Rajvikram Singh

TeraVision: a distributed, scalable, high resolution graphics streaming system

In electronically mediated distance collaborations involving scientific data, there is often the need to stream the graphical output of individual computers or entire visualization clusters to remote displays. This work presents TeraVision as a scalable platform-independent solution which is capable of transmitting multiple synchronized high-resolution video streams between single workstations and/or clusters without requiring any modifications to be made to the source or destination machines. Issues addressed include: how to synchronize individual video streams to form a single larger stream; how to scale and route streams generated by an array of M/spl times/N nodes to fit a X/spl times/Y display; and how TeraVision exploits a variety of transport protocols. Results from experiments conducted over gigabit local-area networks and wide-area networks (between Chicago and Amsterdam), are presented. Finally, we propose the scalable adaptive graphics environment (SAGE) - an architecture to support future collaborative visualization environments with potentially billions of pixels.

The first functional demonstration of optical virtual concatenation as a technique for achieving terabit networking

The optical virtual concatenation (OVC) function of The Terabit LAN was demonstrated for the first time at the iGrid 2005 workshop in San Diego, California. The TERAbit-LAN establishes a lambda group path (LGP) for an application where the number of lambdas/L2 connections in a LGP can be specified by the application. Each LGP is logically treated as one end-to-end optical path, so during parallel transport, the LGP channels have no relative latency deviation. However, optical path diversity (e.g. restoration) can cause LGP relative latency deviations and negatively affect quality of service. OVC hardware developed by NTT compensates for relative latency deviations to achieve a virtual bulk transport for the Electronic Visualization Laboratorys (EVL) Scalable Adaptive Graphics Environment application.

Real-time multi-scale brain data acquisition, assembly, and analysis using an end-to-end OptIPuter

At iGrid 2005 we demonstrated the transparent operation of a biology experiment on a test-bed of globally distributed visualization, storage, computational, and network resources. These resources were bundled into a unified platform by utilizing dynamic lambda allocation, high bandwidth protocols for optical networks, a Distributed Virtual Computer (DVC) [N. Taesombut, A. Chien, Distributed Virtual Computer (DVC): Simplifying the development of high performance grid applications, in: Proceedings of the Workshop on Grids and Advanced Networks, GAN 04, Chicago, IL, April 2004 (held in conjunction with the IEEE Cluster Computing and the Grid (CCGrid2004) Conference)], and applications running over the Scalable Adaptive Graphics Environment (SAGE) [L. Renambot, A. Rao, R. Singh, B. Jeong, N. Krishnaprasad, V. Vishwanath, V. Chandrasekhar, N. Schwarz, A. Spale, C. Zhang, G. Goldman, J. Leigh, A. Johnson, SAGE: The Scalable Adaptive Graphics Environment, in: Proceedings of WACE 2004, 23-24 September 2004, Nice, France, 2004]. Using these layered technologies we ran a multi-scale correlated microscopy experiment [M.E. Maryann, T.J. Deerinck, N. Yamada, E. Bushong, H. Ellisman Mark, Correlated 3D light and electron microscopy: Use of high voltage electron microscopy and electron tomography for imaging large biological structures, Journal of Histotechnology 23 (3) (2000) 261-270], where biologists imaged samples with scales ranging from 20X to 5000X in progressively increasing magnification. This allows the scientists to zoom in from entire complex systems such as a rat cerebellum to individual spiny dendrites. The images used spanned multiple modalities of imaging and specimen preparation, thus providing context at every level and allowing the scientists to better understand the biological structures. This demonstration attempts to define an infrastructure based on OptIPuter components which would aid the development and design of collaborative scientific experiments, applications and test-beds and allow the biologists to effectively use the high resolution real estate of tiled displays.

Multiscale meta shape grammar objects for "...a grain of sand turns the balance" and ATLAS in silico

This aesthetically impelled work explores the use of dimensional glyphs generated by a custom meta-shape grammar algorithm to visually differentiate individual records from a massive meta-genomics dataset comprised of 17.4 million sequences and place them in a human context to reflect on the digitization of nature and culture. The Global Ocean Sampling Expedition, conducted by the J. Craig Venter Institute, studies genetics of communities of marine microorganisms throughout the worlds oceans, which sequester carbon from the atmosphere with potentially significant effects on global climate. The vast dataset contains DNA sequences, 17.4 million associated, predicted amino-acid sequences called ORFs (Open Reading Frames) along with a series of metadata descriptors.

The OptIPuter microscopy demonstrator: enabling science through a transatlantic lightpath.

The OptIPuter microscopy demonstrator project has been designed to enable concurrent and remote usage of world-class electron microscopes located in Oxford and San Diego. The project has constructed a network consisting of microscopes and computational and data resources that are all connected by a dedicated network infrastructure using the UK Lightpath and US Starlight systems. Key science drivers include examples from both materials and biological science. The resulting system is now a permanent link between the Oxford and San Diego microscopy centres. This will form the basis of further projects between the sites and expansion of the types of systems that can be remotely controlled, including optical, as well as electron, microscopy. Other improvements will include the updating of the Microsoft cluster software to the high performance computing (HPC) server 2008, which includes the HPC basic profile implementation that will enable the development of interoperable clients.