Priscilla Carvalho

Factors influencing changes in trait correlations across species after using phylogenetic independent contrasts

Comparative interspecific data sets have been analyzed routinely by phylogenetic methods, generally using Felsenstein’s phylogenetic independent contrasts (PIC) method. However, some authors have suggested that it may not be always necessary to incorporate phylogenetic information into statistical analyses of comparative data due to the low influence of shared history on the distribution of␣character states. The main goal of this paper was to undertake a comparison of results from non-phylogenetic Pearson correlation of tip values (TIPs) and phylogenetic independent contrasts analyses (PICs), using 566 correlation coefficients derived from 65 published papers. From each study we collected the following data: taxonomic group, number of species, type of phylogeny, number of polytomies in the phylogenetic tree, if branch length was transformed or not, trait types, the original correlation coefficient between the traits (TIPs) and the correlation coefficient between the traits using the independent contrasts method (PICs). The slope estimated from a regression of PIC correlations on TIP correlations was lower than one, and a paired t-test showed that correlations from PIC are significantly smaller than those obtained by TIP. Thus, PIC analyses tend to decrease the correlation between traits and usually increases the P-value and, thus, favoring the acceptance of the null hypothesis. Multiple factors, including taxonomic group, trait type and use of branch length transformations affected the change in decision regarding the acceptance of the null hypotheses and differences between PIC and TIP results. Due to the variety of factors affecting the differences between results provided by these methods, we suggest that comparative methods should be applied as a conservative approach to cross-species studies. Despite difficulties in quantifying precisely why these factors affect the differences between PIC and TIP, we also suggest that a better evaluation of evolutionary models underlying trait evolution is still necessary in this context and might explain some of the observed patterns.

Effects of temperature on decomposition of a potential nuisance species: the submerged aquatic macrophyte Egeria najas planchom (Hydrocharitaceae)

Decomposition of aquatic plants is influenced by several biotic and abiotic factors. Among them, temperature plays an important role. Despite the increasing number of studies describing the effects of temperature on the decomposition of aquatic macrophytes, little attention has been given to the decay of submerged macrophytes. In this paper, we assessed the effect of temperature on weight loss and chemical composition of detritus of the submerged aquatic macrophyte Egeria najas Planchon (Hydrocharitaceae). Fresh plant material was maintained at 17 degrees C and 27 degrees C, in the dark, in incubation chambers. The overall decay process was best described by a linear model, with rates of 0.014 day(-1) (R2= 94%) and 0.045 day(-1) (R2= 96%) obtained at 17 degrees C and 27 degrees C, respectively. The analysis of covariance (ANCOVA) indicated a significant difference between the decomposition rates at the two temperatures. The rapid breakdown of E. najas detritus, indicated by the decay coefficient, may be explained by its low content of resistant compounds such as cellulose and lignin. The variables analyzed in this study (pH, electrical conductivity, dissolved oxygen in the water and organic matter, total nitrogen and total phosphorus concentration in detritus) showed accentuated responses at 27 degrees C. It is likely that the higher temperature increased microbial activity and, therefore, oxygen consumption in the water, consequently affecting the pH and the rate of ion and nutrient liberation into the aquatic ecosystem. Due to the rapid decomposition of E. najas at high temperatures, a small exportation is expected of this species from its stands to distant regions in tropical reservoirs, where it is considered a potential nuisance species.

Brazilian articles in international journals on Limnology

SummaryWe assessed the contribution of Brazilian limnologists (freshwater ecologists) in international journals in the period 1970-2004. Brazilian contribution was low and regular in the 1970s, but increased steeply after 1980 with no signs of stabilization until the present. Articles authored by Brazilians tend to be less cited than articles authored by non-Brazilians, although this difference is reduced in co-authored articles with international researchers.xa0 Brazilian articles are not distributed homogenously among the sub-areas of Limnology, but present some biases that can be explained by intellectual legacy. Brazil has invested since the 1970s in establishing postgraduate courses in Brazil and in the last years has turned the focus to a better qualification of these courses. We believe these are the main reasons for the conspicuous development of Brazilian Limnology.

Patterns in the organization of Cerrado pond biodiversity in Brazilian pasture landscapes

There is a worldwide concern on the loss of pond biodiversity in human dominated landscapes. Nevertheless, agricultural activities appear to increase pond number in the Brazilian Cerrado through damming streams for cattle raising. These man-made ponds may represent important landscape features, but their importance to regional biodiversity has not yet been studied. Here, we evaluated differences in alpha and beta diversity under a multi-taxonomic approach, as well as tested pond size as the main driver of local species richness. We also assessed the importance of environmental heterogeneity through the analysis of the regional species accumulation curves (SAC). The overall result suggests that species turnover was the major component of regional biodiversity for all groups. Major physical and chemical water conditions had no effects on algae, macrophytes, water bugs, and birds species richness. Pond size had a significant effect on Odonata and fish species richness, while water beetles and amphibians were influenced by trophic conditions. Results from regional SAC show variations among different taxonomic groups regarding landscape heterogeneity: only algae, fish, and birds do not reached to an asymptote and had higher z-values. Our results highlight the importance of ponds for biodiversity conservation in increasingly agricultural landscapes in central Brazil.

Patterns of the aquatic macrophyte cover in Cachoeira Dourada Reservoir (GO-MG)

The relationship between the aquatic macrophyte cover in upper segments of tributaries and this cover in these tributaries but near the reservoirs main body was tested. Sixteen taxa belonging to 12 families of aquatic macrophytes were recorded in Cachoeira Dourada Reservoir. The most frequent species were Eichhornia azurea (frequency of occurrence=92%; n=37 sites) and E. crassipes (44%). Upper segments of the tributaries were the main areas colonized by these aquatic macrophytes. The positive relationship between the aquatic macrophyte cover between the upper and lower segments of tributaries indicates the importance of dispersion in the colonization of the arms and the reservoirs main body.

The impact of Felsenstein's “Phylogenies and the comparative method” on evolutionary biology

SummaryFelsenstein’s (1985) method of phylogenetic independent contrasts is probably the most commonly used technique in evolutionary biology to study adaptation of organisms to their environment, taking phylogeny into account. Here, we performed a scientometric evaluation of all 1462 articles that cited Felsenstein (1985) between 1985 and 2002, in order to analyze the impact of his comparative method on the evolutionary research program and what has been done since it. We found that Felsentein’s (1985) article can be classified as a “hot paper” or a breakthrough contribution, since it was the most cited article from The American Naturalist published in 1985. Also, it can be considered as a “citation classic”, since it is the third more cited paper in The American Naturalist from 1945 to 2002. In general, papers that cited Felsenstein (1985) were published in high-impact journals, and most of them are theoretical articles indicating that biologists are aware of statistical and conceptual problems in dealing with comparative methods.

Environmental factors affecting chlorophyll-a concentration in tropical floodplain lakes, Central Brazil.

Chlorophyll-a (Chl-a) has been widely used in the assessment and monitoring of aquatic environments. Local and regional factors can influence Chl-a concentrations; moreover, the connection between terrestrial and aquatic ecosystems is a major paradigm within aquatic ecology. Here, we investigate the spatial distribution of Chl-a concentrations in a tropical savannah floodplain in Central Brazil using a broad spatial data set (a 900-km north-south transect; 30 lakes). We determine the relative importance of local environmental variables (limnological and morphometric) and regional (land use) and spatial distances (spatial eigenvector) on Chl-a concentrations using partial linear regression. We evaluate the direct and indirect effects of local and regional variables on Chl-a with a path analysis. Our results indicate spatially autocorrelated patterns wherein lakes in closer proximity showed more similar levels of Chl-a than more distant lakes. Local environmental factors explained most variance in Chl-a (R2adju2009=u20090.28; Pu2009=u20090.02); more specifically, both lake area and total nitrogen significantly (Pu2009<u20090.05) explained Chl-a concentrations (direct effects). Meanwhile, regional factors neither directly nor indirectly predicted Chl-a. Thus, internal processes, such as the resuspension of sediment (which is frequent in tropical floodplains), rather than external influences, were the main factors that explained Chl-a concentrations in this study. The importance of local variables in structuring Chl-a concentration may be used to guide the conservation of the aquatic ecosystems in these tropical floodplain lakes.

Effects of connectivity and watercourse distance on temporal coherence patterns in a tropical reservoir

Temporal coherence exists when environmental variables measured at different spatial locations vary synchronously over time. This is an important property to be analyzed because levels of coherence may indicate the role of regional and local processes in determining population and ecosystem dynamics. Also, studies on temporal coherence may guide the optimal allocation of sampling effort. We analyzed a dataset from a monitoring program undertaken at a tropical reservoir (Peixe Angical Reservoir, State of Tocantins, Brazil) to test three predictions. First, coherence should be a common pattern in the reservoir considering that sampling sites were distributed in a single water body and over a small spatial extent. Second, coherence was expected to decline with increasing watercourse distance and to increase with hydrological connectivity. Third, abiotic variables should exhibit higher coherence than biological variables. Twenty limnological variables were monitored at 14 sites and for 31xa0months. We found significant levels of coherence for all variables, supporting our first prediction. Watercourse distances, hydrological connectivity, or both were significant predictors of coherence for 17 environmental variables. In all these cases, the signs of the coefficients were in the direction predicted. Interestingly, for some environmental variables (color, turbidity, alkalinity, and total phosphorus), hydrological connectivity was even more important in predicting coherence than watercourse distance. The view that abiotic variables should exhibit higher coherence than biological variables was supported. Our analyses revealed that precipitation was an important factor inducing coherence of a key set of environmental variables, highlighting the role of regional processes in ecosystem dynamics.