Prithiviraj Fernando

DNA Analysis Indicates That Asian Elephants Are Native to Borneo and Are Therefore a High Priority for Conservation

The origin of Borneos elephants is controversial. Two competing hypotheses argue that they are either indigenous, tracing back to the Pleistocene, or were introduced, descending from elephants imported in the 16th–18th centuries. Taxonomically, they have either been classified as a unique subspecies or placed under the Indian or Sumatran subspecies. If shown to be a unique indigenous population, this would extend the natural species range of the Asian elephant by 1300 km, and therefore Borneo elephants would have much greater conservation importance than if they were a feral population. We compared DNA of Borneo elephants to that of elephants from across the range of the Asian elephant, using a fragment of mitochondrial DNA, including part of the hypervariable d-loop, and five autosomal microsatellite loci. We find that Borneos elephants are genetically distinct, with molecular divergence indicative of a Pleistocene colonisation of Borneo and subsequent isolation. We reject the hypothesis that Borneos elephants were introduced. The genetic divergence of Borneo elephants warrants their recognition as a separate evolutionary significant unit. Thus, interbreeding Borneo elephants with those from other populations would be contraindicated in ex situ conservation, and their genetic distinctiveness makes them one of the highest priority populations for Asian elephant conservation.

Population differentiation within and among Asian elephant (Elephas maximus) populations in southern India

Southern India, one of the last strongholds of the endangered Asian elephant (Elephas maximus), harbours about one-fifth of the global population. We present here the first population genetic study of free-ranging Asian elephants, examining within- and among-population differentiation by analysing mitochondrial DNA (mtDNA) and nuclear microsatellite DNA differentiation across the Nilgiris-Eastern Ghats, Anamalai, and Periyar elephant reserves of southern India. Low mtDNA diversity and ‘normal’ microsatellite diversity were observed. Surprisingly, the Nilgiri population, which is the worlds single largest Asian elephant population, had only one mtDNA haplotype and lower microsatellite diversity than the two other smaller populations examined. There was almost no mtDNA or microsatellite differentiation among localities within the Nilgiris, an area of about 15 000 km2. This suggests extensive gene flow in the past, which is compatible with the home ranges of several hundred square kilometres of elephants in southern India. Conversely, the Nilgiri population is genetically distinct at both mitochondrial and microsatellite markers from the two more southerly populations, Anamalai and Periyar, which in turn are not genetically differentiated from each other. The more southerly populations are separated from the Nilgiris by only a 40-km-wide stretch across a gap in the Western Ghats mountain range. These results variably indicate the importance of population bottlenecks, social organization, and biogeographic barriers in shaping the distribution of genetic variation among Asian elephant populations in southern India.

BEHAVIOR RATHER THAN DIET MEDIATES SEASONAL DIFFERENCES IN SEED DISPERSAL BY ASIAN ELEPHANTS

Digestive physiology and movement patterns of animal dispersers determine deposition patterns for endozoochorously dispersed seeds. We combined data from feeding trials, germination tests, and GPS telemetry of Asian elephants (Elephas maximus) to (1) describe the spatial scale at which Asian elephants disperse seeds; (2) assess whether seasonal differences in diet composition and ranging behavior translate into differences in seed shadows; and (3) evaluate whether scale and seasonal patterns vary between two ecologically distinct areas: Sri Lankas dry monsoon forests and Myanmars (Burma) mixed-deciduous forests. The combination of seed retention times (mean 39.5 h, maximum 114 h) and elephant displacement rates (average 1988 m in 116 hours) resulted in 50% of seeds dispersed over 1.2 km (mean 1222-2105 m, maximum 5772 m). Shifts in diet composition did not affect gut retention time and germination of ingested seeds. Elephant displacements were slightly longer, with stronger seasonal variation in Myanmar. As a consequence, seed dispersal curves varied seasonally with longer distances during the dry season in Myanmar but not in Sri Lanka. Seasonal and geographic variation in seed dispersal curves was the result of variation in elephant movement patterns, rather than the effect of diet changes on the fate of ingested seeds.

Perceptions and Patterns of Human–elephant Conflict in Old and New Settlements in Sri Lanka: Insights for Mitigation and Management

Human–elephant conflict poses a major threat to elephants in many parts of Asia, including Sri Lanka. We studied human–elephant conflict in two areas with contrasting scenarios of landuse and conflict, Kahalle and Yala. Kahalle was developed and settled under the Mahaweli irrigation project and the main agricultural practice was irrigated agriculture, with two annual growing seasons. The area was a mosaic of settlements, agriculture, and small forest patches with ill defined human- and elephant-use areas. Elephants ranged within the habitat mosaic year round, occupying remnant forest patches and raiding adjacent crops at night. In contrast, Yala was dominated by a large protected area complex, and the main agricultural methods were slash-and-burn agriculture and rain-fed paddy cultivation. Human- and elephant-use areas were well defined and segregated. The protected area provided elephants with a refuge and food during the rainy season, when the single annual crop was grown. During the dry season, elephants moved into slash-and-burn areas and utilized leftover crops and pioneer vegetation in fallow fields. The landuse pattern and agricultural practices in Yala facilitated co-existence, whereas that in Kahalle led to year round conflict. We suggest that areas managed according to traditional landuse practices should be part of an elephant conservation strategy, where people and elephants have to share resources.

Genetic diversity, phylogeny and conservation of the Javan rhinoceros ( Rhinoceros sondaicus )

With a total population of less than 60 individuals limited to two locations, the Javan rhinoceros is perhaps the most endangered large mammal on earth. Although species specific information is crucial to its conservation, its precarious status, habitat inaccessibility, and behavioral adaptations pose major obstacles to its study. Here we report on the first genetic analysis of the two extant populations, in Ujung Kulon, Indonesia, and Cat Tien, Vietnam, and discuss their conservation. As its critically endangered status precluded invasive sampling, we extracted DNA from dung, amplifying and sequencing segments of the mtDNA 12S rRNA gene and the non-coding D-loop. Divergence between Javan rhinos from Ujung Kulon and Cat Tien was similar to that between recognized subspecies of African rhinos, and exceeded that between Sumatran rhinos. The Ujung Kulon and Cat Tien populations represent separate Evolutionary Significant Units, advocating independent management. However, given the precariousness of the Cat Tien population, demographic considerations may override genetic issues in the short term. Genetic diversity of Javan rhinos was low and population expansion in the immediate future will be critical for its survival.

Population genetic structure and conservation of Asian elephants (Elephas maximus) across India

This study examines the population genetic structure of Asian elephants (Elephas maximus) across India, which harbours over half the worlds population of this endangered species. Mitochondrial DNA control region sequences and allele frequencies at six nuclear DNA microsatellite markers obtained from the dung of free-ranging elephants reveal low mtDNA and typical microsatellite diversity. Both known divergent clades of mtDNA haplotypes in the Asian elephant are present in India, with southern and central India exhibiting exclusively the β clade of Fernando et al. (2000), northern India exhibiting exclusively the α clade and northeastern India exhibiting both, but predominantly the α clade. A nested clade analysis revealed isolation by distance as the principal mechanism responsible for the observed haplotype distributions within the α and β clades. Analyses of molecular variance and pairwise population FST tests based on both mitochondrial and microsatellite DNA suggest that northern-northeastern India, central India, Nilgiris (in southern India) and Anamalai-Periyar (in southern India) are four demographically autonomous population units and should be managed separately. In addition, evidence for female philopatry, male-mediated gene flow and two possible historical biogeographical barriers is described.

Problem-Elephant Translocation: Translocating the Problem and the Elephant?

Human-elephant conflict (HEC) threatens the survival of endangered Asian elephants (Elephas maximus). Translocating “problem-elephants” is an important HEC mitigation and elephant conservation strategy across elephant range, with hundreds translocated annually. In the first comprehensive assessment of elephant translocation, we monitored 16 translocations in Sri Lanka with GPS collars. All translocated elephants were released into national parks. Two were killed within the parks where they were released, while all the others left those parks. Translocated elephants showed variable responses: “homers” returned to the capture site, “wanderers” ranged widely, and “settlers” established home ranges in new areas soon after release. Translocation caused wider propagation and intensification of HEC, and increased elephant mortality. We conclude that translocation defeats both HEC mitigation and elephant conservation goals.

Comparison of the genetic variation of captive ring-tailed lemurs with a wild population in Madagascar

Genetic variability among captive and wild ring-tailed lemurs (Lemur catta) was assessed using mitochondrial and nuclear DNA data. A 529 bp segment of mtDNA was sequenced and 9 microsatellite loci were genotyped for 286 ring-tailed lemurs. Samples were obtained from the well-studied L. catta population at the Bezà Mahafaly Special Reserve and from captive animals at six institutions worldwide. We found evidence of possible patrilineal contribution but the absence of matrilineal contribution from the Bezà area, and haplotypes not found in Bezà but present in Ambohimahavelona, Andringitra Massif, and other unknown locations, in the sampled captive population, indicating that the founders of the captive population originated from a wide geographic range. Total genetic variation and relatedness in captive L. catta in the six institutions were similar in extent to that of the wild population in Bezà. Based on the diverse origins of the captive population founders our results suggest the erosion of genetic diversity in the captive population. Sampled individuals from the same institution were more closely related to each other than members of a social group in the wild. Individuals housed at different institutions were less closely related than those of different social groups at Bezà, indicating lower genetic exchange between captive institutions than between social groups in a locality in the wild. Our findings underscore the usefulness of genotyping in determining the geographic origin of captive population founders, obtaining pedigree information if paternity is uncertain, and in maximizing preservation of extant genetic diversity in captivity.

A Preliminary Study on the Impact of Changing Shifting Cultivation Practices on Dry Season Forage for Asian Elephants in Sri Lanka

Shifting cultivation, in which fields are traditionally cultivated for two or three consecutive years and left fallow for four to five years, is an ancient practice still prevalent in the dry zone of Sri Lanka. Traditionally, shifting agriculture is rain dependent and is limited to the wet season. However, traditional patterns are now changing due to population pressures. We assessed the use of shifting agriculture areas by Asian elephants (Elephas maximus) and the availability of fodder in active fields during the dry season, to evaluate the impact of changing cultivation practices on elephants. We radio-tracked a juvenile and an adult male, representative of the two social groupings of herds and adult males respectively, based on the sexually dimorphic social structure of elephants. Although the small sample size precluded definitive conclusions, the tracking data were consistent with extensive elephant use of shifting cultivation areas during the dry season. We conducted line transects and plots in fields cultivated continuously for 1-20 years, assessing the growth of grasses and four browse species selected as indicators of elephant food. Grass was plentiful in early dry season, representing an important but transient food source. Browse density and volume remained constant through the dry season. Browse density but not volume decreased with increasing number of consecutive years of cultivation. We conclude that shifting agriculture fields under active cultivation are a significant dry season food source for elephants. This benefit is likely to decrease with additional years of continued cultivation and/or longer cultivation seasons.

Water-body use by Asian elephants in Southern Sri Lanka

We assessed water-body use by elephants through monitoring elephant signs around them. Elephant footprints and dung piles were recorded at 25 water bodies fortnightly for one year. Elephants preferred perennial water bodies and avoided those with temporary human dwellings. Human activities did not significantly affect elephant use of water bodies, suggesting low incidence of activities and behavioral adaptation to them by elephants. Elephant signs at perennial water bodies increased in the dry season. The monitoring technique was able to detect differences in elephant densities in two areas and establish the presence of herds even at low densities. We conclude that outside protected areas, large perennial water bodies represent a preferred resource for elephants, and that assessing elephant signs around water bodies is a useful technique for monitoring elephant presence for management and research purposes.