Rebecca L. Chancellor

Eastern Chimpanzees, but Not Bonobos, Represent a Simian Immunodeficiency Virus Reservoir

ABSTRACT Chimpanzees in west central Africa (Pan troglodytes troglodytes) are endemically infected with simian immunodeficiency viruses (SIVcpzPtt) that have crossed the species barrier to humans and gorillas on at least five occasions, generating pandemic and nonpandemic forms of human immunodeficiency virus type 1 (HIV-1) as well as gorilla SIV (SIVgor). Chimpanzees in east Africa (Pan troglodytes schweinfurthii) are also infected with SIVcpz; however, their viruses (SIVcpzPts) have never been found in humans. To examine whether this is due to a paucity of natural infections, we used noninvasive methods to screen wild-living eastern chimpanzees in the Democratic Republic of the Congo (DRC), Uganda, and Rwanda. We also screened bonobos (Pan paniscus) in the DRC, a species not previously tested for SIV in the wild. Fecal samples (n = 3,108) were collected at 50 field sites, tested for species and subspecies origin, and screened for SIVcpz antibodies and nucleic acids. Of 2,565 samples from eastern chimpanzees, 323 were antibody positive and 92 contained viral RNA. The antibody-positive samples represented 76 individuals from 19 field sites, all sampled north of the Congo River in an area spanning 250,000 km2. In this region, SIVcpzPts was common and widespread, with seven field sites exhibiting infection rates of 30% or greater. The overall prevalence of SIVcpzPts infection was 13.4% (95% confidence interval, 10.7% to 16.5%). In contrast, none of the 543 bonobo samples from six sites was antibody positive. All newly identified SIVcpzPts strains clustered in strict accordance to their subspecies origin; however, they exhibited considerable genetic diversity, especially in protein domains known to be under strong host selection pressure. Thus, the absence of SIVcpzPts zoonoses cannot be explained by an insufficient primate reservoir. Instead, greater adaptive hurdles may have prevented the successful colonization of humans by P. t. schweinfurthii viruses.

Chimpanzee accumulative stone throwing

The study of the archaeological remains of fossil hominins must rely on reconstructions to elucidate the behaviour that may have resulted in particular stone tools and their accumulation. Comparatively, stone tool use among living primates has illuminated behaviours that are also amenable to archaeological examination, permitting direct observations of the behaviour leading to artefacts and their assemblages to be incorporated. Here, we describe newly discovered stone tool-use behaviour and stone accumulation sites in wild chimpanzees reminiscent of human cairns. In addition to data from 17 mid- to long-term chimpanzee research sites, we sampled a further 34 Pan troglodytes communities. We found four populations in West Africa where chimpanzees habitually bang and throw rocks against trees, or toss them into tree cavities, resulting in conspicuous stone accumulations at these sites. This represents the first record of repeated observations of individual chimpanzees exhibiting stone tool use for a purpose other than extractive foraging at what appear to be targeted trees. The ritualized behavioural display and collection of artefacts at particular locations observed in chimpanzee accumulative stone throwing may have implications for the inferences that can be drawn from archaeological stone assemblages and the origins of ritual sites.

Protected Areas in Tropical Africa: Assessing Threats and Conservation Activities

Numerous protected areas (PAs) have been created in Africa to safeguard wildlife and other natural resources. However, significant threats from anthropogenic activities and decline of wildlife populations persist, while conservation efforts in most PAs are still minimal. We assessed the impact level of the most common threats to wildlife within PAs in tropical Africa and the relationship of conservation activities with threat impact level. We collated data on 98 PAs with tropical forest cover from 15 countries across West, Central and East Africa. For this, we assembled information about local threats as well as conservation activities from published and unpublished literature, and questionnaires sent to long-term field workers. We constructed general linear models to test the significance of specific conservation activities in relation to the threat impact level. Subsistence and commercial hunting were identified as the most common direct threats to wildlife and found to be most prevalent in West and Central Africa. Agriculture and logging represented the most common indirect threats, and were most prevalent in West Africa. We found that the long-term presence of conservation activities (such as law enforcement, research and tourism) was associated with lower threat impact levels. Our results highlight deficiencies in the management effectiveness of several PAs across tropical Africa, and conclude that PA management should invest more into conservation activities with long-term duration.

Genetic Sampling of Unhabituated Chimpanzees (Pan troglodytes schweinfurthii) in Gishwati Forest Reserve, an Isolated Forest Fragment in Western Rwanda

Many primate populations currently live in forest fragments. These populations are often unhabituated, elusive, and contain few individuals, making them difficult to study through direct observation. Noninvasive genetic methods are useful for surveying these unhabituated populations to infer the number and sex of individuals and the genetic diversity of the population. We conducted genetic analysis on 70 fecal samples from eastern chimpanzees (Pan troglodytes schweinfurthii) in Gishwati Forest Reserve, a forest fragment in western Rwanda. We genotyped all but two of these samples using 12 autosomal and 13 Y-chromosome microsatellite markers previously used in analyses of other chimpanzee populations. The genetic data show that these samples represent a minimum of 19 individuals (7 females, 12 males). However, because we may not have sampled all individuals in the population, we also performed mark-recapture analysis with the genetic data and found that the entire population likely numbers between 19 and 29 individuals. These results are consistent with opportunistic observations of at least 19 individual chimpanzees. Levels of variation at the Y-chromosome microsatellites were similar to those observed in other chimpanzee communities, suggesting that the chimpanzees in this forest are members of a single community. These results provide a baseline count of the number of male and female chimpanzees in the Gishwati Forest Reserve, and the data provide the potential for follow-up studies aimed at tracking individuals over time, thus aiding conservation management of this unhabituated population.

Determinants of Reproductive Performance Among Female Gray-Cheeked Mangabeys (Lophocebus albigena) in Kibale National Park, Uganda

Identifying the causes of differential reproductive success is key to understanding natural selection and the forces of selection operating on animals. Here we present results from a 9-yr (2004–2012) study of female reproductive performance in relation to mother’s age and rank, presence of immigrant males, rainfall, and fig fruit abundance in four groups of gray-cheeked mangabeys (Lophocebus albigena) in Kibale National Park, Uganda. We found that females had a rank- and age-specific reproductive pattern, with high-ranking females maturing earlier, having their first births earlier, and exhibiting significantly slower reproductive aging than low-ranking females. We also found that both immigrant and resident males were associated with higher birth rates. Finally, we found that reproduction was aseasonal and did not correlate with rainfall, but that births correlated positively with the abundance of fruits of Ficus spp. Our results show broad similarities between arboreal, forest-dwelling gray-cheeked mangabeys and their more terrestrial, open habitat-dwelling papionin relatives in the importance of dominance rank in estrous cycle initiation, first reproduction, and reproductive aging.

Chimpanzee seed dispersal in a montane forest fragment in Rwanda

Primate seed dispersal plays an important role in forest regeneration. It may be particularly important to anthropogenically disturbed habitats such as forest fragments. However, few studies have examined primate seed dispersal in these types of environments. Chimpanzees (Pan troglodytes) are frugivorous and large‐bodied, and are therefore able to disperse both large and small seeds, making them an important seed dispersal species. We examined chimpanzee seed dispersal in Gishwati forest, a 14 km2 montane rainforest fragment in Rwanda. We systematically collected ≤24‐hr‐old fecal samples and counted the number of seeds of each fruit species. We also recorded observations of seeds found in wadges. We found that chimpanzees dispersed at least 18 fruit species in 14 families in their feces. Ninety‐five percent of feces had seeds, the most common of which were Ficus spp., Myrianthus holstii, and Maesa lanceolata. We estimated that the Gishwati chimpanzee community with a density of 1.7 individuals per km2 dispersed an average of 592 (>2 mm) seeds km−2 day−1. We also found that chimpanzees dispersed the seeds of at least two fruit species, Ficus spp. and Chrysophyllum gorungosanum, in their wadges. In addition, 17% of the tree species recorded in our vegetation plots were chimpanzee‐dispersed. This study emphasizes the importance of chimpanzees as large seed dispersers in regenerating forest fragments.