Petra Berenbrink
Simon Fraser University
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Publication
Featured researches published by Petra Berenbrink.
research in computational molecular biology | 2006
Fereydoun Hormozdiari; Petra Berenbrink; Nataša Pržulj; S. Cenk Sahinalp
The (asymptotic) degree distributions of the best-known “scale-free” network models are all similar and are independent of the seed graph used; hence, it has been tempting to assume that networks generated by these models are generally similar. In this paper, we observe that several key topological features of such networks depend heavily on the specific model and the seed graph used. Furthermore, we show that starting with the “right” seed graph (typically a dense subgraph of the protein–protein interaction network analyzed), the duplication model captures many topological features of publicly available protein–protein interaction networks very well.
international conference on cluster computing | 2001
Baruch Awerbuch; Petra Berenbrink; André Brinkmann; Christian Scheideler
In this paper we consider the problem of delivering dynamically changing input streams in dynamically changing networks where both the topology and the input streams can change in an unpredictable way. In particular, we present two simple distributed balancing algorithms (one for packet injections and one for flow injections) and show that for the case of a single receiver these algorithms will always ensure that the number of packets or flow in the system is bounded at any time step, even for an injection process that completely saturates the capacities of the available edges and even if the network topology changes in a completely unpredictable way. We also show that the maximum number of packets or flow that can be in the system at any time is essentially best possible by providing a lower bound that holds for any online algorithm, whether distributed or not. Interestingly, our balancing algorithms do not behave well in a completely adversarial setting. We show that also in the other extreme of a static network and a static injection pattern the algorithms will converge to a point in which they achieve an average routing time that is close to the best possible average routing time that can be achieved by any strategy. This demonstrates that there are simple algorithms that can be efficient for very different scenarios.
SIAM Journal on Computing | 2006
Petra Berenbrink; Artur Czumaj; Angelika Steger; Berthold Vöcking
We investigate balls-into-bins processes allocating m balls into n bins based on the multiple-choice paradigm. In the classical single-choice variant each ball is placed into a bin selected uniformly at random. In a multiple-choice process each ball can be placed into one out of
SIAM Journal on Computing | 2003
Petra Berenbrink; Tom Friedetzky; Leslie Ann Goldberg
d \ge 2
international conference on cluster computing | 2001
Petra Berenbrink; Thomas Friedetzky; Leslie Ann Goldberg
randomly selected bins. It is known that in many scenarios having more than one choice for each ball can improve the load balance significantly. Formal analyses of this phenomenon prior to this work considered mostly the lightly loaded case, that is, when
Algorithmica | 2012
Petra Berenbrink; Tom Friedetzky; Iman Hajirasouliha; Zengjian Hu
m \approx n
euromicro workshop on parallel and distributed processing | 2001
Petra Berenbrink; André Brinkmann; Christian Scheideler
. In this paper we present the first tight analysis in the heavily loaded case, that is, when
acm symposium on parallel algorithms and architectures | 2013
Hoda Akbari; Petra Berenbrink
m \gg n
principles of distributed computing | 2012
Clemens P. J. Adolphs; Petra Berenbrink
rather than
acm symposium on parallel algorithms and architectures | 2013
Petra Berenbrink; Kamyar Khodamoradi; Thomas Sauerwald; Alexandre Stauffer
m \approx n