Pierre Pepin

From Sea to Sea: Canada's Three Oceans of Biodiversity

Evaluating and understanding biodiversity in marine ecosystems are both necessary and challenging for conservation. This paper compiles and summarizes current knowledge of the diversity of marine taxa in Canadas three oceans while recognizing that this compilation is incomplete and will change in the future. That Canada has the longest coastline in the world and incorporates distinctly different biogeographic provinces and ecoregions (e.g., temperate through ice-covered areas) constrains this analysis. The taxonomic groups presented here include microbes, phytoplankton, macroalgae, zooplankton, benthic infauna, fishes, and marine mammals. The minimum number of species or taxa compiled here is 15,988 for the three Canadian oceans. However, this number clearly underestimates in several ways the total number of taxa present. First, there are significant gaps in the published literature. Second, the diversity of many habitats has not been compiled for all taxonomic groups (e.g., intertidal rocky shores, deep sea), and data compilations are based on short-term, directed research programs or longer-term monitoring activities with limited spatial resolution. Third, the biodiversity of large organisms is well known, but this is not true of smaller organisms. Finally, the greatest constraint on this summary is the willingness and capacity of those who collected the data to make it available to those interested in biodiversity meta-analyses. Confirmation of identities and intercomparison of studies are also constrained by the disturbing rate of decline in the number of taxonomists and systematists specializing on marine taxa in Canada. This decline is mostly the result of retirements of current specialists and to a lack of training and employment opportunities for new ones. Considering the difficulties encountered in compiling an overview of biogeographic data and the diversity of species or taxa in Canadas three oceans, this synthesis is intended to serve as a biodiversity baseline for a new program on marine biodiversity, the Canadian Healthy Ocean Network. A major effort needs to be undertaken to establish a complete baseline of Canadian marine biodiversity of all taxonomic groups, especially if we are to understand and conserve this part of Canadas natural heritage.

Reconstruction of environmental histories to investigate patterns of larval radiated shanny ( Ulvaria subbifurcata ) growth and selective survival in a large bay of Newfoundland

We used otolith microstructure analysis to reconstruct the growth histories of larval radiated shanny ( Ulvaria subbifurcata ) collected over a 2-week period in Trinity Bay, Newfoundland. A dynamic 3-dimensional, eddy-resolving circulation model of the region provided larval drift patterns, which were combined with measurements of temperature and zooplankton abundance to assess the environmental history of the larvae. The abundance of juvenile and adult capelin ( Mallotus villosus ), the dominant planktivorous fish in this area, was monitored using five hydroacoustic surveys. The goal was to determine whether environmental histories are helpful in explaining spatial and temporal differences in larval shanny growth, measured as cumulative distribution functions (CDF) of growth rates. We found evidence for a selective loss of slower growing individuals and recognized considerable spatial differences in the CDF of larval growth rates. Consistent patterns in capelin abundance suggested that faster growing survivors, sampled at the end of the 2-week period, developed in areas of low predator densities. A dome-shaped relationship between temperature and larval growth was observed, explaining a significant but small amount of the overall variability (14%). Effects of experienced prey concentrations on larval growth rates could not be demonstrated.

Bottom-Up Regulation of Capelin, a Keystone Forage Species

The Northwest Atlantic marine ecosystem off Newfoundland and Labrador, Canada, has been commercially exploited for centuries. Although periodic declines in various important commercial fish stocks have been observed in this ecosystem, the most drastic changes took place in the early 1990s when the ecosystem structure changed abruptly and has not returned to its previous configuration. In the Northwest Atlantic, food web dynamics are determined largely by capelin (Mallotus villosus), the focal forage species which links primary and secondary producers with the higher trophic levels. Notwithstanding the importance of capelin, the factors that influence its population dynamics have remained elusive. We found that a regime shift and ocean climate, acting via food availability, have discernible impacts on the regulation of this population. Capelin biomass and timing of spawning were well explained by a regime shift and seasonal sea ice dynamics, a key determinant of the pelagic spring bloom. Our findings are important for the development of ecosystem approaches to fisheries management and raise questions on the potential impacts of climate change on the structure and productivity of this marine ecosystem.

Critical thermal maxima of diploid and triploid brook charr, Salvelinus fontinalis

The purpose of this experiment was to determine whether diploid and triploid brook charr, Salvelinus fontinalis, differ in their critical thermal maxima (CTM). Two age classes were tested (underyearlings, having average weight of 25 g, and yearlings, having average weight of 668 g) at two rates of temperature increase (2° C h-1 and 15° C h-1). No effect of ploidy on CTM was found. Fish exposed to the faster rate of temperature increase had higher CTM values than those exposed to the slower rate (underyearlings: 29.5 ± 0.1° C versus 29.1 ± 0.1° C in one trial and 29.8 ± 0.1° C versus 28.3 ± 0.1° C in a second trial; yearlings: 29.3 ± 0.1° C versus 27.7 ± 0.1° C in two trials, p < 0.001 in all cases). Underyearlings had higher CTM values than yearlings (29.2 ± 0.1° C versus 28.5 ± 0.1° C, p < 0.05). Female yearlings, which were immature, had higher CTM values than males, which had previously matured as one-year-olds (28.8 ± 0.1° C versus 28.3 ± 0.1° C, p < 0.001).

Operationalizing integrated ecosystem assessments within a multidisciplinary team: lessons learned from a worked example

Operationalizing integrated ecosystem assessments within a multidisciplinary team: lessons learned from a worked example Geret S. DePiper*, Sarah K. Gaichas, Sean M. Lucey, Patricia Pinto da Silva, M. Robin Anderson, Heather Breeze, Alida Bundy, Patricia M. Clay, Gavin Fay, Robert J. Gamble, Robert S. Gregory, Paula S. Fratantoni, Catherine L. Johnson, Mariano Koen-Alonso, Kristin M. Kleisner, Julia Olson, Charles T. Perretti, Pierre Pepin, Fred Phelan, Vincent S. Saba, Laurel A. Smith, Jamie C. Tam, Nadine D. Templeman, and Robert P. Wildermuth NOAA Northeast Fisheries Science Center, 166 Water Street, Woods Hole, MA 02543, USA Fisheries and Oceans Canada, Northwest Atlantic Fisheries Centre, 80 East White Hills, St. John’s, NL A1C 5X1, Canada Fisheries and Oceans Canada, Bedford Institute of Oceanography, 1 Challenger Drive, Dartmouth, NS B2Y 4A2, Canada School for Marine Science & Technology, University of Massachusetts Dartmouth, 200 Mill Road, Suite 30, Fairhaven, MA 02719, USA Environmental Defense Fund, Floor 28, 123 Mission Street, San Francisco, CA 94105, USA National Oceanic and Atmospheric Administration, National Marine Fisheries Service, Northeast Fisheries Science Center, Geophysical Fluid Dynamics Laboratory, Princeton University Forrestal Campus, 201 Forrestal Road, Princeton, NJ 08540, USA

Canadian Healthy Oceans Network (CHONe): An Academic–Government Partnership to Develop Scientific Guidelines for Conservation and Sustainable Usage of Marine Biodiversity

ABSTRACT The Canadian Healthy Oceans Network (CHONe) research program formed to unite leading academic and government researchers with managers from Canadas national resource agencies to address an urgent need for better scientific information on marine biodiversity in Canadas Atlantic, Pacific, and Arctic waters. Specifically, the network is producing diverse scientific products to inform policy commitments in conservation and sustainable use of marine biodiversity resources. A common disconnect between science-driven research and policy application results in a dearth of science information relevant to specific decisions that cannot wait for knowledge to accumulate. To narrow this gap, CHONe research structures around three interlinking and integrated themes of marine biodiversity, ecosystem function, and population connectivity. CHONe products span from baseline maps, databases, and barcodes as tools to understand processes and monitor future change; spatial and temporal predictive tools to maximize ...

Signatures of the collapse and incipient recovery of an overexploited marine ecosystem

The Northwest Atlantic cod stocks collapsed in the early 1990s and have yet to recover, despite the subsequent establishment of a continuing fishing moratorium. Efforts to understand the collapse and lack of recovery have so far focused mainly on the dynamics of commercially harvested species. Here, we use data from a 33-year scientific trawl survey to determine to which degree the signatures of the collapse and recovery of the cod are apparent in the spatial and temporal dynamics of the broader groundfish community. Over this 33-year period, the groundfish community experienced four phases of change: (i) a period of rapid, synchronous biomass collapse in most species, (ii) followed by a regime shift in community composition with a concomitant loss of functional diversity, (iii) followed in turn by periods of slow compositional recovery, and (iv) slow biomass growth. Our results demonstrate how a community-wide perspective can reveal new aspects of the dynamics of collapse and recovery unavailable from the analysis of individual species or a combination of a small number of species. Overall, we found evidence that such community-level signals should be useful for designing more effective management strategies to ensure the persistence of exploited marine ecosystems.

Statistical Projections of Ocean Climate Indices off Newfoundland and Labrador

ABSTRACT Present global climate models (GCMs) are unable to provide reliable projections of physical oceanographic properties on the continental shelf off Newfoundland and Labrador. Here we first establish linear statistical relationships between oceanographic properties and coastal air temperature based on historical observations. We then use these relationships to project future states of oceanographic conditions under different emission scenarios, based on projected coastal air temperatures from global (Canadian Earth System Model, version 2 (CanESM2), Geophysical Fluid Dynamics Laboratorys Earth System Model, version 2M (GFDL-ESM2M)) and regional (Canadian Regional Climate Model (CRCM)) climate models. Estimates based on CanESM2 agree reasonably well with observed trends, but the trends based on two other models result in substantial underestimates. Projected trends are closer to observations under a high emission scenario than under median-level emission scenarios. Over the next 50 years, the increases in projected sea surface temperature off eastern Newfoundland (Station 27) range from 0.4° to 2.2°C. The increases in bottom ocean temperature over the Newfoundland and Labrador Shelves range from 0.4° to 2.1°C. The area of the cold intermediate layer (<0°C) on the Flemish Cap (47°N) section is projected to decrease by 9–35% of the 1981–2010 average. The decline in sea-ice extent off Newfoundland and Labrador ranges from 20 to 77% of the average (0.4–1.5 × 105 km2), and the reduction in the number of icebergs at 48°N off Newfoundland ranges from 30% to nearly 100% of the norm at this latitude. Despite differences among the models and scenarios, statistical projections indicate that conditions in this region will reach or exceed their maxima (sea surface temperature, bottom ocean temperature) and reach or fall below their minima (sea-ice extent, number of icebergs) that were observed during the course of monitoring activities over the past 30–60 years, possibly as early as 2040. We note, however, that the statistical relationships based on historical data may not hold in the future because of the changing influence of input from Arctic waters and because of large uncertainties in projected air temperatures from GCMs.

A Canadian contribution to an integrated Atlantic ocean observing system (IAOOS)

We review opportunities, impediments, regional scope and principles for a Canadian contribution to an Integrated Atlantic Ocean Observing System (IAOOS) in the context of the Galway Alliance. This contribution should build on what exists, plan ahead for data management and data access, be flexible and sustainable, encourage international involvement, be science-led, foster research aggregation, and have close links to remote sensing, data assimilation and prediction programs. Existing programs that can contribute are described, and new initiatives that will broaden relevance of the Observing System are identified, including biological/ ecosystem observations. Specific platforms and technologies for both near-shore and offshore waters are listed, together with areas where new developments are needed. Finally, we outline a strategy for the development of an Atlantic Canada Regional Ocean Observing System (ACROOS).

The Efficacy of Small Closures: A Tale of Two Marine Protected Areas in Canada

Marine managers and conservationists increasingly emphasize the importance of Marine Protected Areas (MPAs) as a key tool for sustaining ocean ecosystems. The designation of MPAs often meets with resistance from stakeholders for reasons that include loss of access, unclear benefits, and misunderstanding of the nature of the intervention. In this chapter, we use case studies from two small MPAs on the east coast of Canada to illustrate the issues surrounding planning, implementing, and demonstrating their efficacy.