Peter Munk

A new method for estimation of velocity vectors

The paper describes a new method for determining the velocity vector of a remotely sensed object using either sound or electromagnetic radiation. The movement of the object is determined from a field with spatial oscillations in both the axial direction of the transducer and in one or two directions transverse to the axial direction. By using a number of pulse emissions, the inter-pulse movement can be estimated and the velocity found from the estimated movement and the time between pulses. The method is based on the principle of using transverse spatial modulation for making the received signal influenced by transverse motion. Such a transverse modulation can be generated by using apodization on individual transducer array elements together with a special focusing scheme. A method for making such a field is presented along with a suitable two-dimensional velocity estimator. An implementation usable in medical ultrasound is described, and simulated results are presented. Simulation results for a flow of 1 m/s in a tube rotated in the image plane at specific angles (0, 15, 35, 55, 75, and 90 degrees) are made and characterized by the estimated mean value, estimated angle, and the standard deviation in the lateral and longitudinal direction. The average performance of the estimates for all angles is: mean velocity 0.99 m/s, longitudinal S.D. 0.015 m/s, and lateral S.D. 0.196 m/s. For flow parallel to the transducer the results are: mean velocity 0.95 m/s, angle 0.10, longitudinal S.D. 0.020 m/s, and lateral S.D. 0.172 m/s.

All roads lead to home: panmixia of European eel in the Sargasso Sea

European eels (Anguilla anguilla) spawn in the remote Sargasso Sea in partial sympatry with American eels (Anguilla rostrata), and juveniles are transported more than 5000 km back to the European and North African coasts. The two species have been regarded as classic textbook examples of panmixia, each comprising a single, randomly mating population. However, several recent studies based on continental samples have found subtle, but significant, genetic differentiation, interpreted as geographical or temporal heterogeneity between samples. Moreover, European and American eels can hybridize, but hybrids have been observed almost exclusively in Iceland, suggesting hybridization in a specific region of the Sargasso Sea and subsequent nonrandom dispersal of larvae. Here, we report the first molecular population genetics study based on analysis of 21 microsatellite loci in larvae of both Atlantic eel species sampled directly in the spawning area, supplemented by analysis of European glass eel samples. Despite a clear East-West gradient in the overlapping distribution of the two species in the Sargasso Sea, we only observed a single putative hybrid, providing evidence against the hypothesis of a wide marine hybrid zone. Analyses of genetic differentiation, isolation by distance, isolation by time and assignment tests provided strong evidence for panmixia in both the Sargasso Sea and across all continental samples of European eel after accounting for the presence of sibs among newly hatched larvae. European eel has declined catastrophically, and our findings call for management of the species as a single unit, necessitating coordinated international conservation efforts.

Computer Phantoms for Simulating Ultrasound B-Mode and CFM Images

Programs capable of simulating ultrasound images have recently been developed. This opens the possibility of evaluating transducers and focusing schemes not only from their point spread function, but also from an imaging point of view. The calculation of the ultrasound field is based on linear acoustics using the Tupholme- Stepanishen method for calculating the spatial impulse response. Any transducer can be simulated by splitting the aperture into rectangular or triangular sub-apertures, and the calculation can include any transducer excitation and apodization. The acoustic settings can be controlled in the entire image through dynamic apodization and focusing. The transmit and receive apertures can be defined independently of each other. Frequency dependent attenuation can also be included in the simulation.

Qualitative assessment of the diet of European eel larvae in the Sargasso Sea resolved by DNA barcoding

European eels (Anguilla anguilla) undertake spawning migrations of more than 5000 km from continental Europe and North Africa to frontal zones in the Sargasso Sea. Subsequently, the larval offspring are advected by large-scale eastward ocean currents towards continental waters. However, the Sargasso Sea is oligotrophic, with generally low plankton biomass, and the feeding biology of eel larvae has so far remained a mystery, hampering understanding of this peculiar life history. DNA barcoding of gut contents of 61 genetically identified A. anguilla larvae caught in the Sargasso Sea showed that even the smallest larvae feed on a striking variety of plankton organisms, and that gelatinous zooplankton is of fundamental dietary importance. Hence, the specific plankton composition seems essential for eel larval feeding and growth, suggesting a linkage between eel survival and regional plankton productivity. These novel insights into the prey of Atlantic eels may furthermore facilitate eel larval rearing in aquaculture, which ultimately may replace the unsustainable use of wild-caught glass eels.

Mapping the spawning grounds of North Sea cod (Gadus morhua) by direct and indirect means

Despite recent evidence for sub-stock structuring, North Sea cod are assessed as a single unit. As a consequence, knowledge of sub-stock trends is poor. In particular, there are no recent evaluations of which spawning grounds are active. Here we report results from the first ichthyoplankton survey to cover the whole North Sea. Also, this survey, conducted in 2004, was the first to make extensive use of DNA-based molecular methods to unambiguously identify early developmental stage cod eggs. We compare the findings from the plankton survey with estimated egg production inferred from the distribution of mature cod in contemporaneous trawl surveys. Results from both approaches were in general agreement and showed hot spots of egg production around the southern and eastern edges of the Dogger Bank, in the German Bight, the Moray Firth and to the east of the Shetlands. These areas broadly coincide with known spawning locations from the period 1940 to 1970. We were, however, unable to directly detect significant numbers of cod eggs at the historic spawning ground off Flamborough (northeast coast of England). The results demonstrate that most of the major spawning grounds of cod in the North Sea are still active but that some localized populations may have been reduced to the point where it is now difficult to detect the presence of eggs in the plankton.

A century of research on the larval distributions of the Atlantic eels: a re-examination of the data

The spawning areas of the Atlantic freshwater eels were discovered about a century ago by the Danish scientist Johannes Schmidt who after years of searching found newly hatched larvae of the European eel, Anguilla anguilla, and the American eel, Anguilla rostrata, in the southern Sargasso Sea. The discovery showed that anguillid eels migrate thousands of kilometers to offshore spawning areas for reproduction, and that their larvae, called leptocephali, are transported equally long distances by ocean currents to their continental recruitment areas. The spawning sites were found to be related to oceanographic conditions several decades later by German and American surveys from 1979 to 1989 and by a Danish survey in 2007 and a German survey in 2011. All these later surveys showed that spawning occurred within a restricted latitudinal range, between temperature fronts within the Subtropical Convergence Zone of the Sargasso Sea. New data and re‐examinations of Schmidts data confirmed his original conclusions about the two species having some overlap in spawning areas. Although there have been additional collections of leptocephali in various parts of the North Atlantic, and both otolith research and transport modelling studies have subsequently been carried out, there is still a range of unresolved questions about the routes of larval transport and durations of migration. This paper reviews the history and basic findings of surveys for anguillid leptocephali in the North Atlantic and analyses a new comprehensive database that includes 22612 A. anguilla and 9634 A. rostrata leptocephali, which provides a detailed view of the spatial and temporal distributions and size of the larvae across the Atlantic basin and in the Mediterranean Sea. The differences in distributions, maximum sizes, and growth rates of the two species of larvae are likely linked to the contrasting migration distances to their recruitment areas on each side of the basin. Anguilla rostrata leptocephali originate from a more western spawning area, grow faster, and metamorphose at smaller sizes of <70 mm than the larvae of A. anguilla, which mostly are spawned further east and can reach sizes of almost 90 mm. The larvae of A. rostrata spread west and northwest from the spawning area as they grow larger, with some being present in the western Caribbean and eastern Gulf of Mexico. Larvae of A. anguilla appear to be able to reach Europe by entering the Gulf Stream system or by being entrained into frontal countercurrents that transport them directly northeastward. The larval duration of A. anguilla is suggested to be quite variable, but gaps in sampling effort prevent firm conclusions. Although knowledge about larval behaviour is lacking, some influences of directional swimming are implicated by the temporal distributions of the largest larvae. Ocean–atmosphere changes have been hypothesized to affect the survival of the larvae and cause reduced recruitment, so even after about a century following the discovery of their spawning areas, mysteries still remain about the marine life histories of the Atlantic eels.

Vertical distribution of pre-settled sandeel (Ammodytes marinus) in the North Sea in relation to size and environmental variables

Vertical distribution patterns of larval and juvenile sandeels were investigated at four locations in the North Sea. Sandeels between 6 and 65 mm were found to depths of 80 m, with vertical distributions dependent on both length and environmental factors. At one location with a stratified water column, the highest densities were found during the day in midwater where food concentration was also highest. In areas without marked vertical hydrographic gradients, larvae were relatively more abundant in surface waters during the day. At all locations, larvae of all sizes were generally more homogeneously distributed in the water column during night than during day. The extent of vertical migration, as measured by the standard deviation of the mean depth, increased generally with length. Gear avoidance was evident for larvae R20 mm. Catch efficiency generally depended on both length class and surface light intensity. A simulated drift pattern of larvae, based on ADCP current measurements from two locations, predicts that the horizontal drift trajectory would only be affected slightly by the vertical positioning of the larvae in the water column during the time of sampling. The implication of vertical migrations for dispersal of larvae away from the spawning grounds is discussed.

Abundance of Broad Bacterial Taxa in the Sargasso Sea Explained by Environmental Conditions but Not Water Mass

ABSTRACT To explore the potential linkage between distribution of marine bacterioplankton groups, environmental conditions, and water mass, we investigated the factors determining the abundance of bacterial taxa across the hydrographically complex Subtropical Convergence Zone in the Sargasso Sea. Based on information from 16S rRNA gene clone libraries from various locations and two depths, abundances of the predominant taxa (eubacteria, Archaea, Alphaproteobacteria, Gammaproteobacteria, Bacteroidetes, and the Roseobacter, SAR11, and SAR86 clades) were quantified by real-time PCR. In addition, the abundances of Synechococcus, Prochlorococcus, and picoalgae were determined by flow cytometry. Linear multiple-regression models determining the relative effects of eight environmental variables and of water mass explained 35 to 86% of the variation in abundance of the quantified taxa, even though only one to three variables were significantly related to any particular taxons abundance. Most of the variation in abundance was explained by depth and chlorophyll a. The predominant phototrophs, Prochlorococcus and picoalgae, were negatively correlated with phosphate, whereas eubacteria, heterotrophic bacteria, and SAR86 were negatively correlated with nitrite. Water mass showed limited importance for explaining the abundance of the taxonomical groups (significant only for Roseobacter, explaining 14% of the variation). The results suggest the potential for predicting the abundance of broad bacterioplankton groups throughout the Sargasso Sea using only a few environmental parameters.

Effects of salinity and sea salt type on egg activation, fertilization, buoyancy and early embryology of European eel, Anguilla anguilla

Improper activation and swelling of in vitro produced eggs of European eel, Anguilla anguilla, has been shown to negatively affect embryonic development and hatching. We investigated this phenomenon by examining the effects of salinity and sea salt type on egg dimensions, cell cleavage patterns and egg buoyancy. Egg diameter after activation, using natural seawater adjusted to different salinities, varied among female eels, but no consistent pattern emerged. Activation salinities between 30-40 practical salinity unit (psu) produced higher quality eggs and generally larger egg diameters. Chorion diameters reached maximal values of 1642 ± 8 μm at 35 psu. A positive relationship was found between egg neutral buoyancy and activation salinity. Nine salt types were investigated as activation and incubation media. Five of these types induced a substantial perivitelline space (PVS), leading to large egg sizes, while the remaining four salt types resulted in smaller eggs. All salt types except NaCl treatments led to high fertilization rates and had no effect on fertilization success as well as egg neutral buoyancies at 7 h post-fertilization. The study points to the importance of considering ionic composition of the media when rearing fish eggs and further studies are encouraged.

Recent advances in blood flow vector velocity imaging

A number of methods for ultrasound vector velocity imaging are presented in the paper. The transverse oscillation (TO) method can estimate the velocity transverse to the ultrasound beam by introducing a lateral oscillation in the received ultrasound field. The approach has been thoroughly investigated using both simulations, flow rig measurements, and in-vivo validation against MR scans. The TO method obtains a relative accuracy of 10% for a fully transverse flow in both simulations and flow rig experiments. In-vivo studies performed on 11 healthy volunteers comparing the TO method with magnetic resonance phase contrast angiography (MRA) revealed a correlation between the stroke volume estimated by TO and MRA of 0.91 (p<;0.01) with an equation for the line of regression given as: MRA = 1.1 · TO-0.4 ml. Several clinical examples of complex flow in e.g. bifurcations and around valves have been acquired using a commercial implementation of the method (BK Medical ProFocus Ultraview scanner). A range of other methods are also presented. This includes synthetic aperture imaging using either spherical or plane waves with velocity estimation performed with directional beamforming or speckle tracking. The key advantages of these techniques are very fast imaging that can attain an order of magnitude higher precision than conventional methods. SA flow imaging was implemented on the experimental scanner RASMUS using an 8-emission spherical emission sequence and reception of 64 channels on a BK Medical 8804 transducer. This resulted in a relative standard deviation of 1.2% for a fully transverse flow. Plane wave imaging was also implemented on the RASMUS scanner and a 100 Hz frame rate was attained. Several vector velocity image sequences of complex flow were acquired, which demonstrates the benefits of fast vector flow imaging. A method for extending the 2D TO method to 3D vector velocity estimation is presented and the implications for future vector velocity imaging is indicated.