Ram C. Sharma

Global incidence of wheat rusts and powdery mildew during 1969-2010 and durability of resistance of winter wheat variety Bezostaya 1

Disease incidence and severity was studied for winter wheat variety Bezostaya 1 and susceptible checks based on data from international nurseries from 1969 to 2010 and from 51 countries across major winter wheat production regions totalling 1,047 reports. The frequency of leaf rust and stripe rust occurrence was stable over time with marked increases in severity in 2001–2010 especially in Europe and Central and West Asia. Substantial global reductions in stem rust occurrence were recorded and attributed primarily to use of resistance genes although the recent emergence of race Ug99 makes wheat more vulnerable. The occurrence of powdery mildew remained globally stable over time. It was the most important foliar disease in Western and Southern Europe, where the frequency was very high for all time periods coupled with slight increases in severity during 2001–2010. The durable resistance of variety Bezostaya 1 to all four diseases was demonstrated in the study using comparisons of disease severities of Bezostaya 1 and the most susceptible entries. The Lr34/Yr18/Pm38 pleiotrophic set possessed by Bezostaya 1 is currently an important target for selection because it is now amenable to molecular selection. Increased use of genes like Lr34 combined with strategies to minimize cultivation of extremely susceptible varieties will contribute to long term maintenance of low and non-damaging disease levels. The durable disease resistance of Bezostaya 1, combined with its adaptability and good end-use quality, was a significant reason for its huge impact in agriculture over the last 50xa0years.

Improving wheat stripe rust resistance in Central Asia and the Caucasus

Wheat is the most important cereal in Central Asia (Kazakhstan, Kyrgyzstan, Tajikistan, Turkmenistan and Uzbekistan) and the Caucasus (Armenia, Azerbaijan and Georgia). Stripe rust, caused by Puccinia striiformis f. sp. tritici is considered the most important disease of wheat in Central Asia and the Caucasus (CAC). Although stripe rust has been present in the region for a long time, it has become a serious constraint to wheat production in the past 10xa0years. This is reflected by the occurrence of five epidemics of stripe rust in the CAC region since 1999, the most recent in 2010. Several wheat varieties occupying substantial areas are either susceptible to stripe rust or possess a low level of resistance. Information on the stripe rust pathogen in terms of prevalent races and epidemiology is not readily available. Furthermore, there is an insufficient understanding of effective stripe rust resistance genes in the region, and little is known about the resistance genes present in the commercial varieties and advanced breeding lines. The deployment of resistant varieties is further complicated by putative changes in virulence in the pathogen population in different parts of the CAC. Twenty four out of 49 improved wheat lines received through international nurseries or other exchange programs showed high levels of resistance to stripe rust to local pathogen populations in 2009. Fifteen of the 24 stripe rust resistant lines also possessed resistance to powdery mildew. It is anticipated that this germplasm will play an important role in developing stripe rust resistant wheat varieties either through direct adoption or using them as parents in breeding programs.

The effect of spot blotch and heat stress on variation of canopy temperature depression, chlorophyll fluorescence and chlorophyll content of hexaploid wheat genotypes

Spot blotch, caused by Cochliobolus sativus (Ito and Kurib.) Drechsler ex Dastur, and heat stress are two important stresses of bread wheat (Triticum aestivum L.) causing substantial yield reduction in the warm areas of South Asia. These two stresses put pressure on at least 25 million hectares of wheat areas worldwide. This study was conducted to examine variation in physiological traits and its association with heat and spot blotch. Eleven diverse bread wheat genotypes were evaluated in replicated field trials under spot blotch epidemics and heat stress conditions in 2006 and 2007 at Rampur, Nepal. Canopy temperature depression (CTD), chlorophyll fluorescence (CF), chlorophyll content, percent disease leaf area, yield and yield components were recorded. Heat and spot blotch individually reduced CTD, CF, chlorophyll content, grain yield (GRY), and thousand kernel weight (TKW), with greater reductions recorded under combined stress. Genotypes showing lower GRY or TKW loss due to spot blotch also exhibited lower yield loss due to heat stress or combined heat and disease stress, suggesting an association between tolerance mechanisms to the stresses. The physiological traits chlorophyll content, CF and CTD showed higher correlations with GRY and TKW than with area under disease progress curve (AUDPC) suggesting their potential application in screening for heat and spot blotch tolerant genotypes. Genotypes with lower disease showed the highest values for chlorophyll content, CF and CTD. Our findings provide new information on the relationship of these physiological traits with spot blotch resistance and heat tolerance when examined in the same study. The physiological traits studied have potential application in integrative indirect selection criteria for improving spot botch and heat tolerance in wheat.

Improved winter wheat genotypes for Central and West Asia

High grain yield and resistance to stripe (yellow) rust are the most important traits for successful adoption of winter wheat varieties in Central and West Asia. This study was conducted to determine the stripe rust response and agronomic performance of a set of breeding lines recently developed by the International Winter Wheat Improvement Program (IWWIP). Replicated field studies were conducted in 2010 and 2011 using 38 experimental lines, one regional check (Konya) and one local check. Stripe rust scores were recorded at Karshi, Uzbekistan, and Karaj and Mashhad, Iran, in 2010. Grain yield was recorded at two sites each in Uzbekistan (Karshi and Kibray) and Iran (Karaj and Mashhad) and one site in Turkey (Eskisehir). The test lines showed variation for stripe rust severity, grain yield, 1,000-kernel weight, days to heading and plant height. Several stripe rust resistant genotypes were either higher yielding or equal to the local checks at different sites. Based on stripe rust resistance and yield performance in 2010, a set of 16 genotypes was selected and evaluated in 2011. All 16 were resistant at Almaty, Kazakhstan, and Dushanbe, Tajikistan, in 2011, whereas 9 of the 16 were resistant at Terter, Azerbaijan. The genotypes ‘TCI-02-138, ‘Solh’, ‘CMSS97M00541S’, ‘TCI -2-88(A)’ and ‘TCI-02-88(C)’ were consistently resistant to stripe across all sites in both years. Several lines showed high grain yields and superior agronomic performance across four sites in Uzbekistan and one site in Tajikistan. One genotype has been released in Uzbekistan and another in Tajikistan.

Breeding progress for yield in winter wheat genotypes targeted to irrigated environments of the CWANA region

The international winter wheat improvement program (IWWIP), an alliance between Turkey–CIMMYT–ICARDA, has distributed improved germplasm to different National Agricultural Research Systems (NARS) partners through international nurseries and yield trials for the last 25xa0years. This study was carried out in order to determine the rate of breeding progress for yield and yield related traits at IWWIP using data of the international winter wheat yield trials (IWWYT), IWWYT 1–13, collected from 1997 to 2010 in irrigated environments across different countries. The relative grain yield of the best line expressed as percent of the best check (Kinaci-97), widely grown cultivar (Bezostaya) and trial mean (TM) increased at a rate of 0.6, 1.6 and 0.2xa0%/year, each non-significant (Pxa0>xa00.05), respectively. Regression analysis indicated that TM has increased at a rate of 91.9xa0kg/ha/year (Pxa0=xa00.007). The net realized breeding progress was estimated by accounting the variability due to management and weather conditions using surrogate variables such as integrated biological indices taken as means of common checks. The net realized gain for the BL was 66.2xa0±xa019.7xa0kg/ha/year (Pxa0=xa00.01). Success rate of the BL, per cent of sites where the BL exceeds the local check in grain yield, ranged from 50 to 87xa0% across trials. To date, more than 55 varieties of IWWIP origin have been released in 10 countries of Central and West Asia including Afghanistan, Turkey, Iran, Uzbekistan and Tajikistan. Some varieties, such as Solh and Kinaci-97, have been released under different names in different countries indicating their broad adaptation. Cluster analysis of IWWYT sites indicated that IWWIP sites in Turkey and Syria are associated with most of the testing sites in Central and West Asia and North Africa (CWANA) region. The recently identified high yielding genotypes are recommended for direct release and/or parental purposes by the respective NARS.

Allelic variations and differential expressions detected at quantitative trait loci for salt stress tolerance in wheat: GWAS reveals gene loci for salt tolerance in wheat

The increasing salinization of agricultural lands is a threat to global wheat production. Understanding of the mechanistic basis of salt tolerance (ST) is essential for developing breeding and selection strategies that would allow for increased wheat production under saline conditions to meet the increasing global demand. We used a set that consists of 150 internationally derived winter and facultative wheat cultivars genotyped with a 90K SNP chip and phenotyped for ST across three growth stages and for ionic (leaf K+ and Na+ u2009contents) traits to dissect the genetic architecture regulating ST in wheat. Genome-wide association mapping revealed 187 Single Nucleotide Polymorphism (SNPs) (R2 u2009=u20093.00-30.67%), representing 37 quantitative trait loci (QTL), significantly associated with the ST traits. Of these, four QTL on 1BS, 2AL, 2BS and 3AL were associated with ST across the three growth stages and with the ionic traits. Novel QTL were also detected on 1BS and 1DL. Candidate genes linked to these polymorphisms were uncovered, and expression analyses were performed and validated on them under saline and non-saline conditions using transcriptomics and qRT-PCR data. Expressed sequence comparisons in contrasting ST wheat genotypes identified several non-synonymous/missense mutation sites that are contributory to the ST trait variations, indicating the biological relevance of these polymorphisms that can be exploited in breeding for ST in wheat.

Allelic variations and differential expressions detected at quantitative trait loci for salt stress tolerance in wheat

The increasing salinization of agricultural lands is a threat to global wheat production. Understanding of the mechanistic basis of salt tolerance (ST) is essential for developing breeding and selection strategies that would allow for increased wheat production under saline conditions to meet the increasing global demand. We used a set that consists of 150 internationally derived winter and facultative wheat cultivars genotyped with a 90K SNP chip and phenotyped for ST across three growth stages and for ionic (leaf K+ and Na+ u2009contents) traits to dissect the genetic architecture regulating ST in wheat. Genome-wide association mapping revealed 187 Single Nucleotide Polymorphism (SNPs) (R2 u2009=u20093.00-30.67%), representing 37 quantitative trait loci (QTL), significantly associated with the ST traits. Of these, four QTL on 1BS, 2AL, 2BS and 3AL were associated with ST across the three growth stages and with the ionic traits. Novel QTL were also detected on 1BS and 1DL. Candidate genes linked to these polymorphisms were uncovered, and expression analyses were performed and validated on them under saline and non-saline conditions using transcriptomics and qRT-PCR data. Expressed sequence comparisons in contrasting ST wheat genotypes identified several non-synonymous/missense mutation sites that are contributory to the ST trait variations, indicating the biological relevance of these polymorphisms that can be exploited in breeding for ST in wheat.

Allelic variations and differential expressions detected at QTL loci for salt stress tolerance in wheat

The increasing salinization of agricultural lands is a threat to global wheat production. Understanding of the mechanistic basis of salt tolerance (ST) is essential for developing breeding and selection strategies that would allow for increased wheat production under saline conditions to meet the increasing global demand. We used a set that consists of 150 internationally derived winter and facultative wheat cultivars genotyped with a 90K SNP chip and phenotyped for ST across three growth stages and for ionic (leaf K+ and Na+ u2009contents) traits to dissect the genetic architecture regulating ST in wheat. Genome-wide association mapping revealed 187 Single Nucleotide Polymorphism (SNPs) (R2 u2009=u20093.00-30.67%), representing 37 quantitative trait loci (QTL), significantly associated with the ST traits. Of these, four QTL on 1BS, 2AL, 2BS and 3AL were associated with ST across the three growth stages and with the ionic traits. Novel QTL were also detected on 1BS and 1DL. Candidate genes linked to these polymorphisms were uncovered, and expression analyses were performed and validated on them under saline and non-saline conditions using transcriptomics and qRT-PCR data. Expressed sequence comparisons in contrasting ST wheat genotypes identified several non-synonymous/missense mutation sites that are contributory to the ST trait variations, indicating the biological relevance of these polymorphisms that can be exploited in breeding for ST in wheat.