated a shift from a benthic to a pelagic dominated ecosystem, as cryptophytes became markedly more abundant at the expense of benthic diatoms. Trout introduction was followed by a return to a more benthic cladoceran and benthic algae (pigments) dominated state, which we attribute to trout predation on carp leading to improved water clarity. A steady increase in the abundance of pigments and cladoceran remains followed, suggesting enhanced productivity, which may be attributed to enhanced atmospheric nitrogen deposition and introduction of C. oligolepis. We conclude that fish introduction has profoundly altered the trophic dynamics and the relative importance of benthic and pelagic production in this species poor and natural fishless lake in the Azores, and likely in most others lakes at the archipelago islands as fish stocking has been a widespread practice.

Colonization and diversification of aquatic insects on three Macaronesian archipelagos using 59 nuclear loci derived from a draft genome.

The study of processes driving diversification requires a fully sampled and well resolved phylogeny, although a lack of phylogenetic markers remains a limitation for many non-model groups. Multilocus approaches to the study of recent diversification provide a powerful means to study the evolutionary process, but their application remains restricted because multiple unlinked loci with suitable variation for phylogenetic or coalescent analysis are not available for most non-model taxa. Here we identify novel, putative single-copy nuclear DNA (nDNA) phylogenetic markers to study the colonization and diversification of an aquatic insect species complex, Cloeon dipterum L. 1761 (Ephemeroptera: Baetidae), in Macaronesia. Whole-genome sequencing data from one member of the species complex were used to identify 59 nDNA loci (32,213 base pairs), followed by Sanger sequencing of 29 individuals sampled from 13 islands of three Macaronesian archipelagos. Multispecies coalescent analyses established six putative species. Three island species formed a monophyletic clade, with one species occurring on the Azores, Europe and North America. Ancestral state reconstruction indicated at least two colonization events from the mainland (to the Canaries, respectively Azores) and one within the archipelago (between Madeira and the Canaries). Random subsets of the 59 loci showed a positive linear relationship between number of loci and node support. In contrast, node support in the multispecies coalescent tree was negatively correlated with mean number of phylogenetically informative sites per locus, suggesting a complex relationship between tree resolution and marker variability. Our approach highlights the value of combining genomics, coalescent-based phylogeography, species delimitation, and phylogenetic reconstruction to resolve recent diversification events in an archipelago species complex.

Biogeography and lake morphometry drive diatom and chironomid assemblages’ composition in lacustrine surface sediments of oceanic islands

Subfossil biotic assemblages in lakes’ surface sediments have been used to infer ecological conditions across environmental gradients. Local variables are usually the major drivers of assemblage composition, but in remote oceanic islands biogeographic filters may play a significant role. To assess the contribution of local and regional filters in the composition of subfossil diatom and chironomid assemblages in surface sediments, 41 lakes in Azores archipelago were studied and related to environmental variables. Ordination techniques were used to identify the forcing factors that best explain the composition of these assemblages. Both assemblages are influenced by multiple limnological variables (conductivity, pH and nutrients). However, diatom assemblages differed mainly in the proportion of planktonic versus benthic species along lakes’ depth gradient while chironomids differed significantly among islands but not among lake depths. Thus, biogeographic filters play an important role in shaping islands’ freshwater communities, particularly insect ones, more influenced by geographic variables. Results demonstrate the accuracy and potential of biotic remains in sediments for applied studies of lake ecology, trophic status, climatic trends and ecological reconstruction and evolution of lakes. In the Azores, the application of this information for the development of inference models is envisaged as a further step to accomplish these goals.

Diatom assemblages and their associated environmental drivers in isolated oceanic island streams (Azores archipelago as case study)

The identification of higher scale geographical processes (e.g., island location) that shape regional (catchment and landscape patterns) and local factors (e.g., water quality, microhabitat) is crucial to a correct understanding of diatom distribution, especially in isolated oceanic islands’. To assess the contribution of these processes in the composition of diatom assemblages in insular permanent streams, a total of 316 samples were studied from 37 sites along 14 permanent streams in Azores archipelago and related to environmental variables. Ordination techniques were used to identify the forcing factors that best explain the composition of diatom assemblages. The results revealed how individual and collective patterns emerging from local, regional, and geographic factors, and their shared variance, provided us with more detailed insight into what factors determine the structure of insular diatom assemblages in Azorean streams. The variance explained by local factors (24.3%) dominated over the regional (20.9%) and geographic fractions (18.5%). This result supports the notion that insular stream ecosystems and their communities are under strong abiotic control, as well as their continental counterparts. The results of this study provide support for current and future stream ecosystem research and baseline information for developing integrated freshwater management strategies for streams on the Azorean archipelago.

Contribution of aquatic shredders to leaf litter decomposition in Atlantic island streams depends on shredder density and litter quality

It has been widely reported that shredders play an important role in leaf decomposition, especially in continental temperate streams. However, the paucity of shredders in many oceanic island streams leads to a greater contribution of microbes to litter decomposition in these streams. In this study, we investigated the importance of shredder presence and density (three levels) and leaf litter identity (Alnus glutinosa, Clethra arborea and Acacia melanoxylon) on leaf litter decomposition in one stream located in the Azores Archipelago. Coarse and fine mesh bags were used to allow natural colonisation of leaf litter by benthic macroinvertebrates or to exclude macroinvertebrates respectively. Treatments with one and three shredders were accomplished by enclosing one or three shredders in the fine mesh bags. Rates of litter decomposition differed significantly among shredder density treatments only for A. glutinosa and C. arborea. Decomposition rates were significantly faster for the natural within-stream shredder density treatment than for other shredder treatments. Shredder density differed significantly among litter species, being higher in A. glutinosa than in C. arborea and A. melanoxylon. The results indicate that when shredders are present at high densities in oceanic island streams they can substantially contribute to the decomposition of high-quality leaf litter, whereas the decomposition of hard leaf litter is mostly performed by the microbial community.