Rita Fonseca

Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge

Microbial communities and their associated metabolic activity in marine sediments have a profound impact on global biogeochemical cycles. Their composition and structure are attributed to geochemical and physical factors, but finding direct correlations has remained a challenge. Here we show a significant statistical relationship between variation in geochemical composition and prokaryotic community structure within deep-sea sediments. We obtained comprehensive geochemical data from two gravity cores near the hydrothermal vent field Loki’s Castle at the Arctic Mid-Ocean Ridge, in the Norwegian-Greenland Sea. Geochemical properties in the rift valley sediments exhibited strong centimeter-scale stratigraphic variability. Microbial populations were profiled by pyrosequencing from 15 sediment horizons (59,364 16S rRNA gene tags), quantitatively assessed by qPCR, and phylogenetically analyzed. Although the same taxa were generally present in all samples, their relative abundances varied substantially among horizons and fluctuated between Bacteria- and Archaea-dominated communities. By independently summarizing covariance structures of the relative abundance data and geochemical data, using principal components analysis, we found a significant correlation between changes in geochemical composition and changes in community structure. Differences in organic carbon and mineralogy shaped the relative abundance of microbial taxa. We used correlations to build hypotheses about energy metabolisms, particularly of the Deep Sea Archaeal Group, specific Deltaproteobacteria, and sediment lineages of potentially anaerobic Marine Group I Archaea. We demonstrate that total prokaryotic community structure can be directly correlated to geochemistry within these sediments, thus enhancing our understanding of biogeochemical cycling and our ability to predict metabolisms of uncultured microbes in deep-sea sediments.

Land erosion and associated evolution of clay minerals assemblages from soils to artificial lakes in two distinct climate regimes in Portugal and Brazil

Abstract Given that reservoirs contain most of the leached materials from soils, we have studied the sediments accumulated in the bottom of two groups of reservoirs developed under different climatic conditions and thus with contrasting rates of weathering/erosion regimes. Through detailed comparative study of clay minerals of the parent rocks and soils with the clay fractions of the dam sediments, we have concluded that, during cycles of erosion-transport-deposition, the leached materials have complex transformation mechanisms, making them much more active in the environment. All clay-mineral groups are well represented in the reservoir sediments, including abundant mixed-layer and partly disordered minerals. Moreover, the sediments are nutrient-rich and potentially useful as agricultural fertilizers and hence in reversing the declining soil productivity in some regions.

Role of the sediments of two tropical dam reservoirs in the flux of metallic elements to the water column

In tropical climates, the high rainfall and temperature, throughout the annual cycle, allow high leaching rates of metallic elements from the basin upstream, which accumulate in the reservoirs. However, the concentration of these elements in natural waters is usually lower than expected, due to the ease of adsorption and co-precipitation in solid phases. We have studied two tropical dam reservoirs in Brazil, Três Marias (Minas Gerais) and Tucuruí (Pará), with the aim of understanding the correlation between physical-chemical parameters of the water column, chemical and mineralogical characteristics of the accumulated material and the solubility, mobilization and precipitation of metals in reservoirs. Metals speciation performed in selected samples determined that metallic micronutrients are preferentially adsorbed or retained through precipitation/co-precipitation onto fine-size charged crystalline/amorphous Fe-oxides. Under the prevailing reducing and low pH conditions of the bottom reservoirs, some adsorbed metals (particularly Fe and Mn) are easily released from their metal bearing-phases and mobilized to the aqueous phase of sediments, which show high levels of soluble forms of these elements. However, the solubilization process and the release to the water column are not very extensive, as abundances of metals such as Fe, Mn, Zn and Cu in water are low, although increasing with depth.