Pradip Dey
Free University of Berlin
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Publication
Featured researches published by Pradip Dey.
Polymer Chemistry | 2016
Pradip Dey; Shabnam Hemmati-Sadeghi; Rainer Haag
A hydrolytically degradable, cyclooctyne terminated polyethylene glycol polycaprolactone (PEG-PCL-DIC) linker has been synthesized and used to form degradable dendritic polyglycerol sulfate (dPGS)/star PEG based hydrogels. dPGS is a highly branched sulfated synthetic polymer which is analogous to heparan sulfate glycosaminoglycan (GAG). The degradation is achieved by introducing caprolactone units in the PEG. A new strained cyclooctyne–alkyne derivative is designed and has been used for the introduction of strained cyclooctynes in the linker by protecting the strained cyclooctyne using a Cu(I) catalyst and excess Cu(I) was used as a catalyst for the coupling of the remaining alkyne to the azide containing linker. Afterwards the strained cyclooctyne is regenerated by deprotecting them and used for the preparation of hydrogels. The linker is characterized by various spectroscopic methods. All the hydrogels have a highly crosslinked structure and the hydrogel formation was cytocompatible towards mouse fibroblasts L929 cells. The degradability of the hydrogels has been tested by gravimetrically monitoring the mass loss (%) in DMEM containing 10% FCS.
Macromolecular Bioscience | 2016
Pradip Dey; Tobias Schneider; Leonardo Chiappisi; Michael Gradzielski; Gundula Schulze-Tanzil; Rainer Haag
A stable polymeric network that mimics the highly polyanionic extracellular cartilage matrix still remains a great challenge. The main aim of this study is to present the synthesis of dendritic polyglycerol sulfate (dPGS)-based in situ forming hydrogels using strain promoted azide-alkyne cycloaddition reactions. A real time rheological study has been used to characterize the hydrogel properties. The viability of encapsulated human chondrocytes in the different hydrogels are monitored using live-dead staining. Furthermore, type I and II collagen gene have been analyzed. Hydrogels with elastic moduli ranging from 1 to 5 kPa have been prepared by varying the dPGS amount. The chondrocyte viability in dPGS hydrogels is found to be higher than in pure PEG and alginate-based hydrogels after 21 d. The higher cell viability in the dPGS engineered hydrogels can be explained by the fact that dPGS can interact with different proteins responsible for cell growth and proliferation.
ACS Applied Materials & Interfaces | 2014
Pradip Dey; Miriam Adamovski; Simon Friebe; Artavazd Badalyan; Radu-Cristian Mutihac; Florian Paulus; Silke Leimkühler; Ulla Wollenberger; Rainer Haag
This work describes the formation of a new dendritic polyglycerol-poly(ethylene glycol)-based 3D polymer network as a matrix for immobilization of the redox enzyme periplasmatic aldehyde oxidoreductase to create an electrochemical biosensor. The novel network is built directly on the gold surface, where it simultaneously stabilizes the enzyme for up to 4 days. The prepared biosensors can be used for amperometric detection of benzaldehyde in the range of 0.8-400 μM.
Biomacromolecules | 2018
Xiao Xu; Qidi Ran; Pradip Dey; Rohit Nikam; Rainer Haag; Matthias Ballauff; Joachim Dzubiella
Dendritic polyelectrolytes constitute high potential drugs and carrier systems for biomedical purposes. Still, their biomolecular interaction modes, in particular those determining the binding affinity to proteins, have not been rationalized. We study the interaction of the drug candidate dendritic polyglycerol sulfate (dPGS) with serum proteins using isothermal titration calorimetry (ITC) interpreted and complemented with molecular computer simulations. Lysozyme is first studied as a well-defined model protein to verify theoretical concepts, which are then applied to the important cell adhesion protein family of selectins. We demonstrate that the driving force of the strong complexation, leading to a distinct protein corona, originates mainly from the release of only a few condensed counterions from the dPGS upon binding. The binding constant shows a surprisingly weak dependence on dPGS size (and bare charge) which can be understood by colloidal charge-renormalization effects and by the fact that the magnitude of the dominating counterion-release mechanism almost exclusively depends on the interfacial charge structure of the protein-specific binding patch. Our findings explain the high selectivity of P- and L-selectins over E-selectin for dPGS to act as a highly anti-inflammatory drug. The entire analysis demonstrates that the interaction of proteins with charged polymeric drugs can be predicted by simulations with unprecedented accuracy. Thus, our results open new perspectives for the rational design of charged polymeric drugs and carrier systems.
Journal of Biomedical Materials Research Part B | 2018
Shabnam Hemmati-Sadeghi; Pradip Dey; Jochen Ringe; Rainer Haag; Michael Sittinger; Tilo Dehne
This study aimed to evaluate the potential of an anti-inflammatory polyethylene glycol (PEG) hydrogel for osteoarthritis (OA) management in an OA in vitro model. Freshly isolated porcine chondrocytes were maintained in high-density cultures to form cartilage-like three-dimensional micromasses. Recombinant porcine tumor necrosis factor-alpha (TNF-α) was used to induce OA-like changes. Normal and OA-like micromasses were treated with dendritic polyglycerol sulfate-based PEG hydrogel. Live/dead staining showed that all micromasses remained vital and presented similar morphological characteristics. Safranin-O staining demonstrated a typical depletion of glycosaminoglycans in TNF-α-treated micromasses but not in the presence of the hydrogel. There was no distinct difference in immunohistochemical detection of type II collagen. Microarray data showed that rheumatoid arthritis and TNF signaling pathways were down regulated in hydrogel-treated OA-like micromasses compared to nontreated OA-like micromasses. The hydrogel alone did not affect genes related to OA such as ANPEP, COMP, CXCL12, PTGS2, and TNFSF10, but it prevented their regulation caused by TNF-α. This study provides valuable insights toward a fully synthetic hydrogel for the intra-articular treatment of OA. The findings proved the potential of this hydrogel to prevent the development of TNF-α-induced OA with regard to proteoglycan loss and TNF-α-induced expression pattern without additional signs of differentiation and inflammation.
ACS Nano | 2018
Pradip Dey; Tobias Bergmann; Jose Luis Cuellar-Camacho; Svenja Ehrmann; Mohammad Suman Chowdhury; Minze Zhang; Ismail Dahmani; Rainer Haag; Walid Azab
The entry process of viruses into host cells is complex and involves stable but transient multivalent interactions with different cell surface receptors. The initial contact of several viruses begins with attachment to heparan sulfate (HS) proteoglycans on the cell surface, which results in a cascade of events that end up with virus entry. The development of antiviral agents based on multivalent interactions to shield virus particles and block initial interactions with cellular receptors has attracted attention in antiviral research. Here, we designed nanogels with different degrees of flexibility based on dendritic polyglycerol sulfate to mimic cellular HS. The designed nanogels are nontoxic and broad-spectrum, can multivalently interact with viral glycoproteins, shield virus surfaces, and efficiently block infection. We also visualized virus-nanogel interactions as well as the uptake of nanogels by the cells through clathrin-mediated endocytosis using confocal microscopy. As many human viruses attach to the cells through HS moieties, we introduce our flexible nanogels as robust inhibitors for these viruses.
ACS Nano | 2018
Federico Fenaroli; Urska Repnik; Yitian Xu; Kerstin Johann; Simon Van Herck; Pradip Dey; Frode Miltzov Skjeldal; Dominik M. Frei; Shahla Bagherifam; Agnese Kocere; Rainer Haag; Bruno G. De Geest; Matthias Barz; David G. Russell; Gareth Griffiths
The enhanced permeability and retention (EPR) effect is the only described mechanism enabling nanoparticles (NPs) flowing in blood to reach tumors by a passive targeting mechanism. Here, using the transparent zebrafish model infected with Mycobacterium marinum we show that an EPR-like process also occurs allowing different types of NPs to extravasate from the vasculature to reach granulomas that assemble during tuberculosis (TB) infection. PEGylated liposomes and other NP types cross endothelial barriers near infection sites within minutes after injection and accumulate close to granulomas. Although ∼100 and 190 nm NPs concentrated most in granulomas, even ∼700 nm liposomes reached these infection sites in significant numbers. We show by confocal microscopy that NPs can concentrate in small aggregates in foci on the luminal side of the endothelium adjacent to the granulomas. These spots are connected to larger foci of NPs on the ablumenal side of these blood vessels. EM analysis suggests that NPs cross the endothelium via the paracellular route. PEGylated NPs also accumulated efficiently in granulomas in a mouse model of TB infection with Mycobacterium tuberculosis, arguing that the zebrafish embryo model can be used to predict NP behavior in mammalian hosts. In earlier studies we and others showed that uptake of NPs by macrophages that are attracted to infection foci is one pathway for NPs to reach TB granulomas. This study reveals that when NPs are designed to avoid macrophage uptake, they can also efficiently target granulomas via an alternative mechanism that resembles EPR.
ACS Applied Materials & Interfaces | 2018
Anna Herrmann; Lena Kaufmann; Pradip Dey; Rainer Haag; Uwe Schedler
Both noncovalent and covalent encapsulations of active biomolecules, for example, proteins and oligonucleotides, for a new biosensor matrix in an in situ bioorthogonal hydrogel formation via a strain-promoted azide-alkyne cycloaddition reaction were investigated. Unspecific interaction between the gel and the biomolecules as well as protein denaturation was prevented by the bioorthogonal gel components, which ensure a uniform aqueous environment in the hydrogel network. No leaching of the active biomolecules was observed. Additionally, a much higher and also adjustable loading of biomolecules in the hydrogel matrix was achieved compared to conventional biosensor surfaces, where the sensor molecules are immobilized on monolayers (2D surfaces) or brushlike structures (3D surfaces). Spotting experiments of the hydrogel confirm the possibility to use this new surface for microarray-based multiplex applications which require very high signal-to-noise ratios.
Colloids and Surfaces B: Biointerfaces | 2017
Benjamin von Lospichl; Shabnam Hemmati-Sadeghi; Pradip Dey; Tilo Dehne; Rainer Haag; Michael Sittinger; Jochen Ringe; Michael Gradzielski
Advanced Materials Interfaces | 2018
Christoph Schlaich; Yue Fan; Pradip Dey; Jiaxi Cui; Qiang Wei; Rainer Haag; Xu Deng