Rafal Baranski

The Content of Phenolic Compounds and Radical Scavenging Activity Varies with Carrot Origin and Root Color

The contents of phenolic compounds and radical scavenging activities were assessed in a carrot collection comprising 35 cultivars, landraces and breeding populations. The accessions originated from various world regions and they represented Eastern and Western carrot gene pools. In two-year field trial carrot roots of orange, red, yellow, white and purple color were cultivated, freeze-dried and analyzed for phenolic content by Folin-Ciocalteu assay and UV/Vis assay. Radical scavenging activity in the extracts was determined with a stable DPPH radical. Carrots developing purple roots possessed on average 9 times more phenolics than roots of other colors. Furthermore, they were rich in anthocyanins that caused very high antiradical activity. Red carrots showed higher antioxidant activity than orange, yellow and white carrots and in the season of lower rainfall they accumulated higher amounts of phenolic compounds. Carrots of Asian origin belonging to Eastern gene pool were more often purple or red and richer in phenolics and had higher antiradical activity than those from the Western gene pool with mainly orange roots.

Green fluorescent protein as an efficient selection marker for Agrobacterium rhizogenes mediated carrot transformation

Agrobacterium rhizogenes mediated transformation combined with a visual selection for green fluorescent protein (GFP) has been applied effectively in carrot (Daucus carota L.) transformation. Carrot root discs were inoculated with A4, A4T, LBA1334 and LBA9402 strains, all bearing gfp gene in pBIN-m-gfp5-ER. The results indicate that transformed adventitious roots can be visually selected solely based on GFP fluorescence with a very high accuracy. The method requires no selection agents like antibiotics or herbicides and enables a reduction of labour and time necessary for tissue culture. Moreover, individual transformants can be easily excised from the host tissue and cultured separately. All of the 12 used carrot cultivars produced transformed adventitious roots and the frequency of discs producing GFP expressing adventitious roots varied from 13 to 85%. The highest transformation rate was found for A4T and LBA1334 strains possessing chromosomal background of A. tumefaciens C58. The results encourage that visual selection of transformed, fluorescing adventitious roots can be highly effective and applied routinely for the production of carrot transgenic plants.

Genetic diversity of carrot (Daucus carota L.) cultivars revealed by analysis of SSR loci

Polymorphism of simple sequence repeat (SSR) loci was assessed in a collection of 88 carrot (Daucus carota L. subsp. sativus Hoffm.) accessions. The collection comprised cultivars and landraces mainly from Asia, Europe, and North America. Plants were grown in the glasshouse and characterized for root color and shape. Thirty SSR loci were fully characterized using parameters derived from allele frequencies, i.e. the number of total, effective and rare alleles, the observed and expected heterozygosity, and fixation index. Using a Bayesian approach, two clusters of 17 and 61 accessions were distinguished, which comprised the Asian and Western type accessions, respectively. Genetic diversity of the Asian gene pool was higher than that of the Western gene pool. The results of SSR analysis were supported by morphological characterization, and are congruent with current knowledge on the history of carrot domestication and breeding.

Recent Advances in Raman Analysis of Plants: Alkaloids, Carotenoids, and Polyacetylenes

This paper demonstrates the special potential of Raman spectroscopy for the study of selected plant metabolites. Carotenoids, which are beneficial components in fruits and vegetables, have been shown to be a significant factor in lowering the risk of various types of cancer and ischemic heart diseases. On the other hand, alkaloids may have various effects on human health, e.g. caffeine is a mild stimulant of the central nervous system and as a result it can influence human behaviour. Polyacetylenes are highly cytotoxic against numerous cancer cell lines and demonstrate antifungal, anti-inflammatory and anti-platelet-aggregatory properties. In most cases, vibrational measurements can be performed directly on plant tissues as well as on fractions isolated from the plant material by hydro-distillation or solvent extraction. Raman spectroscopy techniques allow obtaining spectra which present some characteristic key bands of individual components. Based on such markers related to individual plant substances, spectroscopic analyses in principle allow the discrimination of different species, and even chemotypes among the same species. Moreover, Raman microspectroscopy provides 2- and 3-dimensional images of the investigated plant samples. These maps can be directly compared to the corresponding visual images obtained from a light microscope and offer additional detailed information regarding the local distribution of specific compounds in the surface layers of the analyzed plant tissue.

Spectroscopic Studies on Bioactive Polyacetylenes and Other Plant Components in Wild Carrot Root

Polyacetylenes and other common plant components, such as starch, pectin, cellulose, and lignin, were studied in roots of the wild carrot (Daucus carota) subspecies D. carota subsp. gummifer and D. carota subsp. maximus by Raman spectroscopy. The components were measured in situ, directly in the plant tissue and without any preliminary sample preparation. The analysis was performed on the basis of the intense and characteristic key bands observed in the Raman spectrum. The two main carrot polyacetylenes falcarinol (1) and falcarindiol (2) have similar molecular structures, but their Raman spectra exhibit a small band shift in the symmetric -C≡C-C≡C- mode from 2258 cm⁻¹ to 2252 cm⁻¹. Quantum chemical calculations confirmed that the differences observed between the samples may be due to conformational and environmental changes. The polyacetylenes were also detected by Raman mapping, which visualized the distribution of the compounds across sections of carrot roots. The mapping technique was also applied to assess the distribution of lignin and polysaccharide compounds. The results showed the tissue-specific accumulation of starch and cell wall components such as lignin, pectin, and cellulose.

Raman Analysis of Caraway (Carum carvi L.) Single Fruits. Evaluation of Essential Oil Content and Its Composition

FT-Raman spectroscopy was applied for in situ analysis of single and intact fruits obtained from a diverse caraway (Carum carvi L.) collection. The Raman spectra showed characteristic bands that could be assigned to lignin, unsaturated fatty acids, and polysaccharides. Additionally, the essential oil composition was determined by gas chromatography (GC), which showed a great variation in carvone and limonene content among accessions obtained from European botanical gardens as well as advanced breeding materials. GC data and information obtained from Raman measurements were correlated and allowed development of calibration models for essential oil yield and carvone and limonene content (R(2) = 74%, 81%, and 75%, respectively). The congruence between results obtained by both techniques indicates FT-Raman spectroscopy to be a valuable screening tool for quality control and selection of fruits with desired essential oil composition, which can be performed without fruit destruction.

Nondestructive Raman analysis of polyacetylenes in apiaceae vegetables.

Food plants from the Apiaceae family have been found to demonstrate health-promoting properties. Polyacetylenes are bioactive compounds that are considered to contribute substantially to the beneficial properties of Apiaceae plants. This study applied a Raman mapping technique in the investigation of polyacetylene spatial distribution in fresh roots of some Apiaceae species. Fresh root sections were measured directly without any preliminary preparation. For three Apiaceae species, that is, parsnip ( Pastinaca sativa L.), celeriac ( Apium graveolens var. rapaceum L.), and parsley ( Petroselinum crispum ), the presence of polyacetylenes was confirmed due to the detection of strong and well-separated Raman signals of symmetric -C ≡ C-C ≡ C- stretching vibration in the range of 2200-2300 cm(-1). The spectra were used for generation of two-dimensional maps applying the integration and cluster analysis methods. The Raman maps visualized the distribution of total polyacetylenes as well as individual compounds. Heterogeneous and tissue-specific occurrence of polyacetylenes in roots is shown.

Mapping genes governing flower architecture and pollen development in a double mutant population of carrot

A linkage map of carrot (Daucus carota L.) was developed in order to study reproductive traits. The F2 mapping population derived from an initial cross between a yellow leaf (yel) chlorophyll mutant and a compressed lamina (cola) mutant with unique flower defects of the sporophytic parts of male and female organs. The genetic map has a total length of 781 cM and included 285 loci. The length of the nine linkage groups (LGs) ranged between 65 and 145 cM. All LGs have been anchored to the reference map. The objective of this study was the generation of a well-saturated linkage map of D. carota. Mapping of the cola-locus associated with flower development and fertility was successfully demonstrated. Two MADS-box genes (DcMADS3, DcMADS5) with prominent roles in flowering and reproduction as well as three additional genes (DcAOX2a, DcAOX2b, DcCHS2) with further importance for male reproduction were assigned to different loci that did not co-segregate with the cola-locus.

Discrimination between Nongenetically Modified (Non-GM) and GM Plant Tissue Expressing Cysteine-Rich Polypeptide Using FT-Raman Spectroscopy

Fourier transform (FT)-Raman spectroscopy was applied to the analysis of genetically modified (GM) plant tissue. Transgenic carrot callus and tobacco plants possessing a novel StSn1 gene coding for a cysteine-rich snakin-1 polypeptide were obtained after Agrobacterium-mediated transformation. The presence of the StSn1 gene and its expression were confirmed by polymerase chain reactions using plant DNA and cDNA as templates for the amplification of the transgenes. Raman measurements were taken from lyophilized GM carrot callus tissue, fresh GM tobacco leaves, and from seeds produced by GM tobacco plants as well as from the nontransformed controls. Cluster analysis applied to the obtained spectra allowed clear separation of the GM samples expressing the StSn1 gene and the nontransformed control to distinct groups. Such discrimination was achieved only when wavenumber ranges around 500 cm (-1) were analyzed. The results indicate that discrimination between the GM and non-GM materials was related to S-S stretching vibrations in snakin-1, as it contained six sulfur bridges. Other introduced genes, neomycine phosphotransferase ( nptII) and Chitinase ( chit36), did not cause any detectable changes by Raman spectroscopy in plant tissue. This is the first report on the use of Raman spectroscopy for a nondestructive analysis of GM plant material expressing the gene coding for a cysteine-rich polypeptide.

Monitoring the expression of green fluorescent protein in carrot

Green fluorescent protein (GFP) was successfully used as a visual reporter at various stages of carrot (Daucus carota L.) transformation. GFP-fluorescence was non-invasively observed in protoplasts, callus and plants after the delivery of mgfp5-er gene using two transformation methods: direct DNA transfer into polyethylene glycol (PEG) -treated protoplasts and inoculation of root discs with Agrobacterium rhizogenes. Transient GFP-expression was detected in the treated protoplasts and monitored during the first week of the cell culture until the stable level of expression was observed. It was useful for the comparison of protoplast susceptibility to DNA uptake and the transgene expression as the fluorescence declined with various rates depending on the used carrot genotype and PEG-concentration. GFP-monitoring in callus enabled the selection of stably expressing lines. It also allowed verification of the homogeneous tissue composition with regard to the expression of the transgene. In plants, GFP-performance depended on the assayed tissue and organ despite of the constitutive 35S promoter. The expression was visually detected in both vegetative and generative parts, but particularly strong fluorescence was observed in leaf marginal meristems, petioles, stems, and styles. Those tissues can be convenient for examination of the transgenic plants during their growth. The results encourage that GFP is a valuable reporter and can be routinely used for optimization of transformation protocol, selection of transformants and monitoring transgenic carrot.