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Dive into the research topics where Richard J. B. H. N. van den Berg is active.

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Featured researches published by Richard J. B. H. N. van den Berg.


Journal of Medicinal Chemistry | 2010

Dual-Action Lipophilic Iminosugar Improves Glycemic Control in Obese Rodents by Reduction of Visceral Glycosphingolipids and Buffering of Carbohydrate Assimilation

Tom Wennekes; Alfred J. Meijer; Albert K. Groen; Rolf G. Boot; Johanna E. M. Groener; Marco van Eijk; Roelof Ottenhoff; Nora Bijl; Karen Ghauharali; Hang Song; Tom J. O'shea; Hanlan Liu; Nelson S. Yew; Diane P. Copeland; Richard J. B. H. N. van den Berg; Gijsbert A. van der Marel; Herman S. Overkleeft; Johannes M. F. G. Aerts

The lipophilic iminosugar N-[5-(adamantan-1-ylmethoxy)pentyl]-1-deoxynojirimycin (2, AMP-DNM) potently controls hyperglycemia in obese rodent models of insulin resistance. The reduction of visceral glycosphingolipids by 2 is thought to underlie its beneficial action. It cannot, however, be excluded that concomitant inhibition of intestinal glycosidases and associated buffering of carbohydrate assimilation add to this. To firmly establish the mode of action of 2, we developed a panel of lipophilic iminosugars varying in configuration at C-4/C-5 and N-substitution of the iminosugar. From these we identified the l-ido derivative of 2, l-ido-AMP-DNM (4), as a selective inhibitor of glycosphingolipid synthesis. Compound 4 lowered visceral glycosphingolipids in ob/ob mice and ZDF rats on a par with 2. In contrast to 2, 4 did not inhibit sucrase activity or sucrose assimilation. Treatment with 4 was significantly less effective in reducing blood glucose and HbA1c. We conclude that the combination of reduction of glycosphingolipids in tissue and buffering of carbohydrate assimilation by 2 produces a superior glucose homeostasis.


Organic Letters | 2010

Synthesis of l-altro-1-Deoxynojirimycin, d-allo-1-Deoxynojirimycin, and d-galacto-1-Deoxynojirimycin from a Single Chiral Cyanohydrin

Adrianus M. C. H. van den Nieuwendijk; Mark Ruben; Sander E. Engelsma; Martijn D.P. Risseeuw; Richard J. B. H. N. van den Berg; Rolf G. Boot; Johannes M. F. G. Aerts; Johannes Brussee; Gijs A. van der Marel; Herman S. Overkleeft

The chemoenzymatic synthesis of three 1-deoxynojirimycin-type iminosugars is reported. Key steps in the synthetic scheme include a Dibal reduction-transimination-sodium borohydride reduction cascade of reactions on an enantiomerically pure cyanohydrin, itself prepared employing almond hydroxynitrile lyase (paHNL) as the common precursor. Ensuing ring-closing metathesis and Upjohn dihydroxylation afford the target compounds.


Tetrahedron Letters | 2002

A simple and low cost synthesis of d-erythro-sphingosine and d-erythro-azidosphingosine from d-ribo-phytosphingosine: glycosphingolipid precursors

Richard J. B. H. N. van den Berg; Cornelis G.N. Korevaar; Gijsbert A. van der Marel; Herman S. Overkleeft; Jacques H. van Boom

d-erythro-Sphingosine (1) and d-erythro-2-azidosphingosine (2) are both prepared from commercially available and cheap d-ribo-phytosphingosine (3) in a yield of 58% and 70%, respectively. A key transformation in the synthesis of d-erythro-sphingosine (1) is the palladium catalyzed regiospecific reduction of the Z-enol triflate 9. A crucial step in the synthesis of azidosphingosine 2 comprises a regio- and stereoselective in situ trans-elimination of the 4-O-triflate of azidophytosphingosine 13.


Bioorganic & Medicinal Chemistry | 2010

Nanomolar affinity, iminosugar-based chemical probes for specific labeling of lysosomal glucocerebrosidase.

Monique van Scherpenzeel; Richard J. B. H. N. van den Berg; Wilma E. Donker-Koopman; Rob M. J. Liskamp; Johannes M. F. G. Aerts; Herman S. Overkleeft; Roland J. Pieters

Three different photoprobes were synthesized to label beta-glucosidases; one probe was based on glucose, two probes on the iminosugar deoxynojirimycin. The affinity of the probes for three different beta-glucosidases was determined. Furthermore, their labeling efficiencies, binding specificities through competition with deoxynojirimycin, and binding specificities in the presence of cell lysate, were evaluated. Especially one showed very high affinity towards non-lysosomal glucoceramidase (IC(50)=20 nM).


ACS Medicinal Chemistry Letters | 2011

Identification of Potent and Selective Glucosylceramide Synthase Inhibitors from a Library of N-Alkylated Iminosugars

Amar Ghisaidoobe; Pieter Bikker; Arjan C. J. de Bruijn; Frithjof D. Godschalk; Eva Rogaar; Marieke C. Guijt; Peter Hagens; Jerre M. Halma; Steven M. van't Hart; Stijn B. Luitjens; Vincent H. S. van Rixel; Mark Wijzenbroek; Thor Zweegers; Wilma E. Donker-Koopman; Anneke Strijland; Rolf G. Boot; Gijs A. van der Marel; Herman S. Overkleeft; Johannes M. F. G. Aerts; Richard J. B. H. N. van den Berg

Glucosylceramide synthase (GCS) is an important target for clinical drug development for the treatment of lysosomal storage disorders and a promising target for combating type 2 diabetes. Iminosugars are useful leads for the development of GCS inhibitors; however, the effective iminosugar type GCS inhibitors reported have some unwanted cross-reactivity toward other glyco-processing enzymes. In particular, iminosugar type GCS inhibitors often also inhibit to some extent human acid glucosylceramidase (GBA1) and the nonlysosomal glucosylceramidase (GBA2), the two enzymes known to process glucosylceramide. Of these, GBA1 itself is a potential drug target for the treatment of the lysosomal storage disorder, Gaucher disease, and selective GBA1 inhibitors are sought after as potential chemical chaperones. The physiological importance of GBA2 in glucosylceramide processing in relation to disease states is less clear, and here, selective inhibitors can be of use as chemical knockout entities. In this communication, we report our identification of a highly potent and selective N-alkylated l-ido-configured iminosugar. In particular, the selectivity of 27 for GCS over GBA1 is striking.


Journal of Medicinal Chemistry | 2014

Identification and development of biphenyl substituted iminosugars as improved dual glucosylceramide synthase/neutral glucosylceramidase inhibitors.

Amar Ghisaidoobe; Richard J. B. H. N. van den Berg; Saleem S. Butt; Anneke Strijland; Wilma E. Donker-Koopman; Saskia Scheij; Adrianus M. C. H. van den Nieuwendijk; Gerrit-Jan Koomen; Arnold van Loevezijn; Mark Leemhuis; Tom Wennekes; Mario van der Stelt; Gijsbert A. van der Marel; Constant A. A. van Boeckel; Johannes M. F. G. Aerts; Herman S. Overkleeft

This work details the evaluation of a number of N-alkylated deoxynojirimycin derivatives on their merits as dual glucosylceramide synthase/neutral glucosylceramidase inhibitors. Building on our previous work, we synthesized a series of D-gluco and L-ido-configured iminosugars N-modified with a variety of hydrophobic functional groups. We found that iminosugars featuring N-pentyloxymethylaryl substituents are considerably more potent inhibitors of glucosylceramide synthase than their aliphatic counterparts. In a next optimization round, we explored a series of biphenyl-substituted iminosugars of both configurations (D-gluco and L-ido) with the aim to introduce structural features known to confer metabolic stability to drug-like molecules. From these series, two sets of molecules emerge as lead series for further profiling. Biphenyl-substituted L-ido-configured deoxynojirimycin derivatives are selective for glucosylceramidase and the nonlysosomal glucosylceramidase, and we consider these as leads for the treatment of neuropathological lysosomal storage disorders. Their D-gluco-counterparts are also potent inhibitors of intestinal glycosidases, and because of this characteristic, we regard these as the prime candidates for type 2 diabetes therapeutics.


ACS Medicinal Chemistry Letters | 2011

Assessment of partially deoxygenated deoxynojirimycin derivatives as glucosylceramide synthase inhibitors.

Richard J. B. H. N. van den Berg; Tom Wennekes; Amar Ghisaidoobe; Wilma E. Donker-Koopman; Anneke Strijland; Rolf G. Boot; Gijsbert A. van der Marel; Johannes M. F. G. Aerts; Herman S. Overkleeft

Glucosylceramide synthase (GCS) is an approved drug target for the treatment of Gaucher disease and is considered as a valid target for combating other human pathologies, including type 2 diabetes. The clinical drug N-butyldeoxynojirimycin (Zavesca) is thought to inhibit through mimicry of its substrate, ceramide. In this work we demonstrate that, in contrast to what is proposed in this model, the C2-hydroxyl of the deoxynojirimycin core is important for GCS inhibition. Here we show that C6-OH appears of less important, which may set guidelines for the development of GCS inhibitors that have less affinity (in comparison with Zavesca) for other glycoprocessing enzymes, in particular those hydrolases that act on glucosylceramide.


Bioorganic & Medicinal Chemistry | 2008

Synthesis and evaluation of homodimeric GnRHR antagonists having a rigid bis-propargylated benzene core

Kimberly M. Bonger; Richard J. B. H. N. van den Berg; Annemiek D. Knijnenburg; Laura H. Heitman; Ad P. IJzerman; Julia Oosterom; Cornelis Marius Timmers; Herman S. Overkleeft; Gijsbert A. van der Marel

The fact that GPCRs might function in a dimeric fashion is currently well accepted. For GnRHR, a GPCR that regulates gonadotropin release, there is evidence that the receptor also functions as a dimer. We here describe the design and synthesis of a set of dimeric GnRHR antagonists in order to understand the interaction of dimeric ligands to the receptor and to address the question whether GnRHR dimerization is a prerequisite for signalling. Biological evaluation of the compounds shows no discrimination between monomeric and dimeric-ligands in respect to binding affinities, however, the dimeric ligands appear to have different functional properties.


Journal of Medicinal Chemistry | 2017

Triazole Ureas Act as Diacylglycerol Lipase Inhibitors and Prevent Fasting-Induced Refeeding

Hui Deng; Sander Kooijman; Adrianus M. C. H. van den Nieuwendijk; Daisuke Ogasawara; Tom van der Wel; Floris van Dalen; Marc P. Baggelaar; Freek J. Janssen; Richard J. B. H. N. van den Berg; Hans den Dulk; Benjamin F. Cravatt; Herman S. Overkleeft; Patrick C. N. Rensen; Mario van der Stelt

Triazole ureas constitute a versatile class of irreversible inhibitors that target serine hydrolases in both cells and animal models. We have previously reported that triazole ureas can act as selective and CNS-active inhibitors for diacylglycerol lipases (DAGLs), enzymes responsible for the biosynthesis of 2-arachidonoylglycerol (2-AG) that activates cannabinoid CB1 receptor. Here, we report the enantio- and diastereoselective synthesis and structure-activity relationship studies. We found that 2,4-substituted triazole ureas with a biphenylmethanol group provided the most optimal scaffold. Introduction of a chiral ether substituent on the 5-position of the piperidine ring provided ultrapotent inhibitor 38 (DH376) with picomolar activity. Compound 38 temporarily reduces fasting-induced refeeding of mice, thereby emulating the effect of cannabinoid CB1-receptor inverse agonists. This was mirrored by 39 (DO34) but also by the negative control compound 40 (DO53) (which does not inhibit DAGL), which indicates the triazole ureas may affect the energy balance in mice through multiple molecular targets.


Journal of Organic Chemistry | 2015

Synthesis of 6-Hydroxysphingosine and α-Hydroxy Ceramide Using a Cross-Metathesis Strategy

Patrick Wisse; Mark A. R. de Geus; Gen Cross; Adrianus M. C. H. van den Nieuwendijk; Eva J. van Rooden; Richard J. B. H. N. van den Berg; Johannes M. F. G. Aerts; Gijsbert A. van der Marel; Jeroen D. C. Codée; Herman S. Overkleeft

In this paper, a new synthetic route toward 6-hydroxysphingosine and α-hydroxy ceramide is described. The synthesis employs a cross-metathesis to unite a sphingosine head allylic alcohol with a long-chain fatty acid alkene that also bears an allylic alcohol group. To allow for a productive CM coupling, the sphingosine head allylic alcohol was protected with a cyclic carbonate moiety and a reactive CM catalyst system, consisting of Grubbs II catalyst and CuI, was employed.

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Tom Wennekes

Wageningen University and Research Centre

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Rolf G. Boot

University of Amsterdam

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