Regine Herbst-Irmer

Comparison of silver and molybdenum microfocus X-ray sources for single-crystal structure determination

A detailed comparison of single-crystal diffraction data collected with Ag Kα and Mo Kα microsources (IµS) indicates that the Ag Kα data are better when absorption is significant. Empirical corrections intended to correct for absorption also correct well for the effects of the highly focused IµS beams.

A Stable Singlet Biradicaloid Siladicarbene: (L:)2Si

Silicon, the congener of carbon, frequently shows different chemistry than that of its sister element. It has been realized that silicon prefers a positive charge if bonded to a more electronegative atom. Compounds with silicon in lower oxidation states are very important, since they can activate small organic molecules which cannot be activated by transition metals. In 2008 Robinson et al. reported on the adduct of two N-heterocyclic carbene (NHC) molecules with disilicon A (Scheme 1). This unusual compound was prepared

A Ligand-Induced Switch in the Periplasmic Domain of Sensor Histidine Kinase Cita.

Sensor histidine kinases of two-component signal-transduction systems are essential for bacteria to adapt to variable environmental conditions. However, despite their prevalence, it is not well understood how extracellular signals such as ligand binding regulate the activity of these sensor kinases. CitA is the sensor histidine kinase in Klebsiella pneumoniae that regulates the transport and anaerobic metabolism of citrate in response to its extracellular concentration. We report here the X-ray structures of the periplasmic sensor domain of CitA in the citrate-free and citrate-bound states. A comparison of the two structures shows that ligand binding causes a considerable contraction of the sensor domain. This contraction may represent the molecular switch that activates transmembrane signaling in the receptor.

Acyclic Germylones: Congeners of Allenes with a Central Germanium Atom

The cyclic alkyl(amino) carbene (cAAC:)-stabilized acyclic germylones (Me2-cAAC:)2Ge (1) and (Cy2-cAAC:)2Ge (2) were prepared utilizing a one-pot synthesis of GeCl2(dioxane), cAAC:, and KC8 in a 1:2:2.1 molar ratio. Dark green crystals of compounds 1 and 2 were produced in 75 and 70% yields, respectively. The reported methods for the preparation of the corresponding silicon compounds turned out to be not applicable in the case of germanium. The single-crystal X-ray structures of 1 and 2 feature the C-Ge-C bent backbone, which possesses a three-center two-electron π-bond system. Compounds 1 and 2 are the first acyclic germylones containing each one germanium atom and two cAAC: molecules. EPR measurements on compounds 1 and 2 confirmed the singlet spin ground state. DFT calculations on 1/2 revealed that the singlet ground state is more stable by ~16 to 18 kcal mol(-1) than that of the triplet state. First and second proton affinity values were theoretically calculated to be of 265.8 (1)/267.1 (2) and 180.4 (1)/183.8 (2) kcal mol(-1), respectively. Further calculations, which were performed at different levels suggest a singlet diradicaloid character of 1 and 2. The TD-DFT calculations exhibit an absorption band at ~655 nm in n-hexane solution that originates from the diradicaloid character of germylones 1 and 2.

Synthesis of chiroptical molecular switches by pd-catalyzed domino reactions.

New photochromic switches based on helical alkenes can quickly and efficiently be accessed by Pd-catalyzed domino reactions using a modular approach; this allows a wide variability in product formation with the advantages of a convergent synthetic route. The alkenes have been synthesized in excellent enantioselectivity and their switching properties assessed by stimulation with nanosecond laser pulses at two different wavelengths in over 1000 switching cycles.

Striking Stability of a Substituted Silicon(II) Bis(trimethylsilyl)amide and the Facile Si–Me Bond Cleavage without a Transition Metal Catalyst

Silicon(II) bis(trimethylsilyl)amide (LSiN(SiMe(3))(2), L= PhC(NtBu)(2)) (2) has been synthesized by the reaction of LSiHCl(2) with KN(SiMe(3))(2) in 1:2 molar ratio in high yield where 1 equiv of the latter functions as a dehydrochlorinating agent. 2 exhibits a high stability up to 154 °C and can be handled in open air for a short period of time without any appreciable decomposition. An amazing five-membered cyclic silene (3) results from the cleavage of one Si-Me bond of 2 with an adamantyl phosphaalkyne. 3 is the first example of a heavy cyclopentene derivative which consists of four different elements, C, N, Si, and P. Both compounds are characterized by multinuclear NMR spectroscopy, EI-mass spectrometry, and single crystal X-ray diffraction studies.

Structure and crystal packing of 4-aminobenzonitriles and 4-amino-3,5-dimethylbenzonitriles at various temperatures

The amino N atom in 4-aminobenzonitrile (ABN) and 4-(dimethylamino)benzonitrile (DMABN) has a pyramidal character, with values of 34 (3) and 11.9 (3) o , respectively, for the angle between the planes of the amino group and the phenyl ring. In 3,5-dimethyl-4-(dimethylamino)benzonitrile (MMD) at 173 K, the dimethylamino group is twisted over an angle of 59.3 (2) o with respect to the phenyl plane. In addition, the amino N(1) atom is not located in the plane of the phenyl ring, with an out-of-plane displacement of 0.117 (5) A

Easy Access to Silicon(0) and Silicon(II) Compounds

Two different synthetic methodologies of silicon dihalide bridged biradicals of the general formula (L(n)•)2SiX2 (n = 1, 2) have been developed. First, the metathesis reaction between NHC:SiX2 and L(n): (L(n): = cyclic akyl(amino) carbene in a 1:3 molar ratio leads to the products 2 (n = 1, X = Cl), 4 (n = 2, X = Cl), 6 (n = 1, X = Br), and 7 (n = 2, X = Br). These reactions also produce coupled NHCs (3, 5) under C-C bond formation. The formation of the coupled NHCs (L(m) = cyclic alkyl(amino) carbene substituted N-heterocyclic carbene; m = 3, n = 1 (3) and m = 4, n =2 (5)) is faster during the metathesis reaction between NHC:SiBr2 and L(n): when compared with that of NHC:SiCl2. Second, the reaction of L(1):SiCl4 (8) (L(1): =:C(CH2)(CMe2)2N-2,6-iPr2C6H3) with a non-nucleophilic base LiN(iPr)2 in a 1:1 molar ratio shows an unprecedented methodology for the synthesis of the biradical (L(1)•)2SiCl2 (2). The blue blocks of silicon dichloride bridged biradicals (2, 4) are stable for more than six months under an inert atmosphere and in air for one week. Compounds 2 and 4 melt in the temperature range of 185 to 195 °C. The dibromide (6, 7) analogue is more prone to decomposition in the solution but comparatively more stable in the solid state than in the solution. Decomposition of the products has been observed in the UV-vis spectra. Moreover, compounds 2 and 4 were further converted to stable singlet biradicaloid dicarbene-coordinated (L(n):)2Si(0) (n = 1 (9), 2 (10)) under KC8 reduction. Compounds 2 and 4 were also reduced to dehalogenated products 9 and 10, respectively when treated with RLi (R = Ph, Me, tBu). Cyclic voltametry measurements show that 10 can irreversibly undergo both one electron oxidation and reduction.

Experimental Charge Density Study of a Silylone

An experimental and theoretical charge density study confirms the interpretation of (cAAC)2Si as a silylone to be valid. Two separated VSCCs present in the non-bonding region of the central silicon are indicative for two lone pairs. In the experiment, both the two crystallographically independent Si-C bond lengths and ellipticities vary notably. It is only the cyclohexyl derivative that shows significant differences in these values, both in the silylones and the germylones. Only by calculating increasing spheres of surrounding point charges we were able to recover the changes in the properties of the charge density distribution caused by weak intermolecular interactions. The nitrogen-carbene-carbon bond seems to have a significant double-bond character, indicating a singlet state for the carbene carbon, which is needed for donor acceptor bonding. Thus the sum of bond angles at the nitrogen atoms seems to be a reasonable estimate for singlet versus triplet state of cAACs.

Oxo-molybdenum and oxo-tungsten complexes of Schiff bases relevant to molybdoenzymes

A series of octahedral dioxomolybdenum(VI) complexes of the type [MoO(2)L(2)] {L = 4-Ar-pent-2-en-ol; L(i-Pr2Ph) with Ar = 2,6-diisopropylphenyl (1); L(Me2Ph) with Ar = 2,6-dimethylphenyl (2), L(MePh) with Ar = 2-methylphenyl (3) and with Ar = phenyl (4)} and dioxotungsten(VI) compounds [WO(2)L(2)] {L(i-Pr2Ph) (5); L(Me2Ph) (6) and L(MePh) (7)} with Schiff bases have been synthesized as models for oxotransferases. Spectroscopic characterization in solution shows with the sterically encumbered ligands L(i-Pr2)Ph and L(Me2)Ph isomerically pure products whereas the ligand with only one substituent in ortho position at the aromatic ring L(MePh) revealed a dynamic mixture of three isomers as confirmed by variable temperature NMR spectroscopy. Single crystal X-ray diffraction analyses of compounds 1, 2, and 4 and showed them to be in the N,N-trans conformation consistent with the larger steric demand at nitrogen. Oxygen atom transfer (OAT) properties towards trimethylphosphine were investigated leading to the isolation of two mononuclear molybdenum(IV) compounds [MoO(PMe(3))(L(Me2Ph))(2)] (8) and [MoO(PMe(3))(L(MePh))(2)] (9) as confirmed by spectroscopic and crystallographic means. The kinetics of OAT between complex [MoO(2)(L(Me2Ph))(2)] (2) and PMe(3) was investigated by UV/Vis spectroscopy under pseudo-first-order conditions revealing single-step reactions with Eyring values of DeltaH(double dagger) = +60.79 kJ mol(-1) and DeltaS(double dagger) = -112 J mol(-1) K(-1) and a first-order dependence of phosphine consistent with a slow nucleophilic attack of the phosphine showing the octahedral geometries of this system to be unfavorable for OAT. Compound 1 showed no OAT reactivity towards PMe(3) emphasizing the influence of sterical properties. Furthermore, the reactivity of the reduced compounds [MoO(PMe(3))(L(Me2Ph))(2)] (8) and [MoO(PMe(3))(L(MePh))(2)] (9) towards molecular oxygen was investigated leading, in the case of 8, to the substitution of PMe(3) by O(2) under formation of the peroxo compound [MoO(O(2))(L(Me2Ph))(2)] (10). In contrast, the analogous reaction employing 9 led to oxidation forming the dioxo compound [MoO(2)(L(MePh))(2)] (3).