Richard W. Yarnell

An evaluation of distance sampling to estimate badger (Meles meles) abundance

Distance sampling is a common and increasingly used method of estimating animal abundance in conservation and management programmes. The precision of a distance sampling survey can be estimated from the field data, but accuracy can only be evaluated by comparison with the true population size. For wild mammal populations, such opportunities are rare. The high-density badger Meles meles population at Woodchester Park in Gloucestershire, U.K. has been routinely and intensively live-trapped for the past 30 years. The estimates of abundance based on mark–recapture analyses of the live-trapping data provided a reliable baseline against which to evaluate distance sampling for a badger population. A distance sampling survey was carried out in autumn 2002 by using spotlighting along line transects. Owing to the impractical nature of spotlighting in closed habitats, such as woodland, surveys were conducted in open habitat only. A radio-tracking study provided behavioural data that were used to estimate the proportion of the population available for sampling in open habitats. This was incorporated as a multiplier into the DISTANCE analysis. The estimate of abundance from distance sampling was 76 badgers (% CV=42.2), using a multiplier based on radio-tracking data from autumn only. When the multiplier was derived from radio-tracking data from across the whole year, based on a larger sample of tracked badgers, the distance sampling abundance estimate was 77 badgers (% CV=25.9). These compared favourably to the mark–recapture estimate of 68 badgers (% C.V=7.4). The lack of precision in the distance sampling density estimate was largely owing to the inclusion of the multiplier. Distance sampling combined with data on habitat use can produce reliable estimates of badger abundance in areas of medium to high density, particularly in landscapes of primarily open habitat.

FORUM: Ecologists need robust survey designs, sampling and analytical methods

Summary 1. Research that yields conflicting results rightly causes controversy. Where methodological weaknesses are apparent, there is ready opportunity for discord within the scientific community, which may undermine the entire study. 2. We use the debate about the role of dingoes Canis dingo in conservation in Australia as a case study for a phenomenon that is relevant to all applied ecologists, where conflicting results have been published in high-quality journals and yet the problems with the methods used in these studies have led to significant controversy. 3. To alleviate such controversies, scientists need to use robust methods to ensure that their results are repeatable and defendable. To date, this has not occurred in Australia’s dingo debate due to the use of unvalidated indices that rely on unsupported assumptions. 4. We highlight the problems that poor methods have caused in this debate. We also reiterate our recommendations for practitioners, statisticians and researchers to work together to develop long-term, multi-site experimental research programmes using robust methods to understand the impacts of dingoes on mesopredators. 5. Synthesis and applications. Incorporating robust methods and appropriate experimental designs is needed to ensure that conservation actions are appropriately focused and are supported with robust results. Such actions will go a long way towards resolving the debate about the role of dingoes in conservation in Australia, and other, ecological debates.

Identifying individual wild Eastern grey wolves (Canis lupus lycaon) using fundamental frequency and amplitude of howls

The use of amplitudes to identify individuals has historically been ignored by bioacoustic researchers due to problems of attenuation. However, recent studies have shown that amplitudes encode identity in a variety of mammal species. Previously, individuality has been demonstrated in both fundamental frequency (F0) and amplitude changes of captive Eastern wolf (Canis lupus lycaon) howls with 100% accuracy where attenuation of amplitude due to distance was controlled in a captive environment. In this study, we aim to determine whether both fundamental frequency and amplitude data collected from vocalizations of wild wolves recorded over unknown distances, in variable conditions and with different recording equipment, can still encode identity. We used a bespoke code, developed in Matlab, to extract simple scalar variables from 67 high-quality solo howls from 10 wild individuals and 112 chorus howls from another 109 individuals, including lower quality howls with wind or water noise. Principal component analysis (PCA) was carried out on the fundamental frequency and normalized amplitude of harmonic 1, yielding histogram-derived PCA values on which discriminant function analysis was applied. An accuracy of 100% was achieved when assigning solo howls to individuals, and for the chorus howls a best accuracy of 97.4% was achieved. We suggest that individual recognition using our new extraction and analysis methods involving fundamental frequency and amplitudes together can identify wild wolves with high accuracy, and that this method should be applied to surveys of individuals in capture–mark–recapture and presence–absence studies of canid species.

An assessment of diet overlap of two mesocarnivores in the North West Province, South Africa

We used scat analysis to study the diet of two sympatric medium-sized carnivores: brown hyaena and black-backed jackal, in the North West Province of South Africa. Seven major dietary categories were identified from the scats, with mammal remains being most common for both species. Brown hyaena scats contained more large mammal remains, which together with the presence of invertebrates (in 50% of all brown hyaena scats), suggests that they mainly scavenged. Jackal scats contained a higher proportion of small mammal remains, suggesting that jackals actively hunted more often than brown hyaenas did. The diets differed significantly between the two species, even though diet overlap was fairly high (0.79). Further analysis, albeit based on small sample sizes, suggests that diet of these mesopredators differ between protected reserves with apex predators and unprotected areas without apex predators, thus confounding generalizations. Further studies are therefore required to investigate possible mesopredator release when apex predators are absent.

Do Power Lines and Protected Areas Present a Catch-22 Situation for Cape Vultures (Gyps coprotheres)?

Cape vulture Gyps coprotheres populations have declined across their range due to multiple anthropogenic threats. Their susceptibility to fatal collisions with the expanding power line network and the prevalence of carcasses contaminated with illegal poisons and other threats outside protected areas are thought to be the primary drivers of declines in southern Africa. We used GPS-GSM units to track the movements and delineate the home ranges of five adult (mean ±SD minimum convex polygon area  =  121,655±90,845 km2) and four immature (mean ±SD minimum convex polygon area  =  492,300±259,427 km2) Cape vultures to investigate the influence of power lines and their use of protected areas. The vultures travelled more than 1,000 km from the capture site and collectively entered five different countries in southern Africa. Their movement patterns and core foraging ranges were closely associated with the spatial distribution of transmission power lines and we present evidence that the construction of power lines has allowed the species to extend its range to areas previously devoid of suitable perches. The distribution of locations of known Cape vulture mortalities caused by interactions with power lines corresponded to the core ranges of the tracked vultures. Although some of the vultures regularly roosted at breeding colonies located inside protected areas the majority of foraging activity took place on unprotected farmland. Their ability to travel vast distances very quickly and the high proportion of time they spend in the vicinity of power lines and outside protected areas make Cape vultures especially vulnerable to negative interactions with the expanding power line network and the full range of threats across the region. Co-ordinated cross-border conservation strategies beyond the protected area network will therefore be necessary to ensure the future survival of threatened vultures in Africa.

The role of setts in badger (Meles meles) group size, breeding success and status of TB (Mycobacterium bovis)

This paper examines the relationship between the number of occupied setts in a badger social group territory and badger group size, breeding success, and status of infection with Mycobacterium bovis (TB). The data used were from a long-term epidemiological and ecological study of a high-density population of badgers Meles meles in south-west England. The number of occupied setts in a social group was significantly and positively related to the number of badgers caught in the social group, so that as a social group increases in size, badgers occupy more of the available setts. This relationship remained significant when numbers of adults, adult males and adult females were examined. The number of breeding females, number of cubs and sex ratio was not related to the number of occupied setts in a social group. It is possible that the advantages to breeding females of a larger number of setts available to breed in might be outweighed by the increased aggression found in larger groups. The TB score for prevalence and for incidence of social groups was significantly and positively related to the number of occupied setts in a social group, such that the more occupied setts there were in a territory, the higher the TB index of the group. Possibly the setts themselves contribute to the persistence of TB within social groups, or badgers infected with TB might show a difference in behaviour from uninfected badgers resulting in their increased use of outlying setts.

Comparative efficacy of sign surveys, spotlighting and audio playbacks in a landscape-scale carnivore survey

Many carnivores are difficult and labour-intensive to detect, often leading to prohibitively high effort and cost in large-scale surveys. However, such studies provide Information that is Important for effective management and conservation. Here, we evaluate the suitability of three survey methods for landscape-scale multi-species monitoring. We compare sign surveys, spotlighting, and audio playbacks in terms of detection efficiency, precision, effort, and cost. Sign surveys out-performed the other methods in all comparison criteria, although supplementary methods were needed for some species and sites. We found that using established analysis techniques, robust landscape-scale abundance estimates would require unrealistically high effort and cost. Occupancy estimation required considerably lower sample sizes and was therefore more economical. We conclude that sign-based occupancy estimates constitute a versatile and efficient option for future large-scale, multi-species carnivore surveys.

The impact of fire on habitat use by the short-snouted elephant shrew ('Elephantulus brachyrhynchus') in North West Province, South Africa

ABSTRACT Several studies have investigated the response of small mammal populations to fire, but few have investigated behavioural responses to habitat modification. In this study we investigated the impact of fire on home range, habitat use and activity patterns of the short-snouted elephant shrew (Elephantulus brachyrhynchus) by radio-tracking individuals before and after a fire event. All animals survived the passage of fire in termite mound refugia. Before the fire, grassland was used more than thickets, but habitat utilization shifted to thickets after fire had removed the grass cover. Thickets were an important refuge both pre- and post-fire, but the proportion of thicket within the home range was greater post-fire. We conclude that fire-induced habitat modification resulted in a restriction of E. brachyrhynchus movements to patches of unburned vegetation. This may be a behavioural response to an increase in predation pressure associated with a reduction in cover, rather than a lack of food. This study highlights the importance of considering the landscape mosaic in fire management and allowing sufficient island patches to remain post-fire ensures the persistence of the small mammal fauna.

The Influence of Large Predators on the Feeding Ecology of Two African Mesocarnivores: The Black-Backed Jackal and the Brown Hyaena

Interactions between apex and mesopredators and their impacts on prey populations have been well documented, while the influence of apex predators such as lions on carrion availability and the subsequent impacts at lower trophic levels are not fully understood. Here we assess dietary overlap between two sympatric carnivores (brown hyaena, Parahyaena brunnea, and black-backed jackal, Canis mesomelas) in neighbouring reserves with and without apex predators (lions, Panthera leo, and wild dog, Lycaon pictus). We investigate whether apex predators facilitate niche partitioning between mesocarnivores by creating additional scavenging opportunities through predatory activity. We found that brown hyaena density was higher in the area with apex predators, while black-backed jackal density was higher in the area without apex predators. Black-backed jackal scats contained broadly similar dietary items at both sites, while large mammal remains occurred significantly more frequently in brown hyaena scats collected in the presence of apex predators. In the absence of apex predators there was a markedly higher degree of overlap between brown hyaena and jackal diets, suggesting increased levels of inter-specific competition. Our results suggest that apex predators potentially reduce levels of inter-specific competition for food between mesocarnivores by providing additional scavenging opportunities for specialist scavengers such as brown hyaena.

Improving individual identification in captive Eastern grey wolves (Canis lupus lycaon) using the time course of howl amplitudes

Many bioacoustic studies have been able to identify individual mammals from variations in the fundamental frequency (F0) of their vocalizations. Other characteristics of vocalization which encode individuality, such as amplitude, are less frequently used because of problems with background noise and recording fidelity over distance. In this paper, we investigate whether the inclusion of amplitude variables improves the accuracy of individual howl identification in captive Eastern grey wolves (Canis lupus lycaon). We also explore whether the use of a bespoke code to extract the howl features, combined with histogram-derived principal component analysis (PCA) values, can improve current individual wolf howl identification accuracies. From a total of 89 solo howls from six captive individuals, where distances between wolf and observer were short, we achieved 95.5% (+9.0% improvement) individual identification accuracy of captive wolves using discriminant function analysis (DFA) to classify simple scalar variables of F0 and normalized amplitudes. Moreover, this accuracy was increased by 100% when using histogram-derived PCA values of F0 and amplitudes of the first harmonic. We suggest that individual identification accuracy can be improved by including amplitude changes for species where F0 has only been included so far. Using DFA on PCA values of both F0 and amplitude could optimize vocal identification in a range of mammal bioacoustic studies.