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Dive into the research topics where Ram Kumar Nema is active.

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Featured researches published by Ram Kumar Nema.


In Vitro Cellular & Developmental Biology – Animal | 2010

Entry of bovine viral diarrhea virus into ovine cells occurs through clathrin-dependent endocytosis and low pH-dependent fusion

Basavaraj Mathapati; N. Mishra; K. Rajukumar; Ram Kumar Nema; Sthita Pragnya Behera; S. C. Dubey

Although mechanisms of bovine viral diarrhea virus (BVDV) entry into bovine cells have been elucidated, little is known concerning pestivirus entry and receptor usage in ovine cells. In this study, we determined the entry mechanisms of BVDV-1 and BVDV-2 in sheep fetal thymus cells. Both BVDV-1 and BVDV-2 infections were inhibited completely by chlorpromazine, β-methyl cyclodextrin, sucrose, bafilomycin A1, chloroquine, and ammonium chloride. Simultaneous presence of reducing agent and low pH resulted in marked loss of BVDV infectivity. Moreover, BVDV was unable to fuse with ovine cell membrane by the presence of reducing agent or low pH alone, while combination of both led to fusion at low efficiency. Furthermore, sheep fetal thymus cells acutely infected with BVDV-1 or BVDV-2 were found protected from heterologous BVDV infection. Taken together, our results showed for the first time that entry of both BVDV-1 and BVDV-2 into ovine cells occurred through clathrin-dependent endocytosis, endosomal acidification, and low pH-dependent fusion following an activation step, besides suggesting the involvement of a common ovine cellular receptor during attachment and entry.


Research in Veterinary Science | 2010

Molecular characterization of RNA and protein synthesis during a one-step growth curve of bovine viral diarrhoea virus in ovine (SFT-R) cells.

N. Mishra; Basavaraj Mathapati; K. Rajukumar; Ram Kumar Nema; Sthita Pragnya Behera; S. C. Dubey

The aim of this study was to determine the kinetics of noncytopathic bovine viral diarrhoea virus (BVDV) multiplication and synthesis of BVDV specific RNA and proteins in ovine cells (SFT-R) during a one-step growth curve. The virus titre and RNA level were determined by focus-forming assay and real time RT-PCR. The RNA synthesis was detected by Northern blot while synthesis of E2 and NS3 proteins was assayed by immunohistochemistry and Western blot. The results showed that synthesis of viral RNA is initiated at 4h, NS3 and E2 proteins are detectable at 6-7h and the replication cycle is complete at 10-12h. Additionally, we provide evidence that NS2-3 protein was cleaved in ovine cells early during infection and in proliferated leukocytes of acutely infected sheep. This study showed that synthesis of BVDV RNA and proteins in ovine cells occurs at similar times as found in bovine cells.


Journal of Biosciences | 2010

Evidence of a humoral immune response against the prokaryotic expressed N-terminal autoprotease (Npro) protein of bovine viral diarrhoea virus

N. Mishra; K. Rajukumar; Shruti Shrikant Pitale; Anil Prakash; Ram Kumar Nema; Sthita Pragnya Behera; S. C. Dubey

Bovine viral diarrhoea virus (BVDV) is an economically important pathogen of cattle and sheep belonging to the genus Pestivirus of the family Flaviviridae. Although the BVDV non-structural N-terminal protease (Npro) acts as an interferon antagonist and subverts the host innate immunity, little is known about its immunogenicity. Hence, we expressed a recombinant BVDV Npro-His fusion protein (28 kDa) in E. coli and determined the humoral immune response generated by it in rabbits. The antigenicity of the Npro protein was confirmed by western blot using anti-BVDV hyperimmune cattle, sheep and goat serum, and anti-Npro rabbit serum. When rabbits were immunized with the Npro protein, a humoral immune response was evident by 4 weeks and persisted till 10 weeks post immunization as detected by ELISA and western blot. Despite Npro-specific antibodies remaining undetectable in 80 serum samples from BVDV-infected sheep and goats, BVDV hyperimmune sera along with some of the field cattle, sheep and goat sera with high BVDV neutralizing antibody titres were found positive for Npro antibodies. Our results provide evidence that despite the low immunogenicity of the BVDV Npro protein, a humoral immune response is induced in cattle, sheep and goats only with repeated BVDV exposure.


Journal of Immunoassay & Immunochemistry | 2015

Expression of Bovine Viral Diarrhea Virus Envelope Glycoprotein E2 in Yeast Pichia pastoris and its Application to an ELISA for Detection of BVDV Neutralizing Antibodies in Cattle

Sthita Pragnya Behera; N. Mishra; Ram Kumar Nema; Pooja Dubey Pandey; Semmannan Kalaiyarasu; K. Rajukumar; Anil Prakash

The aim of this article is to express envelope glycoprotein E2 of bovine viral diarrhea virus (BVDV) in yeast Pichia pastoris and its utility as a diagnostic antigen in ELISA. The BVDV E2 gene was cloned into the pPICZαA vector followed by integration into the Pichia pastoris strain X-33 genome for methanol-induced expression. SDS-PAGE and Western blot results showed that the recombinant BVDV E2 protein (72 kDa) was expressed and secreted into the medium at a concentration of 40 mg/L of culture under optimized conditions. An indirect ELISA was then developed by using the yeast-expressed E2 protein. Preliminary testing of 300 field cattle serum samples showed that the E2 ELISA showed a sensitivity of 91.07% and a specificity of 92.02% compared to the reference virus neutralization test. The concordance between the E2 ELISA and VNT was 91.67%. This study demonstrates feasibility of BVDV E2 protein expression in yeast Pichia pastoris for the first time and its efficacy as an antigen in ELISA for detecting BVDV neutralizing antibodies in cattle.


Journal of Immunoassay & Immunochemistry | 2015

Development and Evaluation of a Truncated Recombinant NS3 Antigen-based Indirect ELISA for Detection of Pestivirus Antibodies in Sheep and Goats

Semmannan Kalaiyarasu; N. Mishra; K. Rajukumar; Ram Kumar Nema; Sthita Pragnya Behera

The aim of this study was to develop an indirect ELISA using the helicase domain of bovine viral diarrhoea virus (BVDV) NS3 protein instead of full-length NS3 protein for detection of BVDV and BDV antibodies in sheep and goats and its validation by comparing its sensitivity and specificity with virus neutralization test (VNT) as the reference test. The purified 50 kDa recombinant NS3 protein was used as the coating antigen in the ELISA. The optimal concentration of antigen was 320 ng/well at a serum dilution of 1:20 and the optimal positive cut-off optical density value was 0.40 based on test results of 418 VNT negative sheep and goat sera samples. When 569 serum samples from sheep (463) and goats (106) were tested, the ELISA showed a sensitivity of 91.71% and specificity of 94.59% with BVDV VNT. A good correlation (93.67%) was observed between the two tests. It showed a sensitivity of 85% and specificity of 86.6% with VNT in detecting BDV antibody positive or negative samples. This study demonstrates the efficacy of truncated recombinant NS3 antigen based ELISA for seroepidemiological study of pestivirus infection in sheep and goats.


Comparative Immunology Microbiology and Infectious Diseases | 2011

Phylogenetic analysis of recent classical swine fever virus (CSFV) isolates from Assam, India

D. K. Sarma; N. Mishra; Stefan Vilcek; K. Rajukumar; Sthita Pragnya Behera; Ram Kumar Nema; Pooja Dubey; S. C. Dubey


Tropical Animal Health and Production | 2009

Prevalence of Bovine viral diarrhoea virus (BVDV) antibodies among sheep and goats in India.

N. Mishra; K. Rajukumar; Ashok K. Tiwari; Ram Kumar Nema; Sthita Pragnya Behera; J.S. Satav; S. C. Dubey


Comparative Immunology Microbiology and Infectious Diseases | 2011

Genetic and antigenic characterization of bovine viral diarrhoea virus type 2 isolated from cattle in India.

Sthita Pragnya Behera; N. Mishra; Stefan Vilcek; K. Rajukumar; Ram Kumar Nema; Anil Prakash; Semmannan Kalaiyarasu; S. C. Dubey


Acta Virologica | 2012

Genetic variety of bovine viral diarrhea virus 1 strains isolated from sheep and goats in India.

N. Mishra; S.S. Pitale; K. Rajukumar; Anil Prakash; Sthita Pragnya Behera; Ram Kumar Nema; S. C. Dubey


Comparative Immunology Microbiology and Infectious Diseases | 2016

Identification and molecular characterization of border disease virus (BDV) from sheep in India

N. Mishra; K. Rajukumar; Stefan Vilcek; Semmannan Kalaiyarasu; Sthita Pragnya Behera; Pooja Dubey; Ram Kumar Nema; Vishal Balbhim Gavade; S. C. Dubey; D.D. Kulkarni

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K. Rajukumar

Indian Council of Agricultural Research

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N. Mishra

Indian Council of Agricultural Research

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Sthita Pragnya Behera

Indian Veterinary Research Institute

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S. C. Dubey

Indian Veterinary Research Institute

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Semmannan Kalaiyarasu

Indian Council of Agricultural Research

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Pooja Dubey

Indian Council of Agricultural Research

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Basavaraj Mathapati

Indian Veterinary Research Institute

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Ashok K. Tiwari

Indian Veterinary Research Institute

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D. K. Sarma

Assam Agricultural University

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