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Dive into the research topics where Petra Urbanová is active.

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Featured researches published by Petra Urbanová.


Forensic Science International | 2015

Testing photogrammetry-based techniques for three-dimensional surface documentation in forensic pathology

Petra Urbanová; Petr Hejna; Mikoláš Jurda

Three-dimensional surface technologies particularly close range photogrammetry and optical surface scanning have recently advanced into affordable, flexible and accurate techniques. Forensic postmortem investigation as performed on a daily basis, however, has not yet fully benefited from their potentials. In the present paper, we tested two approaches to 3D external body documentation - digital camera-based photogrammetry combined with commercial Agisoft PhotoScan(®) software and stereophotogrammetry-based Vectra H1(®), a portable handheld surface scanner. In order to conduct the study three human subjects were selected, a living person, a 25-year-old female, and two forensic cases admitted for postmortem examination at the Department of Forensic Medicine, Hradec Králové, Czech Republic (both 63-year-old males), one dead to traumatic, self-inflicted, injuries (suicide by hanging), the other diagnosed with the heart failure. All three cases were photographed in 360° manner with a Nikon 7000 digital camera and simultaneously documented with the handheld scanner. In addition to having recorded the pre-autopsy phase of the forensic cases, both techniques were employed in various stages of autopsy. The sets of collected digital images (approximately 100 per case) were further processed to generate point clouds and 3D meshes. Final 3D models (a pair per individual) were counted for numbers of points and polygons, then assessed visually and compared quantitatively using ICP alignment algorithm and a cloud point comparison technique based on closest point to point distances. Both techniques were proven to be easy to handle and equally laborious. While collecting the images at autopsy took around 20min, the post-processing was much more time-demanding and required up to 10h of computation time. Moreover, for the full-body scanning the post-processing of the handheld scanner required rather time-consuming manual image alignment. In all instances the applied approaches produced high-resolution photorealistic, real sized or easy to calibrate 3D surface models. Both methods equally failed when the scanned body surface was covered with body hair or reflective moist areas. Still, it can be concluded that single camera close range photogrammetry and optical surface scanning using Vectra H1 scanner represent relatively low-cost solutions which were shown to be beneficial for postmortem body documentation in forensic pathology.


Forensic Science International | 2014

Sex assessment using clavicle measurements: Inter- and intra-population comparisons

Miroslav Králík; Petra Urbanová; Martina Wagenknechtová

We studied sexual dimorphism of the human clavicle in order to describe size variation and create population-specific discriminant tools for morphometric sex assessment. The studied sample consisted of 200 skeletons of adult individuals obtained from the University of Athens Human Skeletal Reference Collection, Athens, Greece. The specimens were well-documented and represented a modern population from cemeteries in the Athens area. Six dimensions typically used for clavicle measurements were recorded. For sexing clavicles, we used both traditional univariate (limiting, demarking and sectioning points) and multivariate discriminant function analysis. The accuracy of the best five classification equations/functions ranged from 91.62% to 92.55% of correctly assigned specimens. By testing new and previously published sexing functions (Greeks, Polynesians, Guatemalans) on four available population samples (English, Indians from Amritsar, Indians from Varanasi, and data from the present study) we found that, for some combinations of tested and reference samples, the accuracy of the sex assessment may decrease even below the probability given by random sex assignment. Therefore, measurements of the clavicle should not be used for sex assessment of individual cases (both forensic and archeological) whose population origin is unknown. However, significant metric differences were also recorded among three different Greek samples (i.e. within a population). As a consequence, application of a sexing method generated from one Greek sample and applied to another Greek sample led to negligible reduction in the success of sex assessment, despite general similarities in ethnic origin (Greeks), generation structure and presumed social background of the samples. Therefore, we believe that future studies should focus on understanding the nature of the differences among within-population reference samples.


Legal Medicine | 2014

Testing the reliability of software tools in sex and ancestry estimation in a multi-ancestral Brazilian sample

Petra Urbanová; Ann H. Ross; Mikoláš Jurda; Maria-Ines Nogueira

In the framework of forensic anthropology osteometric techniques are generally preferred over visual examinations due to a higher level of reproducibility and repeatability; qualities that are crucial within a legal context. The use of osteometric methods has been further reinforced by incorporating statistically-based algorithms and large reference samples in a variety of user-friendly software applications. However, the continued increase in admixture of human populations have made the use of osteometric methods for estimation of ancestry much more complex, which confounds one of major requirements of ancestry assessment - intra-population homogeneity. The present paper tests the accuracy of ancestry and sex assessment using four identification software tools, specifically FORDISC 2.0, FORDISC 3.1.293, COLIPR 1.5.2 and 3D-ID 1.0. Software accuracy was tested in a sample of 174 documented human crania of Brazilian origin composed of different ancestral groups (i.e., European Brazilians, Afro-Brazilians, and Japanese Brazilians and of admixed ancestry). The results show that regardless of the software algorithm employed and composition of the reference database, all methods were able to allocate approximately 50% of Brazilian specimens to an appropriate major reference group. Of the three ancestral groups, Afro-Brazilians were especially prone to misclassification. Japanese Brazilians, by contrast, were shown to be relatively easily recognizable as being of Asian descent but at the same time showed a strong affinity towards Hispanic crania, in particularly when the classification based on FDB was carried out in FORDISC. For crania of admixed origin all of the algorithms showed a considerable higher rate of inconsistency with a tendency for misclassification into Asian and American Hispanic groups. Sex assessments revealed an overall modest to poor reliability (60-71% of correctly classified specimens) using the tested software programs with unbalanced individual rates for males and females. The highest and atypically balanced rate of classification for sex assessment was provided by COLIPR software, which reached 78% of correctly assessed crania.


Homo-journal of Comparative Human Biology | 2013

The morphology of human hyoid bone in relation to sex, age and body proportions

Petra Urbanová; Petr Hejna; Lenka Zátopková; Miroslav Šafr

Morphological aspects of the human hyoid bone are, like many other skeletal elements in human body, greatly affected by individuals sex, age and body proportions. Still, the known sex-dependent bimodality of a number of body size characteristics overshadows the true within-group patterns. Given the ambiguity of the causal effects of age, sex and body size upon hyoid morphology the present study puts the relationship between shape of human hyoid bone and body proportions (height and weight) under scrutiny of a morphological study. Using 211 hyoid bones and landmark-based methods of geometric morphometrics, it was shown that the size of hyoid bones correlated positively with measured body dimensions but showed no correlation if the individuals sex was controlled for. For shape variables, our results revealed that hyoid morphology is clearly related to body size as expressed in terms of the height and weight. Yet, the hyoid shape was shown to result primarily from the sex-related bimodal distribution of studied body size descriptors which, in the case of the height-dependent model, exhibited opposite trends for males and females. Apart from the global hyoid shape given by spatial arrangements of the greater horns, body size dependency was translated into size and position of the hyoid body. None of the body size characters had any impact on hyoid asymmetry. Ultimately, sexually dimorphic variation was revealed for age-dependent changes in both size and shape of hyoid bones as male hyoids tend to be more susceptible to modifications with age than female bones.


IEEE Transactions on Information Forensics and Security | 2016

Two-Dimensional Wavelet Analysis of Supraorbital Margins of the Human Skull for Characterizing Sexual Dimorphism

Sílvia Cristina Dias Pinto; Petra Urbanová; Roberto M. Cesar

The accurate determination of the sex of human skeletal remains is a critical challenge in forensic pathology and skeletal anthropology. The pelvis and the skull are the most commonly used skeletal sites for determining the sex of skeletons. In the skull, the supraorbital region, which includes the supraorbital margin, is considered a specific sexually dimorphic trait. In the traditional approach, sex is determined through visual and tactile assessment. This paper introduces a methodology for the objective quantification of sexually dimorphic features using wavelet transform, which is a multiscale mathematical tool that allows for the measurement of shape variations that are hidden at different scales of resolution. The method was successfully applied for the sex determination of a pilot sample of 3D meshes-digital records of supraorbital morphology. This information can be used by experts to improve the accuracy of biologic profile assessment of a human skeleton, and to describe the geographic and temporal variations within and among populations.


Proceedings of the 1st International Symposium | 2011

Variation of the Orbital Rim Using Elliptic Fourier Analysis

Petra Urbanová

The shape of the orbital rim is one of the essential craniofacial features that play a crucial role in face perception, recognition, or personal identification. As a consequence, it continues to attract a large variety of researchers, e.g., skeletal or forensic anthropologists, anatomists, physicians, psychologists etc. Despite being a focus since the rise of traditional anthropometrics, the 3-D nature of the orbital rim has not been satisfactorily quantified. This paper presents an approach to numerically describe the withinand among-population shape variation of the orbital rim, its curviness and spatial orientation using elliptic Fourier analysis. The sample consisted of 336 crania from present-day skeletal collections (Czech Republic, Portugal). For each specimen, a pair of orbital outlines was recorded using the MicroScribe G2X, a portable digitizer. Regardless of the body side, the trace line started and ended at dacryon located on the inner margin of the orbital rim. Cartesian coordinates of three fixed points defining a 3-D Frankfurt Horizontal plane were also acquired. In order to align for spatial orientation of the orbits, each pair was rotated to the Frankfurt Horizontal. The outlines were divided into 150 evenly distributed points and subsequently processed using elliptic Fourier analysis with 20 harmonics. The results showed that the specimen’s population affinity, sex, age and body size are factors responsible for the shape of the orbital rim. In contrast to the generally assumed pattern of sex differences, the shape of frontallyviewed orbits failed to act as a good sex predictor. Sex-related differences, as described by 3D shape analysis, were linked mostly to a specific “curviness” and to spatial arrangement of orbits within the craniofacial skeleton. Whereas the male orbital outline is characteristically curved and placed in the frontal plane, the female outline is flat and diverged. The results demonstrate that elliptic Fourier analysis is a powerful methodological tool that can provide new insights into the structural relationships within biological objects.


International Journal of Morphology | 2014

The asymmetry and modularity of the hyoid bone

Petra Urbanová; Petr Hejna; Lenka Zátopková; Miroslav Šafr

Morphological variation is a result of interplay among multiple intervening factors. For hyoid bones, the shape and size differences have been scarcely covered in the literature and in majority limited to studies of sexual dimorphism or age dependency. To our knowledge, the human hyoid bone, in complete opposite to other cranial bones, has not been fully utilized to address developmental questions in terms of asymmetry or modularity. In the present paper, we used landmark-based methods of geometric morphometrics and multivariate statistical approach to study human hyoid morphology represented by the hyoid body and greater horns in a sample of 211 fused and non-fused bones. Within a sample variation analysis, we showed that the hyoid bone is, by nature, asymmetrical bone which exhibit both directional and fluctuating types of asymmetry and is composed of well-integrated anatomical elements for which the biomechanical load of attached muscles is the most determining factor of variation. Yet, the covariance and evidence of unequal amount of fluctuating asymmetry among modules suggests a certain degree of independence during early stages of development.


Forensic Science International | 2017

Using drone-mounted cameras for on-site body documentation: 3D mapping and active survey

Petra Urbanová; Mikoláš Jurda; Tomáš Vojtíšek; Jan Krajsa

Recent advances in unmanned aerial technology have substantially lowered the cost associated with aerial imagery. As a result, forensic practitioners are today presented with easy low-cost access to aerial photographs at remote locations. The present paper aims to explore boundaries in which the low-end drone technology can operate as professional crime scene equipment, and to test the prospects of aerial 3D modeling in the forensic context. The study was based on recent forensic cases of falls from height admitted for postmortem examinations. Three mock outdoor forensic scenes featuring a dummy, skeletal remains and artificial blood were constructed at an abandoned quarry and subsequently documented using a commercial DJI Phantom 2 drone equipped with a GoPro HERO 4 digital camera. In two of the experiments, the purpose was to conduct aerial and ground-view photography and to process the acquired images with a photogrammetry protocol (using Agisoft PhotoScan® 1.2.6) in order to generate 3D textured models. The third experiment tested the employment of drone-based video recordings in mapping scattered body parts. The results show that drone-based aerial photography is capable of producing high-quality images, which are appropriate for building accurate large-scale 3D models of a forensic scene. If, however, high-resolution top-down three-dimensional scene documentation featuring details on a corpse or other physical evidence is required, we recommend building a multi-resolution model by processing aerial and ground-view imagery separately. The video survey showed that using an overview recording for seeking out scattered body parts was efficient. In contrast, the less easy-to-spot evidence, such as bloodstains, was detected only after having been marked properly with crime scene equipment.


American Journal of Forensic Medicine and Pathology | 2015

Agenesis of the Superior Cornua of the Thyroid Cartilage: A Rare Variant of Medicolegal Importance

Petr Hejna; Martin Janík; Petra Urbanová

AbstractIt is important that forensic pathologists are familiar with variations in the size and shape of the laryngohyoid complex when interpreting injuries and pathology of the head and neck region. Accurate postmortem examination of the laryngohyoid structures may be difficult if anatomical variation in these structures is present. Agenesis of the upper horns of the thyroid cartilage has medicolegal significance because it may be mistaken for a fracture or other trauma-related conditions. We present 3 cases with different forms of agenesis of the superior cornu of the thyroid cartilage, namely, right unilateral, left unilateral, and bilateral agenesis.


Artificial Intelligence | 2014

Distal Part of the Human Hand: Study of Form Variability and Sexual Dimorphism Using Geometric Morphometrics

Miroslav Králík; Stanislav Katina; Petra Urbanová

Traditionally, the human hand has been analyzed by measuring and comparing individual segments (fingers, phalanges, metacarpals) without considering their mutual spatial relationships. The present study aimed to analyze intra-population variability of the human hand form in the region of fingers as whole with special focus given to sexual dimorphism and the association between shape and size. Right hands of 99 females and 70 males, mostly college students, were scanned with a document scanner in standardized position from the palmar side. For each image 2-D coordinates of 16 landmarks were recorded and variability between configurations of landmarks were studied using geometric morphometrics. To understand patterns of variability, shape spaces were decomposed into affine and non-affine subspaces and further studied separately. The prevalence of the total variability was associated with affine shape change identical for the whole studied region of the hand. Its major portion was represented by shearing in proximodistal direction and to a lesser extent by straining in the relative hand width. The strain also strongly correlated with size of the hand. Intersexual differences were represented by affine change in which the proximodistal shearing was inextricably tied with the differences in relative hand width. Local non-affine sex differences were found in specific phalanges and might be associated with differences in finger length ratios. We presume that separating global and local sexually dimorphic features of the hand might shed light on the origin/onset of the dimorphism during early ontogeny – the more local the feature, the later differentiated, and thus influenced by different ontogenetic factors than global features.

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Petr Hejna

Charles University in Prague

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Ann H. Ross

North Carolina State University

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