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Dive into the research topics where Peter Soba is active.

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Featured researches published by Peter Soba.


The EMBO Journal | 2005

Homo‐ and heterodimerization of APP family members promotes intercellular adhesion

Peter Soba; Simone Eggert; Katja Wagner; Hanswalter Zentgraf; Katjuscha Siehl; Sylvia Kreger; Alexander Löwer; Andreas Langer; Gunter Merdes; Renato Paro; Colin L. Masters; Ulrike Müller; Stefan Kins; Konrad Beyreuther

The amyloid precursor protein (APP) plays a central role in Alzheimers disease, but its physiological function and that of its mammalian paralogs, the amyloid precursor‐like proteins 1 and 2 (APLPs), is still poorly understood. APP has been proposed to form dimers, a process that could promote cell adhesion via trans‐dimerization. We investigated the dimerization and cell adhesion properties of APP/APLPs and provide evidence that all three paralogs are capable of forming homo‐ and heterocomplexes. Moreover, we show that trans‐interaction of APP family proteins promotes cell–cell adhesion in a homo‐ and heterotypic fashion and that endogenous APLP2 is required for cell–cell adhesion in mouse embryonic fibroblasts. We further demonstrate interaction of all the three APP family members in mouse brain, genetic interdependence, and molecular interaction of APP and APLPs in synaptically enriched membrane compartments. Together, our results provide evidence that homo‐ and heterocomplexes of APP/APLPs promote trans‐cellular adhesion in vivo.


Neuron | 2007

Drosophila sensory neurons require Dscam for dendritic self-avoidance and proper dendritic field organization

Peter Soba; Sijun Zhu; Kazuo Emoto; Susan Younger; Shun-Jen Yang; Hung-Hsiang Yu; Tzumin Lee; Lily Yeh Jan; Yuh Nung Jan

A neurons dendrites typically do not cross one another. This intrinsic self-avoidance mechanism ensures unambiguous processing of sensory or synaptic inputs. Moreover, some neurons respect the territory of others of the same type, a phenomenon known as tiling. Different types of neurons, however, often have overlapping dendritic fields. We found that Downs syndrome Cell Adhesion Molecule (Dscam) is required for dendritic self-avoidance of all four classes of Drosophila dendritic arborization (da) neurons. However, neighboring mutant class IV da neurons still exhibited tiling, suggesting that self-avoidance and tiling differ in their recognition and repulsion mechanisms. Introducing 1 of the 38,016 Dscam isoforms to da neurons in Dscam mutants was sufficient to significantly restore self-avoidance. Remarkably, expression of a common Dscam isoform in da neurons of different classes prevented their dendrites from sharing the same territory, suggesting that coexistence of dendritic fields of different neuronal classes requires divergent expression of Dscam isoforms.


Neuron | 2012

Integrins Regulate Repulsion-Mediated Dendritic Patterning of Drosophila Sensory Neurons by Restricting Dendrites in a 2D Space

Chun Han; Denan Wang; Peter Soba; Sijun Zhu; Xinhua Lin; Lily Yeh Jan; Yuh Nung Jan

Dendrites of the same neuron usually avoid each other. Some neurons also repel similar neurons through dendrite-dendrite interaction to tile the receptive field. Nonoverlapping coverage based on such contact-dependent repulsion requires dendrites to compete for limited space. Here we show that Drosophila class IV dendritic arborization (da) neurons, which tile the larval body wall, grow their dendrites mainly in a 2D space on the extracellular matrix (ECM) secreted by the epidermis. Removing neuronal integrins or blocking epidermal laminin production causes dendrites to grow into the epidermis, suggesting that integrin-laminin interaction attaches dendrites to the ECM. We further show that some of the previously identified tiling mutants fail to confine dendrites in a 2D plane. Expansion of these mutant dendrites in three dimensions results in overlap of dendritic fields. Moreover, overexpression of integrins in these mutant neurons effectively reduces dendritic crossing and restores tiling, revealing an additional mechanism for tiling.


The EMBO Journal | 2004

Interference of human and Drosophila APP and APP-like proteins with PNS development in Drosophila

Gunter Merdes; Peter Soba; Alexander Loewer; Michaela V. Bilic; Konrad Beyreuther; Renato Paro

The view that only the production and deposition of Aβ plays a decisive role in Alzheimers disease has been challenged by recent evidence from different model systems, which attribute numerous functions to the amyloid precursor protein (APP). To investigate the potential cellular functions of APP and its paralogs, we use transgenic Drosophila as a model. Upon overexpression of the APP‐family members, transformations of cell fates during the development of the peripheral nervous system were observed. Genetic analysis showed that APP, APLP1 and APLP2 induce Notch gain‐of‐function phenotypes, identified Numb as a potential target and provided evidence for a direct involvement of Disabled and Neurotactin in the induction of the phenotypes. The severity of the induced phenotypes not only depended on the dosage and the particular APP‐family member but also on particular domains of the molecules. Studies with Drosophila APPL confirmed the results obtained with human proteins and the analysis of flies mutant for the appl gene further supports an involvement of APP‐family members in neuronal development and a crosstalk between the APP family and Notch.


Journal of Biological Chemistry | 2006

PAT1a Modulates Intracellular Transport and Processing of Amyloid Precursor Protein (APP), APLP1, and APLP2

Yung-Hui Kuan; Tomas Gruebl; Peter Soba; Simone Eggert; Iva Nesic; Simone Back; Joachim Kirsch; Konrad Beyreuther; Stefan Kins

Understanding the intracellular transport of the β-amyloid precursor protein (APP) is a major key to elucidate the regulation of APP processing and thus β-amyloid peptide generation in Alzheimer disease pathogenesis. APP and its two paralogues, APLP1 and APLP2 (APLPs), are processed in a very similar manner by the same protease activities. A putative candidate involved in APP transport is protein interacting with APP tail 1 (PAT1), which was reported to interact with the APP intracellular domain. We show that PAT1a, which is 99.0% identical to PAT1, binds to APP, APLP1, and APLP2 in vivo and describe their co-localization in trans-Golgi network vesicles or endosomes in primary neurons. We further demonstrate a direct interaction of PAT1a with the basolateral sorting signal of APP/APLPs. Moreover, we provide evidence for a direct role of PAT1a in APP/APLP transport as overexpression or RNA interference-mediated knockdown of PAT1a modulates APP/APLPs levels at the cell surface. Finally, we show that PAT1a promotes APP/APLPs processing, resulting in increased secretion ofβ-amyloid peptide. Taken together, our data establish PAT1a as a functional link between APP/APLPs transport and their processing.


European Journal of Neuroscience | 2007

Axonal accumulation of synaptic markers in APP transgenic Drosophila depends on the NPTY motif and is paralleled by defects in synaptic plasticity.

Patricia Rusu; Anna M. Jansen; Peter Soba; Joachim Kirsch; Alexander Löwer; Gunter Merdes; Yung-Hui Kuan; Anita Jung; Konrad Beyreuther; Ole Kjaerulff; Stefan Kins

Alzheimers disease (AD) is characterized by neurofibrillary tangles and extracellular plaques, which consist mainly of β‐amyloid derived from the β‐amyloid precursor protein (APP). An additional feature of AD is axonopathy, which might contribute to impairment of cognitive functions. Specifically, axonal transport defects have been reported in AD animal models, including mice and flies that overexpress APP and tau. Here we demonstrate that the APP‐induced traffic jam of vesicles in peripheral nerves of Drosophila melanogaster larvae depends on the four residues NPTY motif in the APP intracellular domain. Furthermore, heterologous expression of Fe65 and JIP1b, scaffolding proteins interacting with the NPTY motif, also perturb axonal transport. Together, these data indicate that JIP1b or Fe65 may be involved in the APP‐induced axonal transport defect. Moreover, we have characterized neurotransmission at the neuromuscular junction in transgenic larvae that express human APP. Consistent with the observation that these larvae do not show any obvious movement deficits, we found no changes in basal synaptic transmission. However, short‐term synaptic plasticity was affected by overexpression of APP. Together, our results show that overexpression of APP induces partial stalling of axonal transport vesicles, paralleled by abnormalities in synaptic plasticity, which may provide a functional link to the deterioration of cognitive functions observed in AD.


EMBO Reports | 2004

Cell‐type‐specific processing of the amyloid precursor protein by Presenilin during Drosophila development

Alexander Loewer; Peter Soba; Konrad Beyreuther; Renato Paro; Gunter Merdes

The cleavage of proteins within their transmembrane domain by Presenilin (PS) has an important role in different signalling pathways and in Alzheimers disease. Nevertheless, not much is known about the regulation of PS activity. It has been suggested that substrate recognition by the PS complex depends only on the size of the extracellular domain independent of the amino‐acid sequence and that PS activity is constitutive in all cells that express the minimal components of the complex. We report here the development of an in vivo reporter system that allowed us to analyse the processing of human amyloid precursor protein (APP) and the Notch receptor tissue specifically during Drosophila development in the living organism. Using this system, we demonstrate differences between APP and Notch processing and show that PS‐mediated cleavage of APP can be regulated in different cell types independent of the size of the extracellular domain.


eLife | 2015

The Ret receptor regulates sensory neuron dendrite growth and integrin mediated adhesion

Peter Soba; Chun Han; Yi Zheng; Daniel Perea; Irene Miguel-Aliaga; Lily Yeh Jan; Yuh Nung Jan

Neurons develop highly stereotyped receptive fields by coordinated growth of their dendrites. Although cell surface cues play a major role in this process, few dendrite specific signals have been identified to date. We conducted an in vivo RNAi screen in Drosophila class IV dendritic arborization (C4da) neurons and identified the conserved Ret receptor, known to play a role in axon guidance, as an important regulator of dendrite development. The loss of Ret results in severe dendrite defects due to loss of extracellular matrix adhesion, thus impairing growth within a 2D plane. We provide evidence that Ret interacts with integrins to regulate dendrite adhesion via rac1. In addition, Ret is required for dendrite stability and normal F-actin distribution suggesting it has an essential role in dendrite maintenance. We propose novel functions for Ret as a regulator in dendrite patterning and adhesion distinct from its role in axon guidance. DOI: http://dx.doi.org/10.7554/eLife.05491.001


Development | 2014

The microRNA bantam regulates a developmental transition in epithelial cells that restricts sensory dendrite growth

Nan Jiang; Peter Soba; Edward Parker; Charles C. Kim; Jay Z. Parrish

As animals grow, many early born structures grow by cell expansion rather than cell addition; thus growth of distinct structures must be coordinated to maintain proportionality. This phenomenon is particularly widespread in the nervous system, with dendrite arbors of many neurons expanding in concert with their substrate to sustain connectivity and maintain receptive field coverage as animals grow. After rapidly growing to establish body wall coverage, dendrites of Drosophila class IV dendrite arborization (C4da) neurons grow synchronously with their substrate, the body wall epithelium, providing a system to study how proportionality is maintained during animal growth. Here, we show that the microRNA bantam (ban) ensures coordinated growth of C4da dendrites and the epithelium through regulation of epithelial endoreplication, a modified cell cycle that entails genome amplification without cell division. In Drosophila larvae, epithelial endoreplication leads to progressive changes in dendrite-extracellular matrix (ECM) and dendrite-epithelium contacts, coupling dendrite/substrate expansion and restricting dendrite growth beyond established boundaries. Moreover, changes in epithelial expression of cell adhesion molecules, including the beta-integrin myospheroid (mys), accompany this developmental transition. Finally, endoreplication and the accompanying changes in epithelial mys expression are required to constrain late-stage dendrite growth and structural plasticity. Hence, modulating epithelium-ECM attachment probably influences substrate permissivity for dendrite growth and contributes to the dendrite-substrate coupling that ensures proportional expansion of the two cell types.


Frontiers in Cellular Neuroscience | 2014

Shedding of APP limits its synaptogenic activity and cell adhesion properties

Ronny Stahl; Sandra Schilling; Peter Soba; Carsten Rupp; Tobias Hartmann; Katja Wagner; Gunter Merdes; Simone Eggert; Stefan Kins

The amyloid precursor protein (APP) plays a central role in Alzheimer’s disease (AD) and has essential synapse promoting functions. Synaptogenic activity as well as cell adhesion properties of APP presumably depend on trans-cellular dimerization via its extracellular domain. Since neuronal APP is extensively processed by secretases, it raises the question if APP shedding affects its cell adhesion and synaptogenic properties. We show that inhibition of APP shedding using cleavage deficient forms of APP or a dominant negative α-secretase strongly enhanced its cell adhesion and synaptogenic activity suggesting that synapse promoting function of APP is tightly regulated by α-secretase mediated processing, similar to other trans-cellular synaptic adhesion molecules.

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Stefan Kins

Kaiserslautern University of Technology

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Lily Yeh Jan

University of California

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Simone Eggert

Kaiserslautern University of Technology

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Yuh Nung Jan

University of California

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