Qian Li

Genome Sequence of the Pyrene- and Fluoranthene-Degrading Bacterium Cycloclasticus sp. Strain PY97M.

ABSTRACT Cycloclasticus sp. strain PY97M was isolated from a phenanthrene-degrading consortium, enriched from Yellow Sea sediment of China. Here, we present the draft genome sequence of strain PY97M, which contains 2,359,509 bp with a G+C content of 41.92% and contains 2, 264 protein-coding genes and 40 tRNAs.

Marinobacter aromaticivorans sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from sea sediment.

A rod-shaped, Gram-stain-negative, slightly halotolerant bacterium, designated strain D15-8PT, was isolated from a sediment sample from the South China Sea. The strain could grow in NaCl concentrations ranging from 0.5 % to 10 % (w/v) (optimum 0.5-1.5 %), and could be cultivated at 10-40 °C (optimum 25 °C) and pH 5.5-9.5 (optimum pH 7.0-8.0). The strain was positive for catalase, oxidase, and hydrolysis of Tween 80, but negative for hydrolysis of DNA and gelatin, nitrite reduction, indole production, Voges-Proskauer reaction, and methyl red test. Strain D15-8PT could biodegrade naphthalene, phenanthrene, and anthracene. The major respiratory quinone was Q-9. The main cellular fatty acids were C12 : 0 (11.5 %), C14 : 0 3-methyl (22.0 %), C16 : 0 (19.2 %), C16 : 1ω9c (22.9 %), and C18 : 1ω9c (6.7 %). The polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, an unidentified aminophospholipid and an unidentified phospholipid. The DNA G+C content was 56.8 mol%. Phylogenetic analyses based on 16S rRNA genes showed that strain D15-8PT was most closely related to Marinobacter maritimus JCM 12521T (98.5 % 16S rRNA gene sequence similarity), Marinobacter antarcticus CGMCC 1.10835T (98.1 %), Marinobacter lipolyticus DSM 15157T (97.1 %), and Marinobacter guineae CECT 7243T (97.0 %). Results of the gyrB gene analysis and DNA-DNA hybridization were both less than the cut-off values (90 % for gyrB gene sequence similarity and 70 % for DNA-DNA hybridization). On the basis of this taxonomic study using a polyphasic approach, strain D15-8PT represents a novel species of the genus Marinobacter, for which the name Marinobacter aromaticivorans sp. nov. is proposed. The type strain is D15-8PT ( = CGMCC 1.11015T = KCTC 23781T).

Genome Sequence of the Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Strain Marinobacter nanhaiticus D15-8WT.

ABSTRACT Marinobacter nanhaiticus strain D15-8WT was isolated from a phenanthrene-degrading consortium, enriched from sediment of the South China Sea. Here, we present the draft genome of strain D15-8WT, which contains 5,358,309 bp with a G+C content of 58.53% and contains 4,829 protein-coding genes and 47 tRNA genes.

Genome Sequence of the Petroleum Hydrocarbon-Degrading Bacterium Alcanivorax sp. Strain 97CO-5

ABSTRACT Alcanivorax sp. strain 97CO-5 was isolated from a crude-oil-degrading consortium, enriched from Yellow Sea sediment of China. Here, we present the draft genome of strain 97CO-5, which comprises 3,251,558 bp with a G+C content of 54.54% and contains 2,962 protein-coding genes and 42 tRNAs.

Genome Sequence of a Marine Alkane Degrader, Alcanivorax sp. Strain 97CO-6

ABSTRACT Alcanivorax sp. strain 97CO-6 was isolated from a crude oil-consuming bacterial consortium, enriched from Yellow Sea sediments from China. Here, we present the draft genome of strain 97CO-6, which contains 3,253,423 bp, with a G+C content of 54.53%, as well as 2,931 protein-coding genes and 42 tRNAs.

Distribution characteristics, sources, and ecological risk assessment of polycyclic aromatic hydrocarbons in sediments from the Qinhuangdao coastal wetland, China

Sixteen USEPA priority polycyclic aromatic hydrocarbons (PAHs) were analyzed by gas chromatography-mass spectrometry. Twenty-three samples were collected from the surface sediments of Qinhuangdao coastal wetlands in this survey. This research aimed to identify the PAHs contamination level, composition pattern, pollution sources, and assess the ecological risk of PAHs. The results showed that the sum of PAH concentrations ranged from 341.61ng/g to 4703.80ng/g (mean: 1367.80ng/g), which is higher than the reported values for different wetlands worldwide. Five- and four-ring PAHs (34.08% and 32.97% of Ʃ16PAHs, severally) were predominant in the wetland sediment. The PAH source distribution in the surface sediments was determined using diagnostic ratio and PCA/MLR. Consequently, multiple PAH sources were found. Of the total PAHs, 70.01% was derived from vehicular emission, 25.73% from coke oven, and 4.26% from petroleum-based product spills. The effect range low/effect range median (ERL/ERM) values indicated a low toxicity risk level. However, the DBahA concentrations exceeded the ERL level, and even the ERM level, in some stations. The mean effects range-median quotient (M-ERM-Q) suggests a low ecological risk for the PAHs, but a medium risk for some stations in the coastal wetland sediments.