Raf De Dier

Auto-production of biosurfactants reverses the coffee ring effect in a bacterial system

The deposition of material at the edge of evaporating droplets, known as the ‘coffee ring effect’, is caused by a radially outward capillary flow. This phenomenon is common to a wide array of systems including colloidal and bacterial systems. The role of surfactants in counteracting these coffee ring depositions is related to the occurrence of local vortices known as Marangoni eddies. Here we show that these swirling flows are universal, and not only lead to a uniform deposition of colloids but also occur in living bacterial systems. Experiments on Pseudomonas aeruginosa suggest that the auto-production of biosurfactants has an essential role in creating a homogeneous deposition of the bacteria upon drying. Moreover, at biologically relevant conditions, intricate time-dependent flows are observed in addition to the vortex regime, which are also effective in reversing the coffee ring effect at even lower surfactant concentrations.

Combing of Genomic DNA from Droplets Containing Picograms of Material

Deposition of linear DNA molecules is a critical step in many single-molecule genomic approaches including DNA mapping, fiber-FISH, and several emerging sequencing technologies. In the ideal situation, the DNA that is deposited for these experiments is absolutely linear and uniformly stretched, thereby enabling accurate distance measurements. However, this is rarely the case, and furthermore, current approaches for the capture and linearization of DNA on a surface tend to require complex surface preparation and large amounts of starting material to achieve genomic-scale mapping. This makes them technically demanding and prevents their application in emerging fields of genomics, such as single-cell based analyses. Here we describe a simple and extremely efficient approach to the deposition and linearization of genomic DNA molecules. We employ droplets containing as little as tens of picograms of material and simply drag them, using a pipet tip, over a polymer-coated coverslip. In this report we highlight one particular polymer, Zeonex, which is remarkably efficient at capturing DNA. We characterize the method of DNA capture on the Zeonex surface and find that the use of droplets greatly facilitates the efficient deposition of DNA. This is the result of a circulating flow in the droplet that maintains a high DNA concentration at the interface of the surface/solution. Overall, our approach provides an accessible route to the study of genomic structural variation from samples containing no more than a handful of cells.

Thermocapillary Fingering in Surfactant-Laden Water Droplets

The drying of sessile droplets represents an intriguing problem, being a simple experiment to perform but displaying complexities that are archetypical for many free surface and coating flows. Drying can leave behind distinct deposits of initially well dispersed colloidal matter. For example, in the case of the coffee ring effect, particles are left in a well-defined macroscopic pattern with particles accumulating at the edge, controlled by the internal flow in the droplet. Recent studies indicate that the addition of surfactants strongly influences this internal flow field, even reversing it and suppressing the coffee ring effect. In this work, we explore the behavior of droplets at high surfactant loadings and observe unexpected outward fingering instabilities. The experiments start out with droplets with a pinned contact line, and fast confocal microscopy is used to quantify a radially outward surfactant-driven Marangoni flow, in line with earlier observations. However, the Marangoni flows are observed to become unstable, and local vortex cells are now observed in a direction along the contact line. The occurrence of these vortices cannot be explained on the basis of the effects of surfactants alone. Thermal imaging shows that thermocapillary effects are superimposed on the surfactant-driven flows. These local vortex cells acts as little pumps and push the fluid outward in a fingering instability, rather than an expected inward retraction of the drying droplet. This leads to a deposition of colloids in a macroscopical flower-shaped pattern. A scaling analysis is used to rationalize the observed wavelengths and velocities, and practical implications are briefly discussed.

Adsorption of Ellipsoidal Particles at Liquid–Liquid Interfaces

The adsorption of particles at liquid-liquid interfaces is of great scientific and technological importance. In particular, for nonspherical particles, the capillary forces that drive adsorption vary with position and orientation, and complex adsorption pathways have been predicted by simulations. On the basis of the latter, it has been suggested that the timescales of adsorption are determined by a balance between capillary and viscous forces. However, several recent experimental results point out the role of contact line pinning in the adsorption of particles to interfaces and even suggest that the adsorption dynamics and pathways are completely determined by the latter, with the timescales of adsorption being determined solely by particle characteristics. In the present work, the adsorption trajectories of model ellipsoidal particles are investigated experimentally using cryo-SEM and by monitoring the altitudinal orientation angle using high-speed confocal microscopy. By varying the viscosity and the viscosity jump across the interfaces, we specifically interrogate the role of viscous forces.

The role of biosurfactants in bacterial systems

The complex biochemistry inside bacterial systems results in the production of several species of molecules with complex composition and architecture. This architecture may have a specific biological role, but often also entails a significant surface activity of the molecules. For example, in the important process of quorum sensing, small chemical molecules are secreted by bacteria to achieve a basic form of communication between individual cells. Compounds such as peptides in Gram-positive bacteria and N-Acyl Homoserine Lactones (AHL) in Gram-negative bacteria [1] are continuously produced by these organisms. As the population grows, these signaling molecules reach a threshold concentration and trigger changes within a cell regarding gene expression, enzyme activity, secretion, and many other behaviors [2, 3]. However, among these secretion products are often surface active agents, or surfactants in short, as produced by bacterial systems such as Bacillus subtilis, Escherichia coli, Rhizobium etli, Proteus mirabilis and rhamnolipids in Pseudomonas aeruginosa [4, 5].