Ramona Cernat

Spatial Compounding Algorithm for Speckle Reduction of Dynamic Focus OCT Images

Optical coherence tomography is capable of imaging the microstructures within tissues. To preserve the transverse resolution at all imaging depths, we implement a dynamic focusing scheme. To improve the quality of images further, a simple speckle reduction scheme is employed which uses the vibration introduced by the translation stage used for axial scanning. A spatial compounding technique is developed based on co-registration followed by an averaging algorithm. We conclude that the degree of speckle reduction achieved is worth the expense of more complicated processing required.

Design and testing of prototype handheld scanning probes for optical coherence tomography.

Three simple and low-cost configurations of handheld scanning probes for optical coherence tomography have been developed. Their design and testing for dentistry applications are presented. The first two configurations were built exclusively from available off-the-shelf optomechanical components, which, to the best of our knowledge, are the first designs of this type. The third configuration includes these components in an optimized and ergonomic probe. All the designs are presented in detail to allow for their duplication in any laboratory with a minimum effort, for applications that range from educational to high-end clinical investigations. Requirements that have to be fulfilled to achieve configurations which are reliable, ergonomic—for clinical environments, and easy to build are presented. While a range of applications is possible for the prototypes developed, in this study the handheld probes are tested ex vivo with a spectral domain optical coherence tomography system built in-house, for dental constructs. A previous testing with a swept source optical coherence tomography system has also been performed both in vivo and ex vivo for ear, nose, and throat—in a medical environment. The applications use the capability of optical coherence tomography to achieve real-time, high-resolution, non-contact, and non-destructive interferometric investigations with micrometer resolutions and millimeter penetration depth inside the sample. In this study, testing the quality of the material of one of the most used types of dental prosthesis, metalo-ceramic is thus demonstrated.

Dual instrument for in vivo and ex vivo OCT imaging in an ENT department

A dual instrument is assembled to investigate the usefulness of optical coherence tomography (OCT) imaging in an ear, nose and throat (ENT) department. Instrument 1 is dedicated to in vivo laryngeal investigation, based on an endoscope probe head assembled by compounding a miniature transversal flying spot scanning probe with a commercial fiber bundle endoscope. This dual probe head is used to implement a dual channel nasolaryngeal endoscopy-OCT system. The two probe heads are used to provide simultaneously OCT cross section images and en face fiber bundle endoscopic images. Instrument 2 is dedicated to either in vivo imaging of accessible surface skin and mucosal lesions of the scalp, face, neck and oral cavity or ex vivo imaging of the same excised tissues, based on a single OCT channel. This uses a better interface optics in a hand held probe. The two instruments share sequentially, the swept source at 1300 nm, the photo-detector unit and the imaging PC. An aiming red laser is permanently connected to the two instruments. This projects visible light collinearly with the 1300 nm beam and allows pixel correspondence between the en face endoscopy image and the cross section OCT image in Instrument 1, as well as surface guidance in Instrument 2 for the operator. The dual channel instrument was initially tested on phantom models and then on patients with suspect laryngeal lesions in a busy ENT practice. This feasibility study demonstrates the OCT potential of the dual imaging instrument as a useful tool in the testing and translation of OCT technology from the lab to the clinic. Instrument 1 is under investigation as a possible endoscopic screening tool for early laryngeal cancer. Larger size and better quality cross-section OCT images produced by Instrument 2 provide a reference base for comparison and continuing research on imaging freshly excised tissue, as well as in vivo interrogation of more superficial skin and mucosal lesions in the head and neck patient.

Investigations of the eye fundus using a simultaneous optical coherence tomography/indocyanine green fluorescence imaging system.

We develop a dual-channel optical coherence tomography/indocyanine green (OCT/ICG) fluorescence system based on our previously reported ophthalmic OCT/confocal imaging system. The confocal channel is tuned to the fluorescence wavelength range of the ICG dye and light from the same optical source is used to generate the OCT image and to excite the ICG fluorescence. The system enables the clinician to visualize simultaneously en face OCT slices and corresponding ICG angiograms of the ocular fundus, displayed side by side. C-scan (constant depth) and B-scan (cross section) images are collected by fast en face scanning (T-scan). The pixel-to-pixel correspondence between the OCT and angiography images enables the user to precisely capture OCT B-scans at selected points on the ICG confocal images.

Gabor fusion master slave optical coherence tomography

This paper describes the application of the Gabor filtering protocol to a Master/Slave (MS) swept source optical coherence tomography (SS)-OCT system at 1300 nm. The MS-OCT system delivers information from selected depths, a property that allows operation similar to that of a time domain OCT system, where dynamic focusing is possible. The Gabor filtering processing following collection of multiple data from different focus positions is different from that utilized by a conventional swept source OCT system using a Fast Fourier transform (FFT) to produce an A-scan. Instead of selecting the bright parts of A-scans for each focus position, to be placed in a final B-scan image (or in a final volume), and discarding the rest, the MS principle can be employed to advantageously deliver signal from the depths within each focus range only. The MS procedure is illustrated on creating volumes of data of constant transversal resolution from a cucumber and from an insect by repeating data acquisition for 4 different focus positions. In addition, advantage is taken from the tolerance to dispersion of the MS principle that allows automatic compensation for dispersion created by layers above the object of interest. By combining the two techniques, Gabor filtering and Master/Slave, a powerful imaging instrument is demonstrated. The master/slave technique allows simultaneous display of three categories of images in one frame: multiple depth en-face OCT images, two cross-sectional OCT images and a confocal like image obtained by averaging the en-face ones. We also demonstrate the superiority of MS-OCT over its FFT based counterpart when used with a Gabor filtering OCT instrument in terms of the speed of assembling the fused volume. For our case, we show that when more than 4 focus positions are required to produce the final volume, MS is faster than the conventional FFT based procedure.

Ex vivo optical coherence tomography imaging of larynx tissues using a forward-viewing resonant fiber-optic scanning endoscope

A miniature endoscope probe for forward viewing in a 50 kHz swept source optical coherence tomography (SS-OCT) configuration was developed. The work presented here is an intermediate step in our research towards in vivo endoscopic laryngeal cancer screening. The endoscope probe consists of a miniature tubular lead zirconate titanate (PZT) actuator, a single mode fiber (SMF) cantilever and a GRIN lens, with a diameter of 2.4 mm. The outer surface of the PZT actuator is divided into four quadrants that form two pairs of orthogonal electrodes (X and Y). When sinusoidal waves of opposite polarities are applied to one electrode pair, the PZT tube bends transversally with respect to the two corresponding quadrants, and the fiber optic cantilever is displaced perpendicular to the PZT tube. The cantilevers resonant frequency was found experimentally as 47.03 Hz. With the GRIN lens used, a lateral resolution of ~ 13 μm is expected. 2D en face spiral scanning pattern is achieved by adjusting the phase between the pairs of X and Y electrodes drive close to 90 degrees. Furthermore, we demonstrate the imaging capability of the probe by obtaining B-scan images of diseased larynx tissue and compare them with those obtained in a 1310 nm SS-OCT classical non-endoscopic system.

Avalanche photodiode-based optical coherence tomography

Optical Coherence Tomography (OCT) is used to perform in vivo high-resolution imaging of biological tissue microstructures. In the present study, we evaluate the optimum conditions to use Avalanche photodiodes (APDs) in OCT to achieve maximum signal-to-noise (S/N) ratios. The optical sources employed in OCT have a large bandwidth. Due to beating within the source line-width, excess photon noise (EPN) is generated in addition to shot noise (SN). Usually, high speed OCT requires large optical power, which makes the EPN to dominate over the SN. Therefore, balanced detection is used to reduce the EPN. We analyse the optimisation of the OCT configuration with respect to the APD noise performance. When using APDs, another parameter has to be considered in the S/N analysis: that of the voltage across the APDs, which determines, both, the gain and the noise.

Investigations of OCT imaging performance using a unique source providing several spectral wavebands

The authors report investigations into the suitability of a broadband supercontinuum fiber laser (SCFL) for use in Optical Coherence Tomography (OCT). The supercontinuum of light extending from 400 nm to 1800 nm can be used selectively in several spectral wavebands from 600 nm to 1700 nm in order to characterize the performance of single mode (SM) fiber OCT systems through spectral and auto-correlation measurements, dispersion measurements and image acquisition. Spectral selection and tailoring is made possible through a combination of bandpass optical filters. In addition, for the first time, given the optical bandwidth available, we perform evaluation of effective noise bandwidths which take into consideration the spectral behavior of the optical splitter in the balanced detection receiver.

Progress in the en-face optical coherence tomography applied to eye imaging

A review is presented of the research on high resolution imaging of the eye based on en-face OCT. This can provide a dual display of images with different depth resolutions, where the two images are OCT and the other confocal. Two applications are presented: (i) OCT/ICG systems where the confocal channel is tuned to the fluorescence of indocyanine green and (ii) aberration corrections in both OCT and confocal channels using closed loop adaptive optics for enhanced contrast and transversal resolution.

Speckle variance OCT for depth resolved assessment of the viability of bovine embryos

The morphology of embryos produced by in vitro fertilization (IVF) is commonly used to estimate their viability. However, imaging by standard microscopy is subjective and unable to assess the embryo on a cellular scale after compaction. Optical coherence tomography is an imaging technique that can produce a depth-resolved profile of a sample and can be coupled with speckle variance (SV) to detect motion on a micron scale. In this study, day 7 post-IVF bovine embryos were observed either short-term (10 minutes) or long-term (over 18 hours) and analyzed by swept source OCT and SV to resolve their depth profile and characterize micron-scale movements potentially associated with viability. The percentage of en face images showing movement at any given time was calculated as a method to detect the vital status of the embryo. This method could be used to measure the levels of damage sustained by an embryo, for example after cryopreservation, in a rapid and non-invasive way.