Ricardo M. Sousa

Patellid Limpets: An Overview of the Biology and Conservation of Keystone Species of the Rocky Shores

This work reviews a broad spectrum of subjects associated to Patellid limpets’ biology such as growth, reproduction, and recruitment, also the consequences of commercial exploitation on the stocks and the effects of marine protected areas (MPAs) in the biology and populational dynamics of these intertidal grazers. Knowledge of limpets’ biological traits plays an important role in providing proper background for their effective management. This chapter focuses on determining the effect of biotic and abiotic factors that influence these biological characteristics and associated geographical patterns. Human exploitation of limpets is one of the main causes of disturbance in the intertidal ecosystem and has occurred since prehistorical times resulting in direct and indirect alterations in the abundance and size structure of the target populations. The implementation of MPAs has been shown to result in greater biomass, abundance, and size of limpets and to counter other negative anthropogenic effects. However, inefficient planning and lack of surveillance hinder the accomplishment of the conservation purpose of MPAs. Inclusive conservation approaches involving all the stakeholders could guarantee future success of conservation strategies and sustainable exploitation. This review also aims to establish how beneficial MPAs are in enhancing recruitment and yield of adjacent exploited populations.

NanEye-An Endoscopy Sensor With 3-D Image Synchronization

In this paper, an innovative camera synchronization technique is presented, enabling the combination of two 1 mm

Advanced illumination control algorithm for medical endoscopy applications

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Full image-processing pipeline in field-programmable gate array for a small endoscopic camera

mm sized cameras to produce a real-time 3-D image. The technique developed and implemented on an FPGA platform with an USB3 interface, allows minimal error synchronization of up to an eight individual self-timed cameras. Typically, a small self-timed camera modules do not allow external synchronization, but for stereo vision, 3-D reconstruction with multiple cameras, and applications requiring pulsed illumination, camera synchronization is required. The developed solution uses the power supply control to dynamically adapt their frame rate and frame phase. The control core overviews the operating frequency of each camera by measuring the line period in each frame based on a well-defined sampling signal. The frequency is then adjusted by varying the voltage level applied to the sensor using as a reference the error between the measured and desired line period. This allows for average synchronization errors below 0.02% at temperatures ranging from 0 °C to 60 °C. This paper will allow the implementation of smaller than 3-mm-diameter 3-D stereo vision equipment for medical endoscopy, such as disposable robotic or micro invasive surgery applications.

On the implementation of the gamma function for image correction on a endoscopic camera

CMOS image sensor manufacturer, AWAIBA, is providing the world’s smallest digital camera modules to the world market for minimally invasive surgery and one time use endoscopic equipment. Based on the world’s smallest digital camera head and the evaluation board provided to it, the aim of this paper is to demonstrate an advanced fast response dynamic control algorithm of the illumination LED source coupled to the camera head, over the LED drivers embedded on the evaluation board. Cost efficient and small size endoscopic camera modules nowadays embed minimal size image sensors capable of not only adjusting gain and exposure time but also LED illumination with adjustable illumination power. The LED illumination power has to be dynamically adjusted while navigating the endoscope over changing illumination conditions of several orders of magnitude within fractions of the second to guarantee a smooth viewing experience. The algorithm is centered on the pixel analysis of selected ROIs enabling it to dynamically adjust the illumination intensity based on the measured pixel saturation level. The control core was developed in VHDL and tested in a laboratory environment over changing light conditions. The obtained results show that it is capable of achieving correction speeds under 1 s while maintaining a static error below 3% relative to the total number of pixels on the image. The result of this work will allow the integration of millimeter sized high brightness LED sources on minimal form factor cameras enabling its use in endoscopic surgical robotic or micro invasive surgery.

Image synchronization for 3D application using the NanEye sensor

Endoscopy is an imaging procedure used for diagnosis as well as for some surgical purposes. The camera used for the endoscopy should be small and able to produce a good quality image or video, to reduce discomfort of the patients, and to increase the efficiency of the medical team. To achieve these fundamental goals, a small endoscopy camera with a footprint of 1  mm×1  mm×1.65  mm is used. Due to the physical properties of the sensors and human vision system limitations, different image-processing algorithms, such as noise reduction, demosaicking, and gamma correction, among others, are needed to faithfully reproduce the image or video. A full image-processing pipeline is implemented using a field-programmable gate array (FPGA) to accomplish a high frame rate of 60 fps with minimum processing delay. Along with this, a viewer has also been developed to display and control the image-processing pipeline. The control and data transfer are done by a USB 3.0 end point in the computer. The full developed system achieves real-time processing of the image and fits in a Xilinx Spartan-6LX150 FPGA.

Considerations on the Biology of Plesionika narval (Fabricius, 1787) in the Northeastern Atlantic

This paper describes part of project that implemented the image processing of a CMOS sensor for endoscopic purposes. The sensor is a small sized device of 1×1mm2 and the image processing has been done inside a FPGA. This part of the work describes the implementation of the Gamma function with a balance between the resources needed and the accuracy. A linear piecewise solution was used that stores the values for 31 gamma functions with values ranging from 1 to 4 with 0.1 steps. The solution developed is 10 bit based, was coded in VHDL and is implemented in a Spartan 6 FPGA. The results show that it is an accurate solution that has a small footprint in terms of used resources.

First approach to the biology of the deep-water shark Deania profundorum (Chondrichthyes: Centrophoridae)

Based on Awaiba’s NanEye CMOS image sensor family and a FPGA platform with USB3 interface, the aim of this paper is to demonstrate a novel technique to perfectly synchronize up to 8 individual self-timed cameras. Minimal form factor self-timed camera modules of 1 mm x 1 mm or smaller do not generally allow external synchronization. However, for stereo vision or 3D reconstruction with multiple cameras as well as for applications requiring pulsed illumination it is required to synchronize multiple cameras. In this work, the challenge to synchronize multiple self-timed cameras with only 4 wire interface has been solved by adaptively regulating the power supply for each of the cameras to synchronize their frame rate and frame phase. To that effect, a control core was created to constantly monitor the operating frequency of each camera by measuring the line period in each frame based on a well-defined sampling signal. The frequency is adjusted by varying the voltage level applied to the sensor based on the error between the measured line period and the desired line period. To ensure phase synchronization between frames of multiple cameras, a Master-Slave interface was implemented. A single camera is defined as the Master entity, with its operating frequency being controlled directly through a PC based interface. The remaining cameras are setup in Slave mode and are interfaced directly with the Master camera control module. This enables the remaining cameras to monitor its line and frame period and adjust their own to achieve phase and frequency synchronization. The result of this work will allow the realization of smaller than 3mm diameter 3D stereo vision equipment in medical endoscopic context, such as endoscopic surgical robotic or micro invasive surgery.