Peter J. Mucha

Community Structure in Time-Dependent, Multiscale, and Multiplex Networks

Network Notation Networks are often characterized by clusters of constituents that interact more closely with each other and have more connections to one another than they do with the rest of the components of the network. However, systematically identifying and studying such community structure in complicated networks is not easy, especially when the network interactions change over time or contain multiple types of connections, as seen in many biological regulatory networks or social networks. Mucha et al. (p. 876) developed a mathematical method to allow detection of communities that may be critical functional units of such networks. Application to real-world tasks—like making sense of the voting record in the U.S. Senate—demonstrated the promise of the method. A general mathematical method used to identify closely interacting groups can explain the behavior of complicated networks. Network science is an interdisciplinary endeavor, with methods and applications drawn from across the natural, social, and information sciences. A prominent problem in network science is the algorithmic detection of tightly connected groups of nodes known as communities. We developed a generalized framework of network quality functions that allowed us to study the community structure of arbitrary multislice networks, which are combinations of individual networks coupled through links that connect each node in one network slice to itself in other slices. This framework allows studies of community structure in a general setting encompassing networks that evolve over time, have multiple types of links (multiplexity), and have multiple scales.

Dynamic reconfiguration of human brain networks during learning

Human learning is a complex phenomenon requiring flexibility to adapt existing brain function and precision in selecting new neurophysiological activities to drive desired behavior. These two attributes—flexibility and selection—must operate over multiple temporal scales as performance of a skill changes from being slow and challenging to being fast and automatic. Such selective adaptability is naturally provided by modular structure, which plays a critical role in evolution, development, and optimal network function. Using functional connectivity measurements of brain activity acquired from initial training through mastery of a simple motor skill, we investigate the role of modularity in human learning by identifying dynamic changes of modular organization spanning multiple temporal scales. Our results indicate that flexibility, which we measure by the allegiance of nodes to modules, in one experimental session predicts the relative amount of learning in a future session. We also develop a general statistical framework for the identification of modular architectures in evolving systems, which is broadly applicable to disciplines where network adaptability is crucial to the understanding of system performance.

Social Structure of Facebook Networks

We study the social structure of Facebook “friendship” networks at one hundred American colleges and universities at a single point in time, and we examine the roles of user attributes–gender, class year, major, high school, and residence–at these institutions. We investigate the influence of common attributes at the dyad level in terms of assortativity coefficients and regression models. We then examine larger-scale groupings by detecting communities algorithmically and comparing them to network partitions based on user characteristics. We thereby examine the relative importance of different characteristics at different institutions, finding for example that common high school is more important to the social organization of large institutions and that the importance of common major varies significantly between institutions. Our calculations illustrate how microscopic and macroscopic perspectives give complementary insights on the social organization at universities and suggest future studies to investigate such phenomena further.

Rigid fluid: animating the interplay between rigid bodies and fluid

We present the Rigid Fluid method, a technique for animating the interplay between rigid bodies and viscous incompressible fluid with free surfaces. We use distributed Lagrange multipliers to ensure two-way coupling that generates realistic motion for both the solid objects and the fluid as they interact with one another. We call our method the rigid fluid method because the simulator treats the rigid objects as if they were made of fluid. The rigidity of such an object is maintained by identifying the region of the velocity field that is inside the object and constraining those velocities to be rigid body motion. The rigid fluid method is straightforward to implement, incurs very little computational overhead, and can be added as a bridge between current fluid simulators and rigid body solvers. Many solid objects of different densities (e.g., wood or lead) can be combined in the same animation.

Comparing Community Structure to Characteristics in Online Collegiate Social Networks

We study the structure of social networks of students by examining the graphs of Facebook “friendships” at five U.S. universities at a single point in time. We investigate the community structure of each single-institution network and employ visual and quantitative tools, including standardized pair-counting methods, to measure the correlations between the network communities and a set of self-identified user characteristics (residence, class year, major, and high school). We review the basic properties and statistics of the employed pair-counting indices and recall, in simplified notation, a useful formula for the

Melting and flowing

z

Task-based core-periphery organization of human brain dynamics.

-score of the Rand coefficient. Our study illustrates how to examine different instances of social networks constructed in similar environments, emphasizes the array of social forces that combine to form “communities,” and leads to comparative observations about online social structures, which reflect offline social structures. We calculate the relative contributions of different characteristics to the community structure of individual universities and compare these relative contributions at different universities. For example, we examine the importance of common high school affiliation at large state universities and the varying degrees of influence that common major can have on the social structure at different universities. The heterogeneity of the communities that we observe indicates that university networks typically have multiple organizing factors rather than a single dominant one.

Particle-based simulation of granular materials

We present a fast and stable system for animating materials that melt, flow, and solidify. Examples of real-world materials that exhibit these phenomena include melting candles, lava flow, the hardening of cement, icicle formation, and limestone deposition. We animate such phenomena by physical simulation of fluids --- in particular the incompressible viscous Navier-Stokes equations with free surfaces, treating solid and nearly-solid materials as very high viscosity fluids. The computational method is a modification of the Marker-and-Cell (MAC) algorithm in order to rapidly simulate fluids with variable and arbitrarily high viscosity. This allows the viscosity of the material to change in space and time according to variation in temperature, water content, or any other spatial variable, allowing different locations in the same continuous material to exhibit states ranging from the absolute rigidity or slight bending of hardened wax to the splashing and sloshing of water. We create detailed polygonal models of the fluid by splatting particles into a volumetric grid and we render these models using ray tracing with sub-surface scattering. We demonstrate the method with examples of several viscous materials including melting wax and sand drip castles.

Water drops on surfaces

As a person learns a new skill, distinct synapses, brain regions, and circuits are engaged and change over time. In this paper, we develop methods to examine patterns of correlated activity across a large set of brain regions. Our goal is to identify properties that enable robust learning of a motor skill. We measure brain activity during motor sequencing and characterize network properties based on coherent activity between brain regions. Using recently developed algorithms to detect time-evolving communities, we find that the complex reconfiguration patterns of the brains putative functional modules that control learning can be described parsimoniously by the combined presence of a relatively stiff temporal core that is composed primarily of sensorimotor and visual regions whose connectivity changes little in time and a flexible temporal periphery that is composed primarily of multimodal association regions whose connectivity changes frequently. The separation between temporal core and periphery changes over the course of training and, importantly, is a good predictor of individual differences in learning success. The core of dynamically stiff regions exhibits dense connectivity, which is consistent with notions of core-periphery organization established previously in social networks. Our results demonstrate that core-periphery organization provides an insightful way to understand how putative functional modules are linked. This, in turn, enables the prediction of fundamental human capacities, including the production of complex goal-directed behavior.

Community Structure in Congressional Cosponsorship Networks

Granular materials, such as sand and grains, are ubiquitous. Simulating the 3D dynamic motion of such materials represents a challenging problem in graphics because of their unique physical properties. In this paper we present a simple and effective method for granular material simulation. By incorporating techniques from physical models, our approach describes granular phenomena more faithfully than previous methods. Granular material is represented by a large collection of non-spherical particles which may be in persistent contact. The particles represent discrete elements of the simulated material. One major advantage of using discrete elements is that the topology of particle interaction can evolve freely. As a result, highly dynamic phenomena, such as splashing and avalanches, can be conveniently generated by this meshless approach without sacrificing physical accuracy. We generalize this discrete model to rigid bodies by distributing particles over their surfaces. In this way, two-way coupling between granular materials and rigid bodies is achieved.