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Dive into the research topics where Rajdeep Das is active.

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Featured researches published by Rajdeep Das.


Oncogene | 2017

A ZEB1-miR-375-YAP1 pathway regulates epithelial plasticity in prostate cancer

Luke A. Selth; Rajdeep Das; Scott L. Townley; Isabel Coutinho; Adrienne R. Hanson; Margaret M. Centenera; Nataly Stylianou; Katrina Sweeney; Carolina Soekmadji; Lidija Jovanovic; Colleen C. Nelson; Amina Zoubeidi; Lisa M. Butler; Gregory J. Goodall; Brett G. Hollier; Philip A. Gregory; Wayne D. Tilley

MicroRNA-375 (miR-375) is frequently elevated in prostate tumors and cell-free fractions of patient blood, but its role in genesis and progression of prostate cancer is poorly understood. In this study, we demonstrated that miR-375 is inversely correlated with epithelial–mesenchymal transition signatures (EMT) in clinical samples and can drive mesenchymal–epithelial transition (MET) in model systems. Indeed, miR-375 potently inhibited invasion and migration of multiple prostate cancer lines. The transcription factor YAP1 was found to be a direct target of miR-375 in prostate cancer. Knockdown of YAP1 phenocopied miR-375 overexpression, and overexpression of YAP1 rescued anti-invasive effects mediated by miR-375. Furthermore, transcription of the miR-375 gene was shown to be directly repressed by the EMT transcription factor, ZEB1. Analysis of multiple patient cohorts provided evidence for this ZEB1-miR-375-YAP1 regulatory circuit in clinical samples. Despite its anti-invasive and anti-EMT capacities, plasma miR-375 was found to be correlated with circulating tumor cells in men with metastatic disease. Collectively, this study provides new insight into the function of miR-375 in prostate cancer, and more broadly identifies a novel pathway controlling epithelial plasticity and tumor cell invasion in this disease.


Cancer Discovery | 2017

Analysis of circulating cell-free DnA identifies multiclonal heterogeneity of BRCA2 reversion mutations associated with resistance to PARP inhibitors

David A. Quigley; Joshi J. Alumkal; Alexander W. Wyatt; Vishal Kothari; Adam Foye; Paul Lloyd; Rahul Aggarwal; Won Seog Kim; Eric Lu; Jacob Schwartzman; Kevin Beja; Matti Annala; Rajdeep Das; Morgan E. Diolaiti; Colin C. Pritchard; George Thomas; Scott A. Tomlins; Karen E. Knudsen; Christopher J. Lord; Charles J. Ryan; Jack F. Youngren; Tomasz M. Beer; Alan Ashworth; Eric J. Small; Felix Y. Feng

Approximately 20% of metastatic prostate cancers harbor mutations in genes required for DNA repair by homologous recombination repair (HRR) such as BRCA2 HRR defects confer synthetic lethality to PARP inhibitors (PARPi) such as olaparib and talazoparib. In ovarian or breast cancers, olaparib resistance has been associated with HRR restoration, including by BRCA2 mutation reversion. Whether similar mechanisms operate in prostate cancer, and could be detected in liquid biopsies, is unclear. Here, we identify BRCA2 reversion mutations associated with olaparib and talazoparib resistance in patients with prostate cancer. Analysis of circulating cell-free DNA (cfDNA) reveals reversion mutation heterogeneity not discernable from a single solid-tumor biopsy and potentially allows monitoring for the emergence of PARPi resistance.Significance: The mechanisms of clinical resistance to PARPi in DNA repair-deficient prostate cancer have not been described. Here, we show BRCA2 reversion mutations in patients with prostate cancer with metastatic disease who developed resistance to talazoparib and olaparib. Furthermore, we show that PARPi resistance is highly multiclonal and that cfDNA allows monitoring for PARPi resistance. Cancer Discov; 7(9); 999-1005. ©2017 AACR.See related commentary by Domchek, p. 937See related article by Kondrashova et al., p. 984See related article by Goodall et al., p. 1006This article is highlighted in the In This Issue feature, p. 920.


Cancer Research | 2017

MicroRNA-194 promotes prostate cancer metastasis by inhibiting SOCS2

Rajdeep Das; Philip A. Gregory; Rayzel Fernandes; Iza Denis; Qingqing Wang; Scott L. Townley; Shuang G. Zhao; Adrienne R. Hanson; Marie A. Pickering; Heather K. Armstrong; Noor A. Lokman; Esmaeil Ebrahimie; Elai Davicioni; Robert B. Jenkins; R. Jeffrey Karnes; Ashley E. Ross; Robert B. Den; Eric A. Klein; Kim N. Chi; Hayley S. Ramshaw; Elizabeth D. Williams; Amina Zoubeidi; Gregory J. Goodall; Felix Y. Feng; Lisa M. Butler; Wayne D. Tilley; Luke A. Selth

Serum levels of miR-194 have been reported to predict prostate cancer recurrence after surgery, but its functional contributions to this disease have not been studied. Herein, it is demonstrated that miR-194 is a driver of prostate cancer metastasis. Prostate tissue levels of miR-194 were associated with disease aggressiveness and poor outcome. Ectopic delivery of miR-194 stimulated migration, invasion, and epithelial-mesenchymal transition in human prostate cancer cell lines, and stable overexpression of miR-194 enhanced metastasis of intravenous and intraprostatic tumor xenografts. Conversely, inhibition of miR-194 activity suppressed the invasive capacity of prostate cancer cell lines in vitro and in vivo Mechanistic investigations identified the ubiquitin ligase suppressor of cytokine signaling 2 (SOCS2) as a direct, biologically relevant target of miR-194 in prostate cancer. Low levels of SOCS2 correlated strongly with disease recurrence and metastasis in clinical specimens. SOCS2 downregulation recapitulated miR-194-driven metastatic phenotypes, whereas overexpression of a nontargetable SOCS2 reduced miR-194-stimulated invasion. Targeting of SOCS2 by miR-194 resulted in derepression of the oncogenic kinases FLT3 and JAK2, leading to enhanced ERK and STAT3 signaling. Pharmacologic inhibition of ERK and JAK/STAT pathways reversed miR-194-driven phenotypes. The GATA2 transcription factor was identified as an upstream regulator of miR-194, consistent with a strong concordance between GATA2 and miR-194 levels in clinical specimens. Overall, these results offer new insights into the molecular mechanisms of metastatic progression in prostate cancer. Cancer Res; 77(4); 1021-34. ©2016 AACR.


Trends in Molecular Medicine | 2014

Epithelial plasticity in prostate cancer: principles and clinical perspectives

Rajdeep Das; Philip A. Gregory; Brett G. Hollier; Wayne D. Tilley; Luke A. Selth

Over the past decade, the capacity of cancer cells to oscillate between epithelial and mesenchymal phenotypes, termed epithelial plasticity (EP), has been demonstrated to play a critical role in metastasis. This phenomenon may be particularly important for prostate cancer (PC) progression, since recent studies have revealed interplay between EP and signaling by the androgen receptor (AR) oncoprotein. Moreover, EP appears to play a role in dictating the response to therapies for metastatic PC. This review will evaluate preclinical and clinical evidence for the relevance of EP in PC progression and consider the potential of targeting and measuring EP as a means to treat and manage lethal forms of the disease.


Oncogene | 2017

Neuropilin-1 is upregulated in the adaptive response of prostate tumors to androgen-targeted therapies and is prognostic of metastatic progression and patient mortality

Brian Wan-Chi Tse; Marianna Volpert; Ellca Ratther; Nataly Stylianou; Mannan Nouri; K McGowan; Melanie Lehman; Stephen McPherson; Mani Roshan-Moniri; M S Butler; C.Y. Gregory-Evans; Jacqui A. McGovern; Rajdeep Das; Mandeep Takhar; Nicholas Erho; Mohammed Alshalafa; Elai Davicioni; Edward M. Schaeffer; Robert B. Jenkins; Ashley E. Ross; R.J. Karnes; Robert B. Den; Ladan Fazli; Philip A. Gregory; Martin Gleave; Elizabeth D. Williams; Paul S. Rennie; Ralph Buttyan; Jennifer H. Gunter; Luke A. Selth

Recent evidence has implicated the transmembrane co-receptor neuropilin-1 (NRP1) in cancer progression. Primarily known as a regulator of neuronal guidance and angiogenesis, NRP1 is also expressed in multiple human malignancies, where it promotes tumor angiogenesis. However, non-angiogenic roles of NRP1 in tumor progression remain poorly characterized. In this study, we define NRP1 as an androgen-repressed gene whose expression is elevated during the adaptation of prostate tumors to androgen-targeted therapies (ATTs), and subsequent progression to metastatic castration-resistant prostate cancer (mCRPC). Using short hairpin RNA (shRNA)-mediated suppression of NRP1, we demonstrate that NRP1 regulates the mesenchymal phenotype of mCRPC cell models and the invasive and metastatic dissemination of tumor cells in vivo. In patients, immunohistochemical staining of tissue microarrays and mRNA expression analyses revealed a positive association between NRP1 expression and increasing Gleason grade, pathological T score, positive lymph node status and primary therapy failure. Furthermore, multivariate analysis of several large clinical prostate cancer (PCa) cohorts identified NRP1 expression at radical prostatectomy as an independent prognostic biomarker of biochemical recurrence after radiation therapy, metastasis and cancer-specific mortality. This study identifies NRP1 for the first time as a novel androgen-suppressed gene upregulated during the adaptive response of prostate tumors to ATTs and a prognostic biomarker of clinical metastasis and lethal PCa.


The Prostate | 2016

A Novel Class of Hsp90 C‐Terminal Modulators Have Pre‐Clinical Efficacy in Prostate Tumor Cells Without Induction of a Heat Shock Response

Heather K. Armstrong; Yen Chin Koay; Swati Irani; Rajdeep Das; Zeyad D. Nassar; Luke A. Selth; Margaret M. Centenera; Shelli R. McAlpine; Lisa M. Butler

While there is compelling rationale to use heat shock protein 90 (Hsp90) inhibitors for treatment of advanced prostate cancer, agents that target the N‐terminal ATP‐binding site of Hsp90 have shown little clinical benefit. These N‐terminal binding agents induce a heat shock response that activates compensatory heat shock proteins, which is believed to contribute in part to the agents’ lack of efficacy. Here, we describe the functional characterization of two novel agents, SM253 and SM258, that bind the N‐middle linker region of Hsp90, resulting in reduced client protein activation and preventing C‐terminal co‐chaperones and client proteins from binding to Hsp90.


Cancer Research | 2017

Novel Androgen Receptor Coregulator GRHL2 Exerts Both Oncogenic and Antimetastatic Functions in Prostate Cancer

Steve Paltoglou; Rajdeep Das; Scott L. Townley; Theresa E. Hickey; Gerard A. Tarulli; Isabel Coutinho; Rayzel Fernandes; Adrienne R. Hanson; Iza Denis; Jason S. Carroll; Scott M. Dehm; Ganesh V. Raj; Stephen R. Plymate; Wayne D. Tilley; Luke A. Selth

Alteration to the expression and activity of androgen receptor (AR) coregulators in prostate cancer is an important mechanism driving disease progression and therapy resistance. Using a novel proteomic technique, we identified a new AR coregulator, the transcription factor Grainyhead-like 2 (GRHL2), and demonstrated its essential role in the oncogenic AR signaling axis. GRHL2 colocalized with AR in prostate tumors and was frequently amplified and upregulated in prostate cancer. Importantly, GRHL2 maintained AR expression in multiple prostate cancer model systems, was required for cell proliferation, enhanced ARs transcriptional activity, and colocated with AR at specific sites on chromatin to regulate genes relevant to disease progression. GRHL2 is itself an AR-regulated gene, creating a positive feedback loop between the two factors. The link between GRHL2 and AR also applied to constitutively active truncated AR variants (ARV), as GRHL2 interacted with and regulated ARVs and vice versa. These oncogenic functions of GRHL2 were counterbalanced by its ability to suppress epithelial-mesenchymal transition and cell invasion. Mechanistic evidence suggested that AR assisted GRHL2 in maintaining the epithelial phenotype. In summary, this study has identified a new AR coregulator with a multifaceted role in prostate cancer, functioning as an enhancer of the oncogenic AR signaling pathway but also as a suppressor of metastasis-related phenotypes. Cancer Res; 77(13); 3417-30. ©2017 AACR.


Journal of the National Cancer Institute | 2018

The Immune Landscape of Prostate Cancer and Nomination of PD-L2 as a Potential Therapeutic Target

Shuang G. Zhao; Jonathan Lehrer; S. Laura Chang; Rajdeep Das; Nicholas Erho; Yang Liu; Martin Sjöström; Robert B. Den; Stephen J. Freedland; Eric A. Klein; R. Jeffrey Karnes; Edward M. Schaeffer; Melody J. Xu; Paul L. Nguyen; Ashley E. Ross; June M. Chan; Matthew R. Cooperberg; Peter R. Carroll; Elai Davicioni; Lawrence Fong; Daniel E. Spratt; Felix Y. Feng

BACKGROUND Immunotherapy has been less successful in treating prostate cancer than other solid tumors. We sought to better understand the immune landscape in prostate cancer and identify immune-related biomarkers and potential therapeutic targets. METHODS We analyzed gene expression data from 7826 prospectively collected prostatectomy samples (2013-2016), and 1567 retrospective samples with long-term clinical outcomes, for a total of 9393 samples, all profiled on the same commercial clinical platform in a CLIA-certified lab. The primary outcome was distant metastasis-free survival (DMFS). Secondary outcomes included biochemical recurrence-free survival (bRFS), prostate cancer-specific survival (PCSS), and overall survival (OS). All statistical tests were two-sided. RESULTS Unsupervised hierarchical clustering of hallmark pathways demonstrated an immune-related tumor cluster. Increased estimated immune content scores based on immune-specific genes from the literature were associated with worse bRFS (hazard ratio [HR] = 1.26 [95% confidence interval [CI] = 1.12 to 1.42]; P < .001), DMFS (HR = 1.34 [95% CI = 1.13 to 1.58]; P < .001), PCSS (HR = 1.53 [95% CI = 1.21 to 1.92]; P < .001), and OS (HR = 1.27 [95% CI = 1.07 to 1.50]; P = .006). Deconvolution using Cibersort revealed that mast cells, natural killer cells, and dendritic cells conferred improved DMFS, whereas macrophages and T-cells conferred worse DMFS. Interestingly, while PD-L1 was not prognostic, consistent with its low expression in prostate cancer, PD-L2 was expressed at statistically significantly higher levels (P < .001) and was associated with worse bRFS (HR = 1.17 [95% CI = 1.03 to 1.33]; P = .01), DMFS (HR = 1.25 [95% CI = 1.05 to 1.49]; P = .01), and PCSS (HR = 1.45 [95% CI = 1.13 to 1.86]; P = .003). PD-L2 was strongly associated with immune-related pathways on gene set enrichment analysis suggesting that it is playing an important role in immune modulation in clinical prostate cancer samples. Furthermore, PD-L2 was correlated with radiation response pathways, and also predicted response to postoperative radiation therapy (PORT) on multivariable interaction analysis (P = .03). CONCLUSION In the largest study of its kind to date, these results illustrate the complex relationship between the tumor-immune interaction, prognosis, and response to radiotherapy, and nominate PD-L2 as a potential novel therapeutic target in prostate cancer, potentially in combination with radiotherapy.


Cell | 2018

Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer

David A. Quigley; Ha X. Dang; Shuang G. Zhao; Paul Lloyd; Rahul Aggarwal; Joshi J. Alumkal; Adam Foye; Vishal Kothari; Marc D. Perry; Adina M. Bailey; Denise Playdle; Travis J. Barnard; Li Zhang; Jin Zhang; Jack F. Youngren; Marcin Cieslik; Abhijit Parolia; Tomasz M. Beer; George Thomas; Kim N. Chi; Martin Gleave; Nathan A. Lack; Amina Zoubeidi; Robert E. Reiter; Matthew Rettig; Owen N. Witte; Charles Ryan; Lawrence Fong; Won Seog Kim; Terence W. Friedlander


Molecular & Cellular Proteomics | 2018

Identification of Novel Response and Predictive Biomarkers to Hsp90 Inhibitors Through Proteomic Profiling of Patient-derived Prostate Tumor Explants

Elizabeth V. Nguyen; Margaret M. Centenera; Max Moldovan; Rajdeep Das; Swati Irani; Andrew Vincent; Howard Chan; Lisa G. Horvath; David J. Lynn; Roger J. Daly; Lisa M. Butler

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Philip A. Gregory

University of South Australia

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Elai Davicioni

University of Southern California

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Felix Y. Feng

University of California

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Robert B. Den

Thomas Jefferson University

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Ashley E. Ross

Johns Hopkins University

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