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Dive into the research topics where Rahul Thorat is active.

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Featured researches published by Rahul Thorat.


PLOS ONE | 2011

Lentiviral mediated transgenesis by in vivo manipulation of spermatogonial stem cells.

Lalit Sehgal; Rahul Thorat; Nileema Khapare; Amitabha Mukhopadhaya; Mugdha Sawant; Sorab N. Dalal

This report describes a technique for the generation of transgenic mice by in vivo manipulation of spermatogonial stem cells with a high rate of success. Spermatogonial stem cells (SSCs) in pre-pubescent animals were infected in vivo with recombinant lentiviruses expressing EGFP-f and mated with normal females. All male pre-founder mice produced transgenic pups with an overall success rate of over 60%. The transgene was heritable and the pre-founder mice could be used in multiple mating experiments. This technology could be used to perform overexpression/knockdown screens in vivo using bar-coded lentiviruses, thus permitting the design of genetic screens in the mouse. Further, this technology could be adapted to other laboratory animals resulting in the generation of model systems that closely approximate human development and disease.


Journal of Cell Science | 2014

14-3-3γ-mediated transport of plakoglobin to the cell border is required for the initiation of desmosome assembly in vitro and in vivo

Lalit Sehgal; Amitabha Mukhopadhyay; Anandi Rajan; Nileema Khapare; Mugdha Sawant; Sonali S. Vishal; Khyati Bhatt; Srikant Ambatipudi; Noelle Antao; Hunain Alam; Mansa Gurjar; Srikanta Basu; Rohit Mathur; Lalit Borde; Amol S. Hosing; Milind M. Vaidya; Rahul Thorat; Felipe Samaniego; Ullas Kolthur-Seetharam; Sorab N. Dalal

ABSTRACT The regulation of cell–cell adhesion is important for the processes of tissue formation and morphogenesis. Here, we report that loss of 14-3-3&ggr; leads to a decrease in cell–cell adhesion and a defect in the transport of plakoglobin and other desmosomal proteins to the cell border in HCT116 cells and cells of the mouse testis. 14-3-3&ggr; binds to plakoglobin in a PKC&mgr;-dependent fashion, resulting in microtubule-dependent transport of plakoglobin to cell borders. Transport of plakoglobin to the border is dependent on the KIF5B–KLC1 complex. Knockdown of KIF5B in HCT116 cells, or in the mouse testis, results in a phenotype similar to that observed upon 14-3-3&ggr; knockdown. Our results suggest that loss of 14-3-3&ggr; leads to decreased desmosome formation and a decrease in cell–cell adhesion in vitro, and in the mouse testis in vivo, leading to defects in testis organization and spermatogenesis.


PLOS ONE | 2015

MMP7 Is Required to Mediate Cell Invasion and Tumor Formation upon Plakophilin3 Loss

Srikanta Basu; Rahul Thorat; Sorab N. Dalal

Plakophilin3 (PKP3) loss results in increased transformation in multiple cell lines in vitro and increased tumor formation in vivo. A microarray analysis performed in the PKP3 knockdown clones, identified an inflammation associated gene signature in cell lines derived from stratified epithelia as opposed to cell lines derived from simple epithelia. However, in contrast to the inflammation associated gene signature, the expression of MMP7 was increased upon PKP3 knockdown in all the cell lines tested. Using vector driven RNA interference, it was demonstrated that MMP7 was required for in-vitro cell migration and invasion and tumor formation in vivo. The increase in MMP7 levels was due to the increase in levels of the Phosphatase of Regenerating Liver3 (PRL3), which is observed upon PKP3 loss. The results suggest that MMP7 over-expression may be one of the mechanisms by which PKP3 loss leads to increased cell invasion and tumor formation.


PLOS ONE | 2017

Vimentin regulates differentiation switch via modulation of keratin 14 levels and their expression together correlates with poor prognosis in oral cancer patients

Crismita Dmello; Sharada Sawant; Hunain Alam; Prakash Gangadaran; Saie Mogre; Richa Tiwari; Zinia Charlotte D'Souza; Manish Narkar; Rahul Thorat; Komal Patil; Devendra Chaukar; Shubhada Kane; Milind M. Vaidya

Vimentin is an intermediate filament protein, predominantly expressed in cells of mesenchymal origin, although its aberrant expression is seen in many carcinomas during epithelial mesenchymal transition. In cancer, vimentin expression is associated with the transition from a more differentiated epithelial phenotype to a dedifferentiated state. In view of the perceived role of keratins (Ks) as regulators of differentiation in epithelia, it was important to understand whether vimentin modulates differentiation through the reprogramming of keratins, in transformed cells. To address this, vimentin was stably downregulated in oral cancer derived cells. Further, global keratin profiling was performed after high salt keratin extraction. K5/K14 pair was found to be significantly downregulated, both at protein and mRNA levels upon vimentin downregulation. The previous study from our laboratory has shown a role of the K5/K14 pair in proliferation and differentiation of squamous epithelial cells. Vimentin depleted cells showed an increase in the differentiation state, marked by an increase in the levels of differentiation specific markers K1, involucrin, filaggrin and loricrin while its proliferation status remained unchanged. Rescue experiments with the K5/K14 pair overexpressed in vimentin knockdown background resulted in decreased differentiation state. ΔNp63 emerged as one of the indirect targets of vimentin, through which it modulates the expression levels of K5/K14. Further, immunohistochemistry showed a significant correlation between high vimentin-K14 expression and recurrence/poor survival in oral cancer patients. Thus, in conclusion, vimentin regulates the differentiation switch via modulation of K5/K14 expression. Moreover, vimentin-K14 together may prove to be the novel markers for the prognostication of human oral cancer.


Scientific Reports | 2016

14-3-3γ Prevents Centrosome Amplification and Neoplastic Progression

Amitabha Mukhopadhyay; Lalit Sehgal; Arunabha Bose; Anushree Gulvady; Parijat Senapati; Rahul Thorat; Srikanta Basu; Khyati Bhatt; Amol S. Hosing; Renu Balyan; Lalit Borde; Tapas K. Kundu; Sorab N. Dalal

More than 80% of malignant tumors show centrosome amplification and clustering. Centrosome amplification results from aberrations in the centrosome duplication cycle, which is strictly coordinated with DNA-replication-cycle. However, the relationship between cell-cycle regulators and centrosome duplicating factors is not well understood. This report demonstrates that 14-3-3γ localizes to the centrosome and 14-3-3γ loss leads to centrosome amplification. Loss of 14-3-3γ results in the phosphorylation of NPM1 at Thr-199, causing early centriole disjunction and centrosome hyper-duplication. The centrosome amplification led to aneuploidy and increased tumor formation in mice. Importantly, an increase in passage of the 14-3-3γ-knockdown cells led to an increase in the number of cells containing clustered centrosomes leading to the generation of pseudo-bipolar spindles. The increase in pseudo-bipolar spindles was reversed and an increase in the number of multi-polar spindles was observed upon expression of a constitutively active 14-3-3-binding-defective-mutant of cdc25C (S216A) in the 14-3-3γ knockdown cells. The increase in multi-polar spindle formation was associated with decreased cell viability and a decrease in tumor growth. Our findings uncover the molecular basis of regulation of centrosome duplication by 14-3-3γ and inhibition of tumor growth by premature activation of the mitotic program and the disruption of centrosome clustering.


Molecular Carcinogenesis | 2017

Polymeric black tea polyphenols (PBPs) inhibit benzo(a)pyrene and 4-(methylnitrosamino)-1-(3-pyridyl)-1- butanone-induced lung carcinogenesis potentially through down-regulation of p38 and Akt phosphorylation in A/J mice.

Rasika R. Hudlikar; Varadha Balaji Venkadakrishnan; Rajiv Kumar; Rahul Thorat; Sadhana Kannan; Arvind Ingle; Saral Desai; Girish B. Maru; Manoj B. Mahimkar

The aim of our study was to evaluate chemopreventive efficacy and possible mechanism of most abundant polyphenolic fraction in black tea, polymeric black tea polyphenols (PBPs), in experimental lung carcinogenesis model. Effect of 1.5% black tea derived PBPs on benzo(a)pyrene [B(a)P] and 4‐(methylnitrosamino)‐1‐(3‐pyridyl)‐1‐butanone (NNK) induced lung lesions were studied over 28 wks. Chemopreventive efficacy was studied using decrease in tumor incidence and/or multiplicity and/or delay in the latency period in A/J mice. Histopathological analysis of lung was carried out post‐carcinogen treatment weeks to analyze the microscopic lung lesions. Inflammation, cell proliferation, and apoptosis markers along with signaling kinases like p38, Akt, and their phosphorylated forms were studied using immunoblotting and immunohistochemistry at 4th, 10th, and 18th wk post‐carcinogen treatment. Administration of PBPs throughout the treatment period significantly decreased the multiplicity of surface tumors as well as microscopic lung lesions, including adenomas. Although tumor incidence and latency period remains unaffected, histopathological evaluation of lung at 6, 10, and 18 wks post‐ carcinogen treatment period showed decrease in tumor multiplicity which was also correlated with different molecular markers. Anti‐ inflammatory action of PBPs was demonstrated by reduced Cox‐2 expression. PBPs down‐regulated the B(a)P and NNK‐induced cell proliferation (diminished PCNA expression, proliferation index, and Bcl‐2 expression) and enhanced apoptosis (increased Bax expression and apoptotic index) potentially through phosphorylation of p38 and Akt. PBPs, most abundant polyphenolic component in the black tea, have chemopreventive effect through inhibition of inflammation, cellular proliferation, and induction of apoptosis possibly via modulation of signaling kinases.


International Journal of Cancer | 2018

ERBB2 and KRAS Alterations Mediate Response to EGFR Inhibitors in Early Stage Gallbladder Cancer: A Promising Targeted Therapy in Gallbladder Cancer

Prajish Iyer; Shailesh V. Shrikhande; Malika Ranjan; Asim Joshi; Nilesh Gardi; Ratnam Prasad; Bhasker Dharavath; Rahul Thorat; Sameer Salunkhe; Bikram Sahoo; Pratik Chandrani; Hitesh Kore; Bhabani S. Mohanty; Vikram Chaudhari; Anuradha Choughule; Dhananjay Kawle; Pradip Chaudhari; Arvind Ingle; Shripad Banavali; Poonam Gera; Mukta Ramadwar; Kumar Prabhash; Savio George Barreto; Shilpee Dutt; Amit Dutt

The uncommonness of gallbladder cancer in the developed world has contributed to the generally poor understanding of the disease. Our integrated analysis of whole exome sequencing, copy number alterations, immunohistochemical, and phospho‐proteome array profiling indicates ERBB2 alterations in 40% early‐stage rare gallbladder tumors, among an ethnically distinct population not studied before, that occurs through overexpression in 24% (n = 25) and recurrent mutations in 14% tumors (n = 44); along with co‐occurring KRAS mutation in 7% tumors (n = 44). We demonstrate that ERBB2 heterodimerizes with EGFR to constitutively activate the ErbB signaling pathway in gallbladder cells. Consistent with this, treatment with ERBB2‐specific, EGFR‐specific shRNA or with a covalent EGFR family inhibitor Afatinib inhibits tumor‐associated characteristics of the gallbladder cancer cells. Furthermore, we observe an in vivo reduction in tumor size of gallbladder xenografts in response to Afatinib is paralleled by a reduction in the amounts of phospho‐ERK, in tumors harboring KRAS (G13D) mutation but not in KRAS (G12V) mutation, supporting an essential role of the ErbB pathway. In overall, besides implicating ERBB2 as an important therapeutic target under neo‐adjuvant or adjuvant settings, we present the first evidence that the presence of KRAS mutations may preclude gallbladder cancer patients to respond to anti‐EGFR treatment, similar to a clinical algorithm commonly practiced to opt for anti‐EGFR treatment in colorectal cancer.


FEBS Journal | 2018

Depletion of keratin 8/18 modulates oncogenic potential by governing multiple signaling pathways

Richa Tiwari; Indrajit Sahu; Bihari Lal Soni; Gajanan Sathe; Pankaj Thapa; Pavan Patel; Shruti Sinha; Chella Krishna Vadivel; Shweta Patel; Sayli Jamghare; Swapnil Oak; Rahul Thorat; Harsha Gowda; Milind M. Vaidya

Keratin 8/18, the predominant keratin pair of simple epithelia, is often aberrantly expressed in various squamous cell carcinomas (SCCs) including skin SCC. Its aberrant expression is correlated with increased invasiveness and poor prognosis of the same, although the underlying mechanism is still unclear. A previous report from our laboratory has shown K8‐mediated regulation of α6β4 integrin signaling and thereby tumorigenic potential of oral SCC‐derived cells. Another study on transgenic mouse model has shown that during skin carcinogenesis, K8 favors conversion of papillomas toward malignancy. In order to understand the role of K8 and allied mechanism in skin SCC, K8 was stably knocked down in a skin epidermoid carcinoma‐derived A431 cells. K8 downregulation significantly reduced the tumorigenic potential of these cells. In agreement with our phenotypic data, differential quantitative proteomics followed by IPA analysis showed altered expression of many proteins associated with biological functions including ‘Cancer’, ‘Cellular movement’, ‘Cell death and survival’, and ‘Cellular morphology’. Some of these proteins were TMS1, MARCKSL1, RanBP1, 14‐3‐3γ, Rho‐GDI2, etc. Furthermore, to our surprise, there was a significant reduction in K17 protein stability upon loss of K8, probably due to its caspase‐mediated degradation. This was supported by altered TMS1‐NF‐κB signaling, leading to increased apoptotic sensitivity of A431 cells which in turn affected ‘Cell death and survival’. Moreover, MARCKSL1‐Paxillin1‐Rac axis was found to be deregulated bestowing a possible mechanism behind altered ‘Cellular movement’ pathway. Altogether our study unravels a much broader regulatory role of K8, governing multiple signaling pathways and consequently regulating oncogenic potential of skin SCC‐derived cells.


Experimental Cell Research | 2018

Plakophilin3 loss leads to an increase in lipocalin2 expression, which is required for tumour formation

Srikanta Basu; Nazia Chaudhary; Sanket Shah; Carol Braggs; Aakanksha Sawant; Simone Vaz; Rahul Thorat; Sanjay Gupta; Sorab N. Dalal

Abstract An increase in tumour formation and metastasis are observed upon plakophilin3 (PKP3) loss. To identify pathways downstream of PKP3 loss that are required for increased tumour formation, a gene expression analysis was performed, which demonstrated that the expression of lipocalin2 (LCN2) was elevated upon PKP3 loss and this is consistent with expression data from human tumour samples suggesting that PKP3 loss correlates with an increase in LCN2 expression. PKP3 loss leads to an increase in invasion, tumour formation and metastasis and these phenotypes were dependent on the increase in LCN2 expression. The increased LCN2 expression was due to an increase in the activation of p38 MAPK in the HCT116 derived PKP3 knockdown clones as LCN2 expression decreased upon inhibition of p38 MAPK. The phosphorylated active form of p38 MAPK is translocated to the nucleus upon PKP3 loss and is dependent on complex formation between p38 MAPK and PKP3. WT PKP3 inhibits LCN2 reporter activity in PKP3 knockdown cells but a PKP3 mutant that fails to form a complex with p38 MAPK cannot suppress LCN2 promoter activity. Further, LCN2 expression is decreased upon loss of p38&bgr;, but not p38&agr;, in the PKP3 knockdown cells. These results suggest that PKP3 loss leads to an increase in the nuclear translocation of p38 MAPK and p38&bgr; MAPK is required for the increase in LCN2 expression. HighlightsPlakophilin3 loss leads to an increase in LCN2 expression in multiple cell types.The increase in LCN2 expression is dependent on the activity of p38 MAPK.Plakophilin3 inhibits LCN2 expression by restricting p38 MAPK to the cytoplasm.The increase in LCN2 expression is required for tumour formation upon plakophilin3 loss.


Protocol exchange | 2012

Cryopreservation of Mouse Preimplantation Embryos by Slow freezing and Fast thawing Method

Rahul Thorat; Arvind Ingle

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Lalit Sehgal

University of Texas MD Anderson Cancer Center

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Srikanta Basu

Homi Bhabha National Institute

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Milind M. Vaidya

Homi Bhabha National Institute

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Hunain Alam

University of Texas MD Anderson Cancer Center

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