Robert Baxter

Phosphorus composition of upland soils polluted by long-term atmospheric nitrogen deposition

Atmospheric N deposition can enhance biological P limitation in terrestrial ecosystems and increase the importance of organic P to plants and microorganisms. We used NaOH–EDTA extraction and solution 31P NMR spectroscopy to determine the P composition of soils in the Upper Teesdale National Nature Reserve, northern England, an upland region influenced by such deposition for at least 150 years. Three characteristic soil types were sampled on three occasions during an annual cycle: blanket peat (318 mg g−1 total C, 607 μg g−1 total P, pH 3.9); acid organic soil under grassland (354 mg g−1 total C, 1190 μg g−1 total P, pH 3.7); calcareous soil under grassland (140 mg g−1 total C, 649 μg g−1 total P, pH 7.3). Between 58 and 99% of the total P in soil and litter layers was extracted by 0.25 M NaOH + 0.05 M EDTA. Extracts of all soils were dominated by organic P, mainly in the form of orthophosphate monoesters (43–69% extracted P). The two acidic soils also contained large proportions of orthophosphate diesters (6–19% extracted P) and phosphonates (7–16% extracted P), suggesting that these compounds become stabilised at low pH. However, a seasonal trend of increasing orthophosphate monoester-to-diester ratios, most evident in the calcareous grassland soil, indicated the preferential degradation of orthophosphate diesters during the growing season. Orthophosphate was the major inorganic P compound (17–34% extracted P), and all soils contained pyrophosphate (1–5% extracted P). However, orthophosphate determined in the NaOH–EDTA extracts by solution 31P NMR spectroscopy was substantially greater than that determined by molybdate colourimetry, suggesting that orthophosphate occurred in complexes with humic compounds that were not detected by conventional procedures. Our results suggest that organisms able to use recalcitrant soil organic P may have a competitive advantage in environments under enhanced atmospheric N deposition.

Seasonal phosphatase activity in three characteristic soils of the English uplands polluted by long-term atmospheric nitrogen deposition.

Phosphomonoesterase activities were determined monthly during a seasonal cycle in three characteristic soil types of the English uplands that have been subject to long-term atmospheric nitrogen deposition. Activities (micromol para-nitrophenol g(-1) soil dry wt. h(-1)) ranged between 83.9 and 307 in a blanket peat (total carbon 318 mg g(-1). pH 3.9), 45.2-86.4 in an acid organic grassland soil (total carbon 354 mg g(-1), pH 3.7) and 10.4-21.1 in a calcareous grassland soil (total carbon 140 mg g(-1) pH 7.3). These are amongst the highest reported soil phosphomonoesterase activities and confirm the strong biological phosphorus limitation in this environment.

Net ecosystem exchange over heterogeneous Arctic tundra: Scaling between chamber and eddy covariance measurements

Net ecosystem exchange (NEE) was estimated for an area of tundra near Abisko using both eddy covariance (EC) data and chamber measurements. This area of tundra is heterogeneous with six principal elements forming a landscape mosaic. Chamber measurements in patches of the individual mosaic elements were used to model NEE as a function of irradiance and temperature. The area around the EC mast was mapped, and a footprint model was used to simulate the varying source fraction attributable to each mosaic element. Various upscaling approaches were used to estimate NEE for comparison with NEE calculated from the EC observations. The results showed that EC measurements made for such a heterogeneous site are robust to the variations in NEE between mosaic elements that also vary substantially in their source fractions. However, they also revealed a large (∼60%) bias in the absolute magnitude of the cumulative negative NEE for a 40-day study period simulated by various upscaling approaches when compared to the value calculated from the EC observations. The magnitude of this bias, if applied to estimates for the entire tundra region, is substantial in relation to other components of the global carbon budget. Various hypotheses to account for this bias are discussed and, where possible, evaluated. A need is identified for more systematic sampling strategies when performing chamber measurements in order to assess the extent to which subjectivity of chamber location may account for much of the observed bias. If this is the origin of the bias, then upscaling approaches using chamber measurements may generally overestimate CO2 uptake.

Transformations of monoterpenoids in aqueous acids: The reactions of linalool. geraniol, nerol and their acetates in aqueous citric acid

Abstract The fate of linalool, geraniol and nerol and their acetates in aqueous citric and hydrochloric acids has been investigated. Linalool and linalyl acetate yield predominantly α-terpineol and 3,7-dimethyloct-1-en-3,7-diol ( 6 ). Geraniol and nerol afford α-terpineol, linalool and the isomeric 3,7-dimethyloct-2-en-1,7-diols ( 7 and 8 ). While both neryl and geranyl acetate give α-terpineol and linalool, the former affords Z-1-acetoxy-3,7-dimethyloct-2-en-7-ol ( 8a ), and the latter the E-isomer 7a and 2β-acetoxymethyl-1α,3,3-trimethylcyclohexanol ( 13 ).

Effects of warming on shrub abundance and chemistry drive ecosystem-level changes in a forest-tundra ecotone

Tundra vegetation is responding rapidly to on-going climate warming. The changes in plant abundance and chemistry might have cascading effects on tundra food webs, but an integrated understanding of how the responses vary between habitats and across environmental gradients is lacking. We assessed responses in plant abundance and plant chemistry to warmer climate, both at species and community levels, in two different habitats. We used a long-term and multisite warming (OTC) experiment in the Scandinavian forest–tundra ecotone to investigate (i) changes in plant community composition and (ii) responses in foliar nitrogen, phosphorus, and carbon-based secondary compound concentrations in two dominant evergreen dwarf-shrubs (Empetrum hermaphroditum and Vaccinium vitis-idaea) and two deciduous shrubs (Vaccinium myrtillus and Betula nana). We found that initial plant community composition, and the functional traits of these plants, will determine the responsiveness of the community composition, and thus community traits, to experimental warming. Although changes in plant chemistry within species were minor, alterations in plant community composition drive changes in community-level nutrient concentrations. In view of projected climate change, our results suggest that plant abundance will increase in the future, but nutrient concentrations in the tundra field layer vegetation will decrease. These effects are large enough to have knock-on consequences for major ecosystem processes like herbivory and nutrient cycling. The reduced food quality could lead to weaker trophic cascades and weaker top down control of plant community biomass and composition in the future. However, the opposite effects in forest indicate that these changes might be obscured by advancing treeline forests.

Upscaling as ecological information transfer: a simple framework with application to Arctic ecosystem carbon exchange

Transferring ecological information across scale often involves spatial aggregation, which alters information content and may bias estimates if the scaling process is nonlinear. Here, a potential solution, the preservation of the information content of fine-scale measurements, is highlighted using modeled net ecosystem exchange (NEE) of an Arctic tundra landscape as an example. The variance of aggregated normalized difference vegetation index (NDVI), measured from an airborne platform, decreased linearly with log(scale), resulting in a linear relationship between log(scale) and the scale-wise modeled NEE estimate. Preserving three units of information, the mean, variance and skewness of fine-scale NDVI observations, resulted in upscaled NEE estimates that deviated less than 4% from the fine-scale estimate. Preserving only the mean and variance resulted in nearly 23% NEE bias, and preserving only the mean resulted in larger error and a change in sign from CO2 sink to source. Compressing NDVI maps by 70–75% using wavelet thresholding with the Haar and Coiflet basis functions resulted in 13% NEE bias across the study domain. Applying unique scale-dependent transfer functions between NDVI and leaf area index (LAI) decreased, but did not remove, bias in modeled flux in a smaller expanse using handheld NDVI observations. Quantifying the parameters of statistical distributions to preserve ecological information reduces bias when upscaling and makes possible spatial data assimilation to further reduce errors in estimates of ecological processes across scale.

Mechanistic implications and family relationships from the structure of dethiobiotin synthetase.

BACKGROUND Biotin is the vitamin essential for many biological carboxylation reactions, such as the conversion of acetyl-coenzyme A (CoA) to malonyl-CoA in fatty acid biosynthesis. Dethiobiotin synthetase (DTBS) facilitates the penultimate, ureido ring closure in biotin synthesis, which is a non-biotin-dependent carboxylation. DTBS displays no sequence similarity to any other protein in the database. Structural studies provide a molecular insight into the reaction mechanism of DTBS. RESULTS We present the structure of DTBS refined to 1.80 A resolution with an R-factor of 17.2% for all terms plus unrefined data on the binding of the substrate, 7,8-diaminopelargonic acid and the product, dethiobiotin. These studies confirm that the protein forms a homodimer with each subunit folded as a single globular alpha/beta domain. The presence of sulphate ions in the crystals and comparisons with the related Ha-ras-p21 oncogene product are used to infer the ATP-binding site, corroborated by the difference electron density for the ATP analogue AMP-PNP. CONCLUSIONS This study establishes that the enzyme active site is situated at the dimer interface, with the substrate binding to one monomer and ATP to the other. The overall fold of DTBS closely resembles that of three other enzymes, adenylosuccinate synthetase (purA), Ha-ras-p21, and nitrogenase iron protein, that are unrelated by sequence or function, indicating that DTBS is a member of a diverse family of enzymes.

A C-Repeat Binding Factor Transcriptional Activator (CBF/DREB1) from European Bilberry (Vaccinium myrtillus) Induces Freezing Tolerance When Expressed in Arabidopsis thaliana

Freezing stress affects all plants from temperate zones to the poles. Global climate change means such freezing events are becoming less predictable. This in turn reduces the ability of plants to predict the approaching low temperatures and cold acclimate. This has consequences for crop yields and distribution of wild plant species. C-repeat binding factors (CBFs) are transcription factors previously shown to play a vital role in the acclimation process of Arabidopsis thaliana, controlling the expression of hundreds of genes whose products are necessary for freezing tolerance. Work in other plant species cements CBFs as key determinants in the trait of freezing tolerance in higher plants. To test the function of CBFs from highly freezing tolerant plants species we cloned and sequenced CBF transcription factors from three Vaccinium species (Vaccinium myrtillus, Vaccinium uliginosum and Vaccinium vitis-idaea) which we collected in the Arctic. We tested the activity of CBF transcription factors from the three Vaccinium species by producing transgenic Arabidopsis lines overexpressing them. Only the Vaccinium myrtillus CBF was able to substantially activate COR (CBF-target) gene expression in the absence of cold. Correspondingly, only the lines expressing the Vaccinium myrtillus CBF were constitutively freezing tolerant. The basis for the differences in potency of the three Vaccinium CBFs was tested by observing cellular localisation and protein levels. All three CBFs were correctly targeted to the nucleus, but Vaccinium uliginosum CBF appeared to be relatively unstable. The reasons for lack of potency for Vaccinium vitis-idaea CBF were not due to stability or targeting, and we speculate that this was due to altered transcription factor function.

Host plant growth characteristics as determinants of abundance and phenology in jumping plant-lice on downy willow

1. Salix lapponum host plants at an upper altitudinal site differed significantly in size, structural density, phenology, growth performance, and spatial isolation from those growing at a lower site.

Seasonal phosphatase activities of mosses from Upper Teesdale, northern England

Abstract Changes in tissue nutrient concentrations and surface phosphatase activities of eight moss species were measured over one year in terrestrial and semi-aquatic environments on Widdybank Fell, Upper Teesdale National Nature Reserve, northern England. Rates of phosphatase activity in apical regions of moss shoots differed markedly between species, but were generally greatest in the winter and least in the summer in most species. Mean values for phosphomonoesterase activity (µmol para-nitrophenol g-1 d.wt h-1) ranged from 18.2 for Polytrichum commune to 85.8 for Palustriella commutata var. falcata. Mean phosphodiesterase activity ranged from 3.1 for Polytrichum commune to 86.2 for Hylocomium splendens. In contrast, tissue nitrogen and phosphorus concentrations remained relatively constant throughout the year. Phosphatase activities were negatively correlated with tissue phosphorus concentration for several species, although few relationships were detected between ambient nutrient concentrations and phosphatase activity, tissue nitrogen, or tissue phosphorus concentration. These results demonstrate that phosphatase activities can provide a sensitive indicator of nutrient stress in terrestrial and semi-aquatic mosses, notably in the ectohydric Hylocomium splendens. However, further studies at sites with a wide range of nutrient levels are required to determine whether the technique can be used to indicate ambient nutrient status.