R. J. West

Classifying Ecological Quality and Integrity of Estuaries

There is an increasing need in assessing ecological quality and integrity of estuaries and lagoons. This chapter shows the most recent efforts in assessing individual biological elements (from phytoplankton to fishes), together with the integrative tools developed in different geographical areas worldwide. However, reducing complex information from multiple ecosystem elements to a single color or value is a substantial challenge to marine scientists, and requires the integration of different disciplines (chemists, engineers, biologists, ecologists, physics, managers, etc.), to reach agreement on the final assignment of ecological status. Hence, in the near future, emphasis needs to be directed at understanding the complexities of estuarine system functioning rather than simplifying and scaling down the system into smaller components.

Experimental transplanting of Posidonia australis seagrass in Port Hacking, Australia, to assess the feasibility of restoration

Over the last 50 years, about one-third of the original area of the seagrass Posidonia australis has been lost from Port Hacking (Australia) due to anthropogenic impacts. To assess the feasibility of restoring these seagrass meadows, healthy Posidonia rhizomes were transplanted to four impact sites and one control site. Survival rates of transplanted shoots were monitored in situ bi-monthly for 16 months and, at the end of the experiment, rhizome growth, shoot growth, shoot production and growth architecture were assessed by harvesting tagged rhizomes. A total of 575 shoots were transplanted and after 16 months 650 shoots were present. Four of the five sites exhibited high survival rates in the short term (less than six months) but only two impact sites, Burraneer Bay (BB) and Red Jacks Point (RJP), and the control site (CS) survived to the end of the experiment. Total number of shoots increased by 61% at CS, tripled at BB, but decreased by 22% at RJP. Rhizome growth varied significantly between site, from 22.3 +/- 1.4 cm yr(-1) at BB to 9.1 +/- 1.0 cm yr(-1) at RJP. Shoot growth did not vary significantly between sites and was approximately 2-3 cm yr(-1). At BB and CS there was substantial colonisation of the surrounding substrate, with new rhizomes, orthotropic shoots and transitional shoots produced. Survival of transplants appeared to depend on whether the factors that had caused the original loss of Posidonia were still operating in the study area.

Marine genetic swamping: hybrids replace an obligately estuarine fish.

Populations of obligately estuarine taxa are potentially small and isolated and may lack genetic variation and display regional differentiation as a result of drift and inbreeding. Hybridization with a wide‐ranging marine congener should introduce genetic variation and reduce the effects of inbreeding depression and genetic drift. However, high levels of hybridization can cause demographic and genetic swamping. In southeastern Australia hybridization occurs between obligately estuarine Black bream (Acanthopagrus butcheri) and migratory marine Yellowfin bream (Acanthopagrus australis). Here, we surveyed genetic variation at eight microsatellite loci and the mitochondrial control region of juvenile fish from five coastal lagoons (including temporal replication in two lagoons) (total n = 970) to determine the frequency and persistence of hybridization, and its likely consequence for the estuarine restricted A. butcheri. Of 688 juvenile fish genotyped 95% were either A. australis (347) or hybrids (309); only 5% (32) were A. butcheri. Most hybrids were later generation hybrids or A. butcheri backcrosses, which are likely multi‐generational residents within lagoons. Far greater proportions of hybrid juveniles were found within two lagoons that are generally closed to the ocean (>90% hybrid fish within generally closed lagoons vs. 12–27% in permanently or intermittently open lagoons). In both lagoons, this was consistent across multiple cohorts of fish [79–97% hybrid fish (n = 282)]. Hybridization and introgression represent a major threat to the persistence of A. butcheri and have yet to be investigated for large numbers of estuarine taxa.

Evolutionary impacts of hybridization and interspecific gene flow on an obligately estuarine fish

For free‐spawning estuarine taxa, gene flow among estuaries may occur via hybridization with mobile congeners. This phenomenon has rarely been investigated, but is probably susceptible to anthropogenic disturbance. In eastern Australia, the estuarine Black Bream Acanthopagrus butcheri and marine Yellowfin Bream Acanthopagrus australis have overlapping distributions and the potential to hybridize. We used surveys of microsatellite and mtDNA variation in 565 adults from 25 estuaries spanning their distributional range to characterize the species and their putative hybrids. Hybrids were widespread (68% of estuaries) and hybrid frequencies varied greatly among estuaries (0–58%). Most (88%) were classed as advanced generation backcrosses with A. butcheri and displayed A. butcheri mtDNA haplotypes. We found most hybrids in the three estuaries within the zone of sympatry (57%). Our study highlights the underemphasized importance of estuaries as sites of hybridization and suggests that hybridization is driven both by opportunity for contact and human activity.

Inorganic nutrient and oxygen fluxes across the sediment–water interface in the inshore macrophyte areas of a shallow estuary (Lake Illawarra, Australia)

Rates of inorganic nutrient and oxygen fluxes, and gross community primary productivity were investigated using incubated cores in July, August and September 2001, in a seagrass meadow of Lake Illawarra, a barrier estuary in New South Wales, Australia. The results indicated that rates of gross primary productivity were high, varying from C = 0.62 to 1.89 g m−2 d−1; low P/R ratios of 0.28–0.48 define the system as heterotrophic and indicate that more carbon is respired than is produced. In order to determine the effect of macroalgae on O2 and nutrient fluxes, measurements were also conducted on cores from which the macroalgae had been removed. The results showed that the O2 fluxes during light incubations were significantly lower in the cores without macroalgae (P<0.01), indicating that macroalgae could be a significant contributor to the primary production in the lake. In general, nutrient fluxes showed a typical diurnal variation with an efflux from sediments in the dark and a reduced efflux (or uptake) in the light. Dissolved inorganic nitrogen (NO2−+ NO3−+NH4+) net fluxes were directed from the sediments towards the water column and dominated by the NH4+ fluxes (>80%). NO2−+ NO3− and o-P fluxes were always very low during the sampling period. The increasing tendency of net nutrient effluxes, especially NH4+ from July to September, is consistent with the increase of the water temperature and seagrass biomasses. However, in September, significantly lower light, dark and net NH4+ effluxes were found in the cores with macroalgae (SA-sediments) compared with the cores without macroalgae (S-sediments). These results support the hypothesis that actively-growing dense macroalgal mats (i.e., algal blooms in September) may act as a filter reducing the flux of nutrients to the water column.

Growth, episodic recruitment and age truncation in populations of a catadromous percichthyid, Macquaria colonorum.

Temperate basses and perches (family Percichthyidae) worldwide have declined in distribution and abundance during the past few decades due to anthropogenic impacts such as fishing, habitat degradation and alteration to river flows. This study examined differences in the age, growth and longevity of Macquaria colonorum among three south-eastern Australian coastal rivers. Estimates of ages were made by counting opaque zones in sectioned otoliths. Ages were validated by using marginal increment analysis, staining fish otoliths with oxytetracycline and sampling young-of-the-year fish. Length-at-age data from 1644 fish indicated that growth of M. colonorum is rapid in the first 3 to 4 years, after which it slows considerably. Females grew faster and reached larger asymptotic lengths than males. The species was found to be long lived, with the oldest fish estimated at 41 years. Population age structures indicated variable year-class strengths in all three rivers and there was an absence of larger, older (>10 years) individuals in the populations from the two rivers with a history of commercial fishing. These results indicate that M. colonorum populations, similar to other global percichthyid and estuarine-dependent fishes, have been subjected to episodic recruitment and age truncation and that these are likely influenced by environmental flows and fishing pressure.

Does otolith chemistry indicate diadromous lifecycles for five Australian riverine fishes

Diadromy is an important characteristic of the lifecycle of many Australian coastal fishes, but many of these species remain poorly studied. The migratory patterns of five riverine fish species from south-eastern Australia were examined using otolith chemistry. Analyses of individual otoliths from wild-caught fishes revealed distinctive lateral variation in otolith Sr : Ca values that provide good evidence for an amphidromous lifecycle for two species: Myxus petardi and Gobiomorphus australis. Gobiomorphus coxii, Potamalosa richmondia and Notesthes robusta displayed Sr : Ca patterns that indicated that these species may have more complex movements between marine and fresh water. Overall, these results provided quantitative data that supported the lifecycles previously hypothesised for most of the studied fish species. However, M. petardi, which was thought to be catadromous, displayed Sr : Ca variations that suggested an amphidromous lifecycle, at least for the specimens examined. These results also provided further evidence to demonstrate that otolith chemistry is a useful tool for studying the movement patterns of diadromous species and this technique will be especially valuable in identifying species that are most at risk from river regulation and barriers to migration.

Effects of intertidal elevation on the rockpool ichthyofaunas of temperate Australia

A quantitative assessment of the effects of intertidal elevation on rockpool ichthyofaunas was investigated at four locations in southeastern New South Wales, Australia. Rockpools supported high diversity and abundance of fishes mainly comprising the families Clinidae, Blennidae, Tripterygiidae, Gobiidae, Gobiesocidae and Girellidae, which are mostly permanent residents. Mean numbers of species and individuals did not differ among low, medium and high rockpools. In contrast, species composition differed among intertidal rockpool heights with pools mainly being dominated by transient and opportunist species in lower intertidal, opportunists and permanent residents in the mid intertidal, and mainly permanent residents in the high intertidal. Distribution patterns appeared to be related to the morphological and/or physiological adaptations of species to the increasingly harsh and variable environmental conditions with increasing intertidal elevation. Residential status of each species may be used as a proxy for intertidal vertical distribution although some exceptions exist, namely Girella elevata, which may posses behavioural adaptations to cope with harsh environmental conditions.

Australian diadromous fishes ) challenges and solutions for understanding migrations in the 21st century

Diadromous fishes are a frequent but poorly understood component of coastal riverine fish communities in Australia. There are ~33 diadromous fishes found in Australian waters, mainly catadromous and amphidromous species. An extensive review of the literature identified major information gaps about the lifecycles and ecology of many of these species, with information on facultative diadromy, navigation, marine and early life stages being particularly limited. In many cases, this lack of information has led to poor management decisions and consequently many of the Australian diadromous species are under increasing threat from a range of environmental impacts. Much of the required information is difficult to obtain with traditional field surveys and, as a result, new and improved research tools and technologies, including telemetry, otolith chemistry, stable-isotope analysis (SIA) and functional magnetic resonance imaging (fMRI) are increasingly being applied. Key areas for research on Australian diadromous fishes should involve: (1) use of telemetry and otolith chemistry to determine the level of facultative diadromy and variation in diadromous movements across a species range; (2) use of otolith chemistry and SIA to gain a greater understanding of larval and juvenile marine life stages of catadromous and amphidromous species; and (3) use of fMRI or traditional techniques such as electroolfactogram (EOG) to determine the role of olfaction in spawning and migration, and the impact of impoundments and agricultural run-off on these critical life history stages.

Diagenetic stoichiometry and benthic nutrient fluxes at the sediment–water interface of Lake Illawarra, Australia

Benthic flux measurements of O2, TCO2 and inorganic nutrients were made at three stations (seagrass beds, shallow bare sand and deep mud) in Lake Illawarra (Australia) to compare the characteristics of diagenesis and benthic biogeochemical processes for different primary producers (seagrass or microphytobenthos, (MPB)) and/or sediment types (sand or mud).Seagrass beds exhibited the highest gross primary productivity while the lowest rates occurred at the deep mud station. At the shallow bare sand station only, the gross primary production (GPP) and respiration (R) were balanced, while at the other two stations, R exceeded GPP by as much as 2 fold, indicating more organic carbon was decomposed than produced at the time of sampling. In general, nutrient fluxes displayed typical diurnal variation.Organic carbon oxidation scenarios, evaluated by either calcium carbonate dissolution or sulfate reduction models, indicated that both models can represent organic matter mineralization. The difference of estimated total carbon oxidized in this lake using the two models was small, ranging from 0.2% at deep mud station to maximum of 21% at seagrass station. In addition, N2 flux rates (net denitrification), estimated using carbon and nitrogen stoichiometry, were of similar magnitude as the rates estimated using LOICZ budget modeling or measured using the N2/Ar technique.Finally, a comparison of calculated diffusive fluxes and measured fluxes using incubation cores indicated that the results were of similar magnitude at the deep mud station, but the incubation cores fluxes were much higher than the calculated diffusive fluxes at the other two stations. This may have been caused by bioturbation or bioirrigation.